Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:55:18 (13710): wrapper (7.7.26015): starting
05:55:18 (13710): wrapper: running run_atlas (--nthreads 3)
[2025-10-21 05:55:18] Arguments: --nthreads 3
[2025-10-21 05:55:18] Threads: 3
[2025-10-21 05:55:18] Checking for CVMFS
[2025-10-21 05:55:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 05:55:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 05:55:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 05:55:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 05:55:18] 2.9.2.0 4130834 270 56956 151945 1 57 31761401 36864000 0 130560 0 202491 99.984 10838 1538 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 05:55:18] CVMFS is ok
[2025-10-21 05:55:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 05:55:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 05:55:18] Further information can be found at the LHC@home message board.
[2025-10-21 05:55:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 05:55:18] Checking for apptainer binary...
[2025-10-21 05:55:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 05:55:18] Running /usr/bin/apptainer --version
[2025-10-21 05:55:18] apptainer version 1.4.1-1.1
[2025-10-21 05:55:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 05:55:18] magicA161a
[2025-10-21 05:55:18] apptainer works
[2025-10-21 05:55:19] Set ATHENA_PROC_NUMBER=3
[2025-10-21 05:55:19] Set ATHENA_CORE_NUMBER=3
[2025-10-21 05:55:19] Starting ATLAS job with PandaID=6852953617
[2025-10-21 05:55:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 07:22:38]  *** The last 200 lines of the pilot log: ***
[2025-10-21 07:22:38] 2025-10-21 05:22:02,618 | INFO     | [payload] control thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:02,770 | INFO     | [data] copytool_in thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:02,887 | INFO     | all job control threads have been joined
[2025-10-21 07:22:38] 2025-10-21 05:22:03,172 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:03,295 | INFO     | [job] validate thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:03,325 | INFO     | [job] job monitor thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:03,327 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:03,414 | INFO     | [data] control thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:03,454 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:03,892 | INFO     | [job] control thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:04,138 | INFO     | [data] copytool_out thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:04,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 07:22:38] 2025-10-21 05:22:08,621 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:12,180 | INFO     | job.realtimelogging is not enabled
[2025-10-21 07:22:38] 2025-10-21 05:22:13,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 07:22:38] 2025-10-21 05:22:31,326 | INFO     | PID=17429 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 07:22:38] 2025-10-21 05:22:31,326 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 07:22:38] 2025-10-21 05:22:31,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 07:22:38] 2025-10-21 05:22:31,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 07:22:38] 2025-10-21 05:22:31,459 | INFO     | [monitor] cgroup control has ended
[2025-10-21 07:22:38] 2025-10-21 05:22:33,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204321367872)>', '<ExcThread(monitor, started 140203679270656)>']
[2025-10-21 07:22:38] 2025-10-21 05:22:33,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 07:22:38] 2025-10-21 05:22:33,338 | INFO     | [monitor] control thread has ended
[2025-10-21 07:22:38] 2025-10-21 05:22:38,109 | INFO     | all workflow threads have been joined
[2025-10-21 07:22:38] 2025-10-21 05:22:38,109 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 07:22:38] 2025-10-21 05:22:38,109 | INFO     | traces error code: 0
[2025-10-21 07:22:38] 2025-10-21 05:22:38,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 07:22:38] 2025-10-21 05:22:38,158 [wrapper] ==== pilot stdout END ====
[2025-10-21 07:22:38] 2025-10-21 05:22:38,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 07:22:38] 2025-10-21 05:22:38,163 [wrapper] pilotpid: 17429
[2025-10-21 07:22:38] 2025-10-21 05:22:38,166 [wrapper] Pilot exit status: 0
[2025-10-21 07:22:38] 2025-10-21 05:22:38,173 [wrapper] pandaids: 6852953617
[2025-10-21 07:22:38] 2025-10-21 05:22:38,188 [wrapper] cleanup supervisor_pilot   35813 17430
[2025-10-21 07:22:38] 2025-10-21 05:22:38,191 [wrapper] Test setup, not cleaning
