Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
22:13:20 (62925): wrapper (7.7.26015): starting
22:13:20 (62925): wrapper: running run_atlas (--nthreads 6)
[2025-10-21 22:13:20] Arguments: --nthreads 6
[2025-10-21 22:13:20] Threads: 6
[2025-10-21 22:13:20] Checking for CVMFS
[2025-10-21 22:13:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 22:13:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 22:13:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 22:13:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 22:13:22] 2.11.5.0 4381 13 45888 151969 2 188 3654720 4194305 2478 130560 0 169543 99.990 2791 860 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-10-21 22:13:22] CVMFS is ok
[2025-10-21 22:13:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 22:13:22] Checking for apptainer binary...
[2025-10-21 22:13:22] apptainer is not installed, using version from CVMFS
[2025-10-21 22:13:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 22:13:22] boinc-b450f
[2025-10-21 22:13:22] apptainer works
[2025-10-21 22:13:22] Set ATHENA_PROC_NUMBER=6
[2025-10-21 22:13:22] Set ATHENA_CORE_NUMBER=6
[2025-10-21 22:13:22] Starting ATLAS job with PandaID=6852953655
[2025-10-21 22:13:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 23:44:07]  *** The last 200 lines of the pilot log: ***
[2025-10-21 23:44:07]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6852953655/log.46771637._056377.job.log.tgz.1
[2025-10-21 23:44:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/b0/log.46771637._056377.job.log.tgz.1
[2025-10-21 23:44:07]  workdir=None
[2025-10-21 23:44:07] ]
[2025-10-21 23:44:07] 2025-10-21 21:43:27,771 | INFO     | transferring file log.46771637._056377.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6852953655/log.46771637._056377.job.log.tgz.1 to /var/lib/boinc
[2025-10-21 23:44:07] 2025-10-21 21:43:27,771 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6852953655/log.46771637._056377.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.467716
[2025-10-21 23:44:07] 2025-10-21 21:43:27,780 | INFO     | adding to output.list: log.46771637._056377.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/b0/log.46771637._056377.job.log.tg
[2025-10-21 23:44:07] 2025-10-21 21:43:27,780 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 23:44:07] 2025-10-21 21:43:27,780 | INFO     | summary of transferred files:
[2025-10-21 23:44:07] 2025-10-21 21:43:27,780 | INFO     |  -- lfn=log.46771637._056377.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 23:44:07] 2025-10-21 21:43:27,780 | INFO     | stage-out finished correctly
[2025-10-21 23:44:07] 2025-10-21 21:43:28,445 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 23:44:07] 2025-10-21 21:43:28,700 | INFO     | PID=75504 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 23:44:07] 2025-10-21 21:43:28,700 | INFO     | .. there are 4 such processes running
[2025-10-21 23:44:07] 2025-10-21 21:43:29,282 | INFO     | monitor loop #396: job 0:6852953655 is in state 'finished'
[2025-10-21 23:44:07] 2025-10-21 21:43:29,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:44:07] 2025-10-21 21:43:29,701 | INFO     | time since job start (5389s) is within the limit (172800.0s)
[2025-10-21 23:44:07] 2025-10-21 21:43:29,701 | INFO     | 5391s have passed since pilot start - server update state is 'RUNNING'
[2025-10-21 23:44:07] 2025-10-21 21:43:30,182 | INFO     | job 6852953655 has state=finished
[2025-10-21 23:44:07] 2025-10-21 21:43:30,182 | INFO     | preparing for final server update for job 6852953655 in state='finished'
[2025-10-21 23:44:07] 2025-10-21 21:43:30,182 | INFO     | this job has now completed (state=finished)
[2025-10-21 23:44:07] 2025-10-21 21:43:30,182 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 23:44:07] 2025-10-21 21:43:30,182 | INFO     | log transfer has been attempted: DONE
[2025-10-21 23:44:07] 2025-10-21 21:43:30,182 | INFO     | job 6852953655 has finished - writing final server update
[2025-10-21 23:44:07] 2025-10-21 21:43:30,183 | INFO     | total number of processed events: 400 (read)
[2025-10-21 23:44:07] 2025-10-21 21:43:30,184 | INFO     | executing command: lscpu
