Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:26:16 (8543): wrapper (7.7.26015): starting
04:26:16 (8543): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 04:26:16] Arguments: --nthreads 8
[2025-10-21 04:26:16] Threads: 8
[2025-10-21 04:26:16] Checking for CVMFS
[2025-10-21 04:26:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 04:26:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 04:26:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 04:26:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 04:26:19] 2.11.0.0 15975 12868 60428 151943 1 99 2177758 4095688 331 130560 2 2004588 99.653 1080186 579 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-21 04:26:19] CVMFS is ok
[2025-10-21 04:26:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 04:26:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 04:26:19] Further information can be found at the LHC@home message board.
[2025-10-21 04:26:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 04:26:19] Checking for apptainer binary...
[2025-10-21 04:26:19] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-21 04:26:19] apptainer is not installed, using version from CVMFS
[2025-10-21 04:26:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 04:26:19] WARNING: Environment variable TMPDIR already has value [/tmp/job_10696234/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node050
[2025-10-21 04:26:19] apptainer works
[2025-10-21 04:26:19] Set ATHENA_PROC_NUMBER=8
[2025-10-21 04:26:19] Set ATHENA_CORE_NUMBER=8
[2025-10-21 04:26:19] Starting ATLAS job with PandaID=6852949487
[2025-10-21 04:26:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10696234/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 05:18:36]  *** The last 200 lines of the pilot log: ***
[2025-10-21 05:18:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/dc/log.46771637._055320.job.log.tgz.1
[2025-10-21 05:18:36]  workdir=None
[2025-10-21 05:18:36] ]
[2025-10-21 05:18:36] 2025-10-21 03:17:29,074 | INFO     | transferring file log.46771637._055320.job.log.tgz.1 from /tmp/job_10696234/atlas/pilot/slots/0/PanDA_Pilot-6852949487/log.46771637._055320.job.log.tgz.1 to /tmp/j
[2025-10-21 05:18:36] 2025-10-21 03:17:29,074 | INFO     | executing command: /usr/bin/env mv /tmp/job_10696234/atlas/pilot/slots/0/PanDA_Pilot-6852949487/log.46771637._055320.job.log.tgz.1 /tmp/job_10696234/atlas/pilot/sl
[2025-10-21 05:18:36] 2025-10-21 03:17:29,082 | INFO     | adding to output.list: log.46771637._055320.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/dc/log.46771637._055320.job.log.tg
[2025-10-21 05:18:36] 2025-10-21 03:17:29,082 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 05:18:36] 2025-10-21 03:17:29,082 | INFO     | summary of transferred files:
[2025-10-21 05:18:36] 2025-10-21 03:17:29,082 | INFO     |  -- lfn=log.46771637._055320.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 05:18:36] 2025-10-21 03:17:29,083 | INFO     | stage-out finished correctly
[2025-10-21 05:18:36] 2025-10-21 03:17:29,134 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 05:18:36] 2025-10-21 03:17:30,118 | INFO     | time since job start (3065s) is within the limit (172800.0s)
[2025-10-21 05:18:36] 2025-10-21 03:17:31,339 | INFO     | job 6852949487 has state=finished
[2025-10-21 05:18:36] 2025-10-21 03:17:31,339 | INFO     | preparing for final server update for job 6852949487 in state='finished'
[2025-10-21 05:18:36] 2025-10-21 03:17:31,339 | INFO     | this job has now completed (state=finished)
[2025-10-21 05:18:36] 2025-10-21 03:17:31,340 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 05:18:36] 2025-10-21 03:17:31,340 | INFO     | log transfer has been attempted: DONE
[2025-10-21 05:18:36] 2025-10-21 03:17:31,340 | INFO     | job 6852949487 has finished - writing final server update
[2025-10-21 05:18:36] 2025-10-21 03:17:31,340 | INFO     | total number of processed events: 400 (read)
[2025-10-21 05:18:36] 2025-10-21 03:17:31,340 | INFO     | executing command: lscpu
[2025-10-21 05:18:36] 2025-10-21 03:17:31,370 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 05:18:36] 2025-10-21 03:17:32,124 | INFO     | time since job start (3067s) is within the limit (172800.0s)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,073 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 05:18:36] 2025-10-21 03:17:33,078 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2661.47265625
[2025-10-21 05:18:36] 2025-10-21 03:17:33,095 | INFO     | using path: /tmp/job_10696234/atlas/pilot/slots/0/PanDA_Pilot-6852949487/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,095 | INFO     | extracted standard info from prmon json
[2025-10-21 05:18:36] 2025-10-21 03:17:33,096 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 05:18:36] 2025-10-21 03:17:33,096 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 05:18:36] 2025-10-21 03:17:33,096 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 05:18:36] 2025-10-21 03:17:33,096 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 05:18:36] 2025-10-21 03:17:33,096 | INFO     | fitting pss+swap vs Time
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | sum of square deviations: 24640462.0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | sum of deviations: 244223625.99999994
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | mean x: 1761015189.0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | mean y: 2556582.88372093
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | -- intersect: -17451723085.19455
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | intersect: -17451723085.19455
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | chi2: 0.001950676873116071
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | -- intersect: -17451723085.19455
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | current memory leak: 9.91 B/s (using 43 data points, chi2=0.00)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | could have reported an average CPU frequency of 2653 MHz (5 samples)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | ..............................