[2025-10-21 07:22:38] 2025-10-21 05:22:38,193 [wrapper] apfmon messages muted
[2025-10-21 07:22:38] 2025-10-21 05:22:38,195 [wrapper] ==== wrapper stdout END ====
[2025-10-21 07:22:38] 2025-10-21 05:22:38,197 [wrapper] ==== wrapper stderr END ====
[2025-10-21 07:22:38]  *** Error codes and diagnostics ***
[2025-10-21 07:22:38]     "exeErrorCode": 0,
[2025-10-21 07:22:38]     "exeErrorDiag": "",
[2025-10-21 07:22:38]     "pilotErrorCode": 0,
[2025-10-21 07:22:38]     "pilotErrorDiag": "",
[2025-10-21 07:22:38]  *** Listing of results directory ***
[2025-10-21 07:22:38] total 429188
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc    557409 Oct 21 01:48 pilot3.tar.gz
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc      5112 Oct 21 01:57 queuedata.json
[2025-10-21 07:22:38] -rwx------ 1 boinc boinc     36292 Oct 21 02:00 runpilot2-wrapper.sh
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc       100 Oct 21 05:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 07:22:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 05:55 run_atlas
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc       105 Oct 21 05:55 job.xml
[2025-10-21 07:22:38] -rw-r--r-- 2 boinc boinc 228192238 Oct 21 05:55 EVNT.46771634._002209.pool.root.1
[2025-10-21 07:22:38] drwxrwx--x 2 boinc boinc      4096 Oct 21 05:55 shared
[2025-10-21 07:22:38] -rw-r--r-- 2 boinc boinc    569678 Oct 21 05:55 input.tar.gz
[2025-10-21 07:22:38] -rw-r--r-- 2 boinc boinc     15120 Oct 21 05:55 start_atlas.sh
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc         0 Oct 21 05:55 boinc_setup_complete
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc      6448 Oct 21 05:55 init_data.xml
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc         0 Oct 21 05:55 boinc_lockfile
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc      2560 Oct 21 05:55 pandaJob.out
[2025-10-21 07:22:38] -rw------- 1 boinc boinc    978830 Oct 21 05:55 agis_schedconf.cvmfs.json
[2025-10-21 07:22:38] -rw------- 1 boinc boinc   1560740 Oct 21 05:55 agis_ddmendpoints.agis.ALL.json
[2025-10-21 07:22:38] drwx------ 5 boinc boinc      4096 Oct 21 05:55 pilot3
[2025-10-21 07:22:38] -rw------- 1 boinc boinc 205396677 Oct 21 07:21 HITS.46771637._056339.pool.root.1
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc       529 Oct 21 07:21 boinc_task_state.xml
[2025-10-21 07:22:38] -rw------- 1 boinc boinc      1018 Oct 21 07:21 memory_monitor_summary.json
[2025-10-21 07:22:38] -rw------- 1 boinc boinc        95 Oct 21 07:21 pilot_heartbeat.json
[2025-10-21 07:22:38] -rw------- 1 boinc boinc    248899 Oct 21 07:21 log.46771637._056339.job.log.tgz.1
[2025-10-21 07:22:38] -rw------- 1 boinc boinc      7762 Oct 21 07:21 heartbeat.json
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc        27 Oct 21 07:22 wrapper_checkpoint.txt
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc      8192 Oct 21 07:22 boinc_mmap_file
[2025-10-21 07:22:38] -rw------- 1 boinc boinc      4822 Oct 21 07:22 pilotlog.txt
[2025-10-21 07:22:38] -rw------- 1 boinc boinc    757942 Oct 21 07:22 log.46771637._056339.job.log.1
[2025-10-21 07:22:38] -rw------- 1 boinc boinc       357 Oct 21 07:22 output.list
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc       620 Oct 21 07:22 runtime_log
[2025-10-21 07:22:38] -rw------- 1 boinc boinc   1024000 Oct 21 07:22 result.tar.gz
[2025-10-21 07:22:38] -rw------- 1 boinc boinc       662 Oct 21 07:22 xV6MDmayEV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmII0NDmizrBLo.diag
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc      8797 Oct 21 07:22 runtime_log.err
[2025-10-21 07:22:38] -rw-r--r-- 1 boinc boinc      6222 Oct 21 07:22 stderr.txt
[2025-10-21 07:22:38] HITS file was successfully produced:
[2025-10-21 07:22:38] -rw------- 1 boinc boinc 205396677 Oct 21 07:21 shared/HITS.pool.root.1
[2025-10-21 07:22:38]  *** Contents of shared directory: ***
[2025-10-21 07:22:38] total 425012
[2025-10-21 07:22:38] -rw-r--r-- 2 boinc boinc 228192238 Oct 21 05:55 ATLAS.root_0
[2025-10-21 07:22:38] -rw-r--r-- 2 boinc boinc    569678 Oct 21 05:55 input.tar.gz
[2025-10-21 07:22:38] -rw-r--r-- 2 boinc boinc     15120 Oct 21 05:55 start_atlas.sh
[2025-10-21 07:22:38] -rw------- 1 boinc boinc 205396677 Oct 21 07:21 HITS.pool.root.1
[2025-10-21 07:22:38] -rw------- 1 boinc boinc   1024000 Oct 21 07:22 result.tar.gz
07:22:39 (13710): run_atlas exited; CPU time 14872.940845
07:22:39 (13710): called boinc_finish(0)

</stderr_txt>
]]>

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