[2025-10-21 23:44:07] 2025-10-21 21:43:30,199 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 23:44:07] 2025-10-21 21:43:31,703 | INFO     | time since job start (5391s) is within the limit (172800.0s)
[2025-10-21 23:44:07] 2025-10-21 21:43:31,785 | INFO     | monitor loop #397: job 0:6852953655 is in state 'finished'
[2025-10-21 23:44:07] 2025-10-21 21:43:31,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:44:07] 2025-10-21 21:43:33,708 | INFO     | time since job start (5393s) is within the limit (172800.0s)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,288 | INFO     | monitor loop #398: job 0:6852953655 is in state 'finished'
[2025-10-21 23:44:07] 2025-10-21 21:43:34,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,676 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 23:44:07] 2025-10-21 21:43:34,678 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3916.2351249999997
[2025-10-21 23:44:07] 2025-10-21 21:43:34,680 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6852953655/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,681 | INFO     | extracted standard info from prmon json
[2025-10-21 23:44:07] 2025-10-21 21:43:34,681 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 23:44:07] 2025-10-21 21:43:34,681 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 23:44:07] 2025-10-21 21:43:34,681 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 23:44:07] 2025-10-21 21:43:34,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 23:44:07] 2025-10-21 21:43:34,683 | INFO     | fitting pss+swap vs Time
[2025-10-21 23:44:07] 2025-10-21 21:43:34,683 | INFO     | sum of square deviations: 164765880.0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,683 | INFO     | sum of deviations: -245206031.00000006
[2025-10-21 23:44:07] 2025-10-21 21:43:34,683 | INFO     | mean x: 1761080381.0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,683 | INFO     | mean y: 2430303.6049382715
[2025-10-21 23:44:07] 2025-10-21 21:43:34,683 | INFO     | -- intersect: 2623285607.4881086
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | intersect: 2623285607.4881086
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | chi2: 0.002558611585634035
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | -- intersect: 2623285607.4881086
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | current memory leak: -1.49 B/s (using 81 data points, chi2=0.00)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | could have reported an average CPU frequency of 4008 MHz (6 samples)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | ..............................
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | . Timing measurements:
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | . get job = 0 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | . initial setup = 1 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,684 | INFO     | . payload setup = 1 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,685 | INFO     | . stage-in = 0 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,685 | INFO     | . payload execution = 5369 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,685 | INFO     | . stage-out = 0 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,685 | INFO     | . log creation = 0 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,685 | INFO     | ..............................
[2025-10-21 23:44:07] 2025-10-21 21:43:34,749 | INFO     | 
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | job summary report
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | --------------------------------------------------
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | PanDA job id: 6852953655
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | task id: 46771637
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | errors: (none)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | pilot state: finished 
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | transexitcode: 0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | exeerrorcode: 0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | exeerrordiag: 
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | exitcode: 0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | exitmsg: OK
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | cpuconsumptiontime: 31016 s