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . Timing measurements:
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . get job = 0 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . initial setup = 1 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . payload setup = 2 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . stage-in = 0 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . payload execution = 3044 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,097 | INFO     | . stage-out = 0 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,098 | INFO     | . log creation = 0 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,098 | INFO     | ..............................
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | 
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | job summary report
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | --------------------------------------------------
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | PanDA job id: 6852949487
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | task id: 46771637
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | errors: (none)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | pilot state: finished 
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | transexitcode: 0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | exeerrorcode: 0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | exeerrordiag: 
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | exitcode: 0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | exitmsg: OK
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | cpuconsumptiontime: 22088 s
[2025-10-21 05:18:36] 2025-10-21 03:17:33,148 | INFO     | nevents: 400
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | neventsw: 0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | pid: 27531
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | pgrp: 27531
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | corecount: 8
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | event service: False
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | sizes: {0: 2349057, 2: 2349319, 11: 2349347, 3051: 2383924, 3055: 2384094}
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | --------------------------------------------------
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | 
[2025-10-21 05:18:36] 2025-10-21 03:17:33,149 | INFO     | executing command: ls -lF /tmp/job_10696234/atlas/pilot/slots/0
[2025-10-21 05:18:36] 2025-10-21 03:17:33,157 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | job 6852949487 has completed (purged errors)
[2025-10-21 05:18:36] 2025-10-21 03:17:33,158 | INFO     | overall cleanup function is called
[2025-10-21 05:18:36] 2025-10-21 03:17:34,164 | INFO     | --- collectZombieJob: --- 10, [27531]
[2025-10-21 05:18:36] 2025-10-21 03:17:34,164 | INFO     | zombie collector waiting for pid 27531
[2025-10-21 05:18:36] 2025-10-21 03:17:34,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 05:18:36] 2025-10-21 03:17:34,165 | INFO     | collected zombie processes
[2025-10-21 05:18:36] 2025-10-21 03:17:34,165 | INFO     | will attempt to kill all subprocesses of pid=27531
[2025-10-21 05:18:36] 2025-10-21 03:17:34,331 | INFO     | process IDs to be killed: [27531] (in reverse order)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,369 | WARNING  | process 27531 can no longer be monitored (due to stat problems) - aborting
[2025-10-21 05:18:36] 2025-10-21 03:17:34,372 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 05:18:36] 2025-10-21 03:17:34,380 | INFO     | did not find any defunct processes belonging to 27531
[2025-10-21 05:18:36] 2025-10-21 03:17:34,386 | INFO     | did not find any defunct processes belonging to 27531
[2025-10-21 05:18:36] 2025-10-21 03:17:34,386 | INFO     | ready for new job
[2025-10-21 05:18:36] 2025-10-21 03:17:34,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 05:18:36] 2025-10-21 03:17:34,386 | INFO     | ***************************************
[2025-10-21 05:18:36] 2025-10-21 03:17:34,387 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 05:18:36] 2025-10-21 03:17:34,387 | INFO     | ***************************************
[2025-10-21 05:18:36] 2025-10-21 03:17:34,387 | INFO     | 
[2025-10-21 05:18:36] 2025-10-21 03:17:34,402 | INFO     | architecture information:
[2025-10-21 05:18:36] 2025-10-21 03:17:34,402 | INFO     | executing command: cat /etc/os-release
[2025-10-21 05:18:36] 2025-10-21 03:17:34,407 | INFO     | cat /etc/os-release:
[2025-10-21 05:18:36] NAME="CentOS Linux"
[2025-10-21 05:18:36] VERSION="7 (Core)"
[2025-10-21 05:18:36] ID="centos"
[2025-10-21 05:18:36] ID_LIKE="rhel fedora"
[2025-10-21 05:18:36] VERSION_ID="7"
[2025-10-21 05:18:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 05:18:36] ANSI_COLOR="0;31"
[2025-10-21 05:18:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 05:18:36] HOME_URL="https://www.centos.org/"
[2025-10-21 05:18:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 05:18:36] 
[2025-10-21 05:18:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 05:18:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 05:18:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 05:18:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 05:18:36] 