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | nevents: 400
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | neventsw: 0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | pid: 103683
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | pgrp: 103683
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | corecount: 6
[2025-10-21 23:44:07] 2025-10-21 21:43:34,750 | INFO     | event service: False
[2025-10-21 23:44:07] 2025-10-21 21:43:34,751 | INFO     | sizes: {0: 2348938, 1: 2349200, 10: 2349228, 5374: 2375865, 5375: 2384877, 5376: 2384933, 5382: 2385255}
[2025-10-21 23:44:07] 2025-10-21 21:43:34,751 | INFO     | --------------------------------------------------
[2025-10-21 23:44:07] 2025-10-21 21:43:34,751 | INFO     | 
[2025-10-21 23:44:07] 2025-10-21 21:43:34,751 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-21 23:44:07] 2025-10-21 21:43:34,759 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,759 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,759 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,759 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 23:44:07] 2025-10-21 21:43:34,761 | INFO     | job 6852953655 has completed (purged errors)
[2025-10-21 23:44:07] 2025-10-21 21:43:34,761 | INFO     | overall cleanup function is called
[2025-10-21 23:44:07] 2025-10-21 21:43:35,767 | INFO     | --- collectZombieJob: --- 10, [103683]
[2025-10-21 23:44:07] 2025-10-21 21:43:35,767 | INFO     | zombie collector waiting for pid 103683
[2025-10-21 23:44:07] 2025-10-21 21:43:35,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 23:44:07] 2025-10-21 21:43:35,767 | INFO     | collected zombie processes
[2025-10-21 23:44:07] 2025-10-21 21:43:35,767 | INFO     | will attempt to kill all subprocesses of pid=103683
[2025-10-21 23:44:07] 2025-10-21 21:43:35,858 | INFO     | process IDs to be killed: [103683] (in reverse order)
[2025-10-21 23:44:07] 2025-10-21 21:43:35,883 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 23:44:07] 2025-10-21 21:43:35,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 23:44:07] 2025-10-21 21:43:35,886 | INFO     | did not find any defunct processes belonging to 103683
[2025-10-21 23:44:07] 2025-10-21 21:43:35,888 | INFO     | did not find any defunct processes belonging to 103683
[2025-10-21 23:44:07] 2025-10-21 21:43:35,888 | INFO     | ready for new job
[2025-10-21 23:44:07] 2025-10-21 21:43:35,888 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 23:44:07] 2025-10-21 21:43:35,888 | INFO     | ***************************************
[2025-10-21 23:44:07] 2025-10-21 21:43:35,889 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 23:44:07] 2025-10-21 21:43:35,889 | INFO     | ***************************************
[2025-10-21 23:44:07] 2025-10-21 21:43:35,889 | INFO     | 
[2025-10-21 23:44:07] 2025-10-21 21:43:35,889 | INFO     | architecture information:
[2025-10-21 23:44:07] 2025-10-21 21:43:35,890 | INFO     | executing command: cat /etc/os-release
[2025-10-21 23:44:07] 2025-10-21 21:43:35,896 | INFO     | cat /etc/os-release:
[2025-10-21 23:44:07] NAME="CentOS Linux"
[2025-10-21 23:44:07] VERSION="7 (Core)"
[2025-10-21 23:44:07] ID="centos"
[2025-10-21 23:44:07] ID_LIKE="rhel fedora"
[2025-10-21 23:44:07] VERSION_ID="7"
[2025-10-21 23:44:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 23:44:07] ANSI_COLOR="0;31"
[2025-10-21 23:44:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 23:44:07] HOME_URL="https://www.centos.org/"
[2025-10-21 23:44:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 23:44:07] 
[2025-10-21 23:44:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 23:44:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 23:44:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 23:44:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 23:44:07] 
[2025-10-21 23:44:07] 2025-10-21 21:43:35,896 | INFO     | ***************************************
[2025-10-21 23:44:07] 2025-10-21 21:43:36,399 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | INFO     | sufficient remaining disk space (17314086912 B)
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | INFO     | update_server=False
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 23:44:07] 2025-10-21 21:43:36,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 23:44:07] 2025-10-21 21:43:36,791 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-21 23:44:07] 2025-10-21 21:43:36,791 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-21 23:44:07] 2025-10-21 21:43:36,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 23:44:07] 2025-10-21 21:43:36,792 | INFO     | will abort loop
[2025-10-21 23:44:07] 2025-10-21 21:43:36,954 | INFO     | all data control threads have been joined
[2025-10-21 23:44:07] 2025-10-21 21:43:37,412 | INFO     | [job] retrieve thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:37,412 | INFO     | [job] queue monitor thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:37,637 | INFO     | [payload] failed_post thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:37,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:37,647 | INFO     | all payload control threads have been joined
[2025-10-21 23:44:07] 2025-10-21 21:43:37,797 | INFO     | [job] job monitor thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:37,921 | INFO     | all job control threads have been joined
[2025-10-21 23:44:07] 2025-10-21 21:43:37,959 | INFO     | [data] control thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,069 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,412 | INFO     | [data] copytool_out thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,622 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,652 | INFO     | [payload] control thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,709 | INFO     | [job] validate thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,719 | INFO     | [data] copytool_in thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,830 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,830 | INFO     | [payload] validate_post thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:38,927 | INFO     | [job] control thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:39,014 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 23:44:07] 2025-10-21 21:43:40,385 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-21 23:44:07] 2025-10-21 21:43:43,022 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 23:44:07] 2025-10-21 21:43:49,731 | INFO     | [monitor] cgroup control has ended
[2025-10-21 23:44:07] 2025-10-21 21:43:49,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329124099904)>', '<ExcThread(monitor, started 140328434648832)>']
[2025-10-21 23:44:07] 2025-10-21 21:43:54,932 | INFO     | all workflow threads have been joined
[2025-10-21 23:44:07] 2025-10-21 21:43:54,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 23:44:07] 2025-10-21 21:43:54,932 | INFO     | traces error code: 0
[2025-10-21 23:44:07] 2025-10-21 21:43:54,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 23:44:07] 2025-10-21 21:44:06,902 | INFO     | PID=75504 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 23:44:07] 2025-10-21 21:44:06,902 | INFO     | .. there are 4 such processes running
[2025-10-21 23:44:07] 2025-10-21 21:44:06,902 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 23:44:07] 2025-10-21 21:44:06,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 23:44:07] 2025-10-21 21:44:06,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 23:44:07] 2025-10-21 21:44:06,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 23:44:07] 2025-10-21 21:44:06,903 | INFO     | [monitor] control thread has ended
[2025-10-21 23:44:07] 2025-10-21 21:44:06,968 [wrapper] ==== pilot stdout END ====
[2025-10-21 23:44:07] 2025-10-21 21:44:06,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 23:44:07] 2025-10-21 21:44:06,970 [wrapper] pilotpid: 75504
[2025-10-21 23:44:07] 2025-10-21 21:44:06,972 [wrapper] Pilot exit status: 0
[2025-10-21 23:44:07] 2025-10-21 21:44:06,977 [wrapper] pandaids: 6852953655
[2025-10-21 23:44:07] 2025-10-21 21:44:06,992 [wrapper] cleanup supervisor_pilot  172121 75505
[2025-10-21 23:44:07] 2025-10-21 21:44:06,993 [wrapper] Test setup, not cleaning
[2025-10-21 23:44:07] 2025-10-21 21:44:06,995 [wrapper] apfmon messages muted
[2025-10-21 23:44:07] 2025-10-21 21:44:06,996 [wrapper] ==== wrapper stdout END ====
[2025-10-21 23:44:07] 2025-10-21 21:44:06,997 [wrapper] ==== wrapper stderr END ====
[2025-10-21 23:44:07]  *** Error codes and diagnostics ***
[2025-10-21 23:44:07]     "exeErrorCode": 0,
[2025-10-21 23:44:07]     "exeErrorDiag": "",
[2025-10-21 23:44:07]     "pilotErrorCode": 0,
[2025-10-21 23:44:07]     "pilotErrorDiag": "",
[2025-10-21 23:44:07]  *** Listing of results directory ***
[2025-10-21 23:44:07] total 423905
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc    557409 Oct 21 01:48 pilot3.tar.gz
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc      5112 Oct 21 01:57 queuedata.json
[2025-10-21 23:44:07] -rwx------ 1 boinc boinc     36292 Oct 21 02:03 runpilot2-wrapper.sh
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc       100 Oct 21 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 23:44:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 22:13 run_atlas
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc       105 Oct 21 22:13 job.xml
[2025-10-21 23:44:07] -rw-r--r-- 2 boinc boinc     15120 Oct 21 22:13 start_atlas.sh
[2025-10-21 23:44:07] drwxrwx--x 2 boinc boinc         5 Oct 21 22:13 shared
[2025-10-21 23:44:07] -rw-r--r-- 2 boinc boinc    569677 Oct 21 22:13 input.tar.gz
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc      6795 Oct 21 22:13 init_data.xml
[2025-10-21 23:44:07] -rw-r--r-- 2 boinc boinc 227818875 Oct 21 22:13 EVNT.46771634._002210.pool.root.1
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc         0 Oct 21 22:13 boinc_lockfile
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc      2560 Oct 21 22:13 pandaJob.out
[2025-10-21 23:44:07] -rw------- 1 boinc boinc    978448 Oct 21 22:13 agis_schedconf.cvmfs.json
[2025-10-21 23:44:07] -rw------- 1 boinc boinc   1560740 Oct 21 22:13 agis_ddmendpoints.agis.ALL.json
[2025-10-21 23:44:07] drwx------ 5 boinc boinc        22 Oct 21 22:13 pilot3
[2025-10-21 23:44:07] -rw------- 1 boinc boinc 204307365 Oct 21 23:43 HITS.46771637._056377.pool.root.1
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc       529 Oct 21 23:43 boinc_task_state.xml
[2025-10-21 23:44:07] -rw------- 1 boinc boinc      1025 Oct 21 23:43 memory_monitor_summary.json
[2025-10-21 23:44:07] -rw------- 1 boinc boinc    311008 Oct 21 23:43 log.46771637._056377.job.log.tgz.1
[2025-10-21 23:44:07] -rw------- 1 boinc boinc        95 Oct 21 23:43 pilot_heartbeat.json
[2025-10-21 23:44:07] -rw------- 1 boinc boinc      7752 Oct 21 23:43 heartbeat.json
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc      8192 Oct 21 23:43 boinc_mmap_file
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc        27 Oct 21 23:43 wrapper_checkpoint.txt
[2025-10-21 23:44:07] -rw------- 1 boinc boinc       820 Oct 21 23:44 pilotlog.txt
[2025-10-21 23:44:07] -rw------- 1 boinc boinc    789101 Oct 21 23:44 log.46771637._056377.job.log.1
[2025-10-21 23:44:07] -rw------- 1 boinc boinc       357 Oct 21 23:44 output.list
[2025-10-21 23:44:07] -rw------- 1 boinc boinc       658 Oct 21 23:44 ws8KDmL1EV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXJ0NDmNNz2Wn.diag
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc      8802 Oct 21 23:44 runtime_log.err
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc       620 Oct 21 23:44 runtime_log
[2025-10-21 23:44:07] -rw------- 1 boinc boinc   1116160 Oct 21 23:44 result.tar.gz
[2025-10-21 23:44:07] -rw-r--r-- 1 boinc boinc     22036 Oct 21 23:44 stderr.txt
[2025-10-21 23:44:07] HITS file was successfully produced:
[2025-10-21 23:44:07] -rw------- 1 boinc boinc 204307365 Oct 21 23:43 shared/HITS.pool.root.1
[2025-10-21 23:44:07]  *** Contents of shared directory: ***
[2025-10-21 23:44:07] total 422829
[2025-10-21 23:44:07] -rw-r--r-- 2 boinc boinc     15120 Oct 21 22:13 start_atlas.sh
[2025-10-21 23:44:07] -rw-r--r-- 2 boinc boinc    569677 Oct 21 22:13 input.tar.gz
[2025-10-21 23:44:07] -rw-r--r-- 2 boinc boinc 227818875 Oct 21 22:13 ATLAS.root_0
[2025-10-21 23:44:07] -rw------- 1 boinc boinc 204307365 Oct 21 23:43 HITS.pool.root.1
[2025-10-21 23:44:07] -rw------- 1 boinc boinc   1116160 Oct 21 23:44 result.tar.gz
23:44:08 (62925): run_atlas exited; CPU time 31086.022867
23:44:08 (62925): called boinc_finish(0)

</stderr_txt>
]]>

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