[2025-10-21 05:18:36] 2025-10-21 03:17:34,407 | INFO     | ***************************************
[2025-10-21 05:18:36] 2025-10-21 03:17:34,471 | INFO     | using path: /tmp/job_10696234/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,472 | INFO     | using path: /tmp/job_10696234/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,472 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-21 05:18:36] 2025-10-21 03:17:34,472 | WARNING  | maxPSS not found in memory monitor output
[2025-10-21 05:18:36] 2025-10-21 03:17:34,472 | INFO     | skipping file size check of payload stdout file (/tmp/job_10696234/atlas/pilot/slots/0/PanDA_Pilot-6852949487/payload.stdout) since it has not been created yet
[2025-10-21 05:18:36] 2025-10-21 03:17:34,472 | INFO     | executing command: df -mP /tmp/job_10696234/atlas/pilot/slots/0
[2025-10-21 05:18:36] 2025-10-21 03:17:34,479 | INFO     | sufficient remaining disk space (224177160192 B)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,479 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-21 05:18:36] 2025-10-21 03:17:34,479 | INFO     | output file size check: skipping output file /tmp/job_10696234/atlas/pilot/slots/0/PanDA_Pilot-6852949487/HITS.46771637._055320.pool.root.1 since it does not exist
[2025-10-21 05:18:36] 2025-10-21 03:17:34,585 | INFO     | number of running child processes to parent process 27531: 1
[2025-10-21 05:18:36] 2025-10-21 03:17:34,586 | INFO     | maximum number of monitored processes: 6
[2025-10-21 05:18:36] 2025-10-21 03:17:34,586 | INFO     | aborting job monitoring since job object (job id=6852949487) has expired
[2025-10-21 05:18:36] 2025-10-21 03:17:34,910 | INFO     | executing command: df -mP /tmp/job_10696234/atlas/pilot/slots/0
[2025-10-21 05:18:36] 2025-10-21 03:17:34,916 | INFO     | sufficient remaining disk space (224177160192 B)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 05:18:36] 2025-10-21 03:17:34,916 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 05:18:36] 2025-10-21 03:17:34,916 | INFO     | update_server=False
[2025-10-21 05:18:36] 2025-10-21 03:17:34,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 05:18:36] 2025-10-21 03:17:34,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 05:18:36] 2025-10-21 03:17:34,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 05:18:36] 2025-10-21 03:17:34,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 05:18:36] 2025-10-21 03:17:34,917 | INFO     | will abort loop
[2025-10-21 05:18:36] 2025-10-21 03:17:35,142 | INFO     | all data control threads have been joined
[2025-10-21 05:18:36] 2025-10-21 03:17:35,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 05:18:36] 2025-10-21 03:17:35,922 | INFO     | [job] retrieve thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:35,922 | INFO     | [job] queue monitor thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:35,922 | INFO     | [job] job monitor thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:35,943 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:35,963 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:35,993 | INFO     | [payload] failed_post thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:36,109 | INFO     | [payload] validate_post thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:36,146 | INFO     | [data] control thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:36,162 | INFO     | all job control threads have been joined
[2025-10-21 05:18:36] 2025-10-21 03:17:36,344 | INFO     | [data] copytool_in thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:36,376 | INFO     | all payload control threads have been joined
[2025-10-21 05:18:36] 2025-10-21 03:17:36,922 | INFO     | [data] copytool_out thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:36,982 | INFO     | [job] validate thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:37,163 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:37,166 | INFO     | [job] control thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:37,381 | INFO     | [payload] control thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:39,189 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:17:45,167 | INFO     | job.realtimelogging is not enabled
[2025-10-21 05:18:36] 2025-10-21 03:17:46,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 05:18:36] 2025-10-21 03:18:05,319 | INFO     | PID=15865 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 05:18:36] 2025-10-21 03:18:05,319 | INFO     | .. there are 5 such processes running
[2025-10-21 05:18:36] 2025-10-21 03:18:05,319 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 05:18:36] 2025-10-21 03:18:05,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 05:18:36] 2025-10-21 03:18:05,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 05:18:36] 2025-10-21 03:18:30,322 | INFO     | [monitor] cgroup control has ended
[2025-10-21 05:18:36] 2025-10-21 03:18:31,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-21 05:18:36] 2025-10-21 03:18:31,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 05:18:36] 2025-10-21 03:18:31,449 | INFO     | [monitor] control thread has ended
[2025-10-21 05:18:36] 2025-10-21 03:18:36,058 | INFO     | all workflow threads have been joined
[2025-10-21 05:18:36] 2025-10-21 03:18:36,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 05:18:36] 2025-10-21 03:18:36,058 | INFO     | traces error code: 0
[2025-10-21 05:18:36] 2025-10-21 03:18:36,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 05:18:36] 2025-10-21 03:18:36,109 [wrapper] ==== pilot stdout END ====
[2025-10-21 05:18:36] 2025-10-21 03:18:36,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 05:18:36] 2025-10-21 03:18:36,112 [wrapper] pilotpid: 15865
[2025-10-21 05:18:36] 2025-10-21 03:18:36,113 [wrapper] Pilot exit status: 0
[2025-10-21 05:18:36] 2025-10-21 03:18:36,117 [wrapper] pandaids: 6852949487
[2025-10-21 05:18:36] 2025-10-21 03:18:36,140 [wrapper] cleanup supervisor_pilot 24654 15866
[2025-10-21 05:18:36] 2025-10-21 03:18:36,142 [wrapper] Test setup, not cleaning
[2025-10-21 05:18:36] 2025-10-21 03:18:36,143 [wrapper] apfmon messages muted
[2025-10-21 05:18:36] 2025-10-21 03:18:36,144 [wrapper] ==== wrapper stdout END ====
[2025-10-21 05:18:36] 2025-10-21 03:18:36,145 [wrapper] ==== wrapper stderr END ====
[2025-10-21 05:18:36]  *** Error codes and diagnostics ***
[2025-10-21 05:18:36]     "exeErrorCode": 0,
[2025-10-21 05:18:36]     "exeErrorDiag": "",
[2025-10-21 05:18:36]     "pilotErrorCode": 0,
[2025-10-21 05:18:36]     "pilotErrorDiag": "",
[2025-10-21 05:18:36]  *** Listing of results directory ***
[2025-10-21 05:18:36] total 430260
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user    557409 Oct 21 00:52 pilot3.tar.gz
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      5112 Oct 21 01:22 queuedata.json
[2025-10-21 05:18:36] -rwx------ 1 mf493845 unix-user     36292 Oct 21 01:27 runpilot2-wrapper.sh
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user       100 Oct 21 03:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 05:18:36] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 21 03:27 run_atlas
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user       105 Oct 21 03:27 job.xml
[2025-10-21 05:18:36] -rw-r--r-- 2 mf493845 unix-user 228868138 Oct 21 04:26 EVNT.46771634._002168.pool.root.1
[2025-10-21 05:18:36] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 21 04:26 start_atlas.sh
[2025-10-21 05:18:36] drwxrwx--x 2 mf493845 unix-user       100 Oct 21 04:26 shared
[2025-10-21 05:18:36] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 21 04:26 input.tar.gz
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      6392 Oct 21 04:26 init_data.xml
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user         0 Oct 21 04:26 boinc_setup_complete
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      8192 Oct 21 04:26 boinc_mmap_file
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user         0 Oct 21 04:26 boinc_lockfile
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      2560 Oct 21 04:26 pandaJob.out
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user    978830 Oct 21 04:26 agis_schedconf.cvmfs.json
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user   1560740 Oct 21 04:26 agis_ddmendpoints.agis.ALL.json
[2025-10-21 05:18:36] drwx------ 5 mf493845 unix-user       440 Oct 21 04:26 pilot3
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user 206260238 Oct 21 05:17 HITS.46771637._055320.pool.root.1
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user        95 Oct 21 05:17 pilot_heartbeat.json
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      1011 Oct 21 05:17 memory_monitor_summary.json
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user    300638 Oct 21 05:17 log.46771637._055320.job.log.tgz.1
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      7762 Oct 21 05:17 heartbeat.json
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      6352 Oct 21 05:18 pilotlog.txt
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user    485243 Oct 21 05:18 log.46771637._055320.job.log.1
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user       357 Oct 21 05:18 output.list
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user       620 Oct 21 05:18 runtime_log
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user    808960 Oct 21 05:18 result.tar.gz
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user      9076 Oct 21 05:18 runtime_log.err
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user       642 Oct 21 05:18 o8fNDmKTEV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk6zNDmEvrq8n.diag
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user     22898 Oct 21 05:18 stderr.txt
[2025-10-21 05:18:36] HITS file was successfully produced:
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user 206260238 Oct 21 05:17 shared/HITS.pool.root.1
[2025-10-21 05:18:36]  *** Contents of shared directory: ***
[2025-10-21 05:18:36] total 426304
[2025-10-21 05:18:36] -rw-r--r-- 2 mf493845 unix-user 228868138 Oct 21 04:26 ATLAS.root_0
[2025-10-21 05:18:36] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 21 04:26 start_atlas.sh
[2025-10-21 05:18:36] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 21 04:26 input.tar.gz
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user 206260238 Oct 21 05:17 HITS.pool.root.1
[2025-10-21 05:18:36] -rw------- 1 mf493845 unix-user    808960 Oct 21 05:18 result.tar.gz
05:18:37 (8543): run_atlas exited; CPU time 22135.911452
05:18:37 (8543): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN