Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:12:26 (18881): wrapper (7.7.26015): starting
04:12:26 (18881): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 04:12:26] Arguments: --nthreads 8
[2025-10-21 04:12:26] Threads: 8
[2025-10-21 04:12:26] Checking for CVMFS
[2025-10-21 04:12:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 04:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 04:12:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 04:12:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 04:12:26] 2.11.0.0 4480 13028 58608 151942 3 1 2141874 4096000 0 130560 0 2094577 99.670 1060144 606 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-21 04:12:26] CVMFS is ok
[2025-10-21 04:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 04:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 04:12:26] Further information can be found at the LHC@home message board.
[2025-10-21 04:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 04:12:26] Checking for apptainer binary...
[2025-10-21 04:12:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-21 04:12:26] apptainer is not installed, using version from CVMFS
[2025-10-21 04:12:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 04:12:31] WARNING: Environment variable TMPDIR already has value [/tmp/job_10696151/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node209
[2025-10-21 04:12:31] apptainer works
[2025-10-21 04:12:31] Set ATHENA_PROC_NUMBER=8
[2025-10-21 04:12:31] Set ATHENA_CORE_NUMBER=8
[2025-10-21 04:12:31] Starting ATLAS job with PandaID=6852949199
[2025-10-21 04:12:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10696151/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 05:09:49]  *** The last 200 lines of the pilot log: ***
[2025-10-21 05:09:49]  workdir=None
[2025-10-21 05:09:49] ]
[2025-10-21 05:09:49] 2025-10-21 03:09:03,701 | INFO     | transferring file log.46771637._055050.job.log.tgz.1 from /tmp/job_10696151/atlas/pilot/slots/0/PanDA_Pilot-6852949199/log.46771637._055050.job.log.tgz.1 to /tmp/j
[2025-10-21 05:09:49] 2025-10-21 03:09:03,701 | INFO     | executing command: /usr/bin/env mv /tmp/job_10696151/atlas/pilot/slots/0/PanDA_Pilot-6852949199/log.46771637._055050.job.log.tgz.1 /tmp/job_10696151/atlas/pilot/sl
[2025-10-21 05:09:49] 2025-10-21 03:09:03,709 | INFO     | adding to output.list: log.46771637._055050.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/7d/log.46771637._055050.job.log.tg
[2025-10-21 05:09:49] 2025-10-21 03:09:03,710 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 05:09:49] 2025-10-21 03:09:03,710 | INFO     | summary of transferred files:
[2025-10-21 05:09:49] 2025-10-21 03:09:03,710 | INFO     |  -- lfn=log.46771637._055050.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 05:09:49] 2025-10-21 03:09:03,710 | INFO     | stage-out finished correctly
[2025-10-21 05:09:49] 2025-10-21 03:09:04,126 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | job 6852949199 has state=finished
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | preparing for final server update for job 6852949199 in state='finished'
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | this job has now completed (state=finished)
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | log transfer has been attempted: DONE
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | job 6852949199 has finished - writing final server update
[2025-10-21 05:09:49] 2025-10-21 03:09:04,173 | INFO     | total number of processed events: 400 (read)
[2025-10-21 05:09:49] 2025-10-21 03:09:04,174 | INFO     | executing command: lscpu
[2025-10-21 05:09:49] 2025-10-21 03:09:04,204 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 05:09:49] 2025-10-21 03:09:04,270 | INFO     | time since job start (3387s) is within the limit (172800.0s)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,275 | INFO     | time since job start (3389s) is within the limit (172800.0s)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,296 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 05:09:49] 2025-10-21 03:09:06,300 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2409.15071875
[2025-10-21 05:09:49] 2025-10-21 03:09:06,305 | INFO     | using path: /tmp/job_10696151/atlas/pilot/slots/0/PanDA_Pilot-6852949199/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,306 | INFO     | extracted standard info from prmon json
[2025-10-21 05:09:49] 2025-10-21 03:09:06,306 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 05:09:49] 2025-10-21 03:09:06,306 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 05:09:49] 2025-10-21 03:09:06,306 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 05:09:49] 2025-10-21 03:09:06,306 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | fitting pss+swap vs Time
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | sum of square deviations: 36465800.0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | sum of deviations: 803717334.0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | mean x: 1761014550.0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | mean y: 2540038.102040816
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | -- intersect: -38810756784.15908
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | intersect: -38810756784.15908
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | chi2: 0.000994905472913558
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | -- intersect: -38810756784.15908
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | current memory leak: 22.04 B/s (using 49 data points, chi2=0.00)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,307 | INFO     | could have reported an average CPU frequency of 2569 MHz (5 samples)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | ..............................
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . Timing measurements:
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . get job = 0 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . initial setup = 1 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . payload setup = 8 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . stage-in = 0 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . payload execution = 3361 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . stage-out = 0 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | . log creation = 0 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,308 | INFO     | ..............................
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | 
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | job summary report
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | --------------------------------------------------
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | PanDA job id: 6852949199
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | task id: 46771637
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | errors: (none)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | pilot state: finished 
[2025-10-21 05:09:49] 2025-10-21 03:09:06,358 | INFO     | transexitcode: 0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | exeerrorcode: 0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | exeerrordiag: 
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | exitcode: 0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | exitmsg: OK
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | cpuconsumptiontime: 23389 s
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | nevents: 400
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | neventsw: 0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | pid: 411
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | pgrp: 411
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | corecount: 8
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | event service: False
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | sizes: {0: 2349057, 2: 2349319, 10: 2349347, 3374: 2384026, 3375: 2384026, 3377: 2384252}
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | --------------------------------------------------
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | 
[2025-10-21 05:09:49] 2025-10-21 03:09:06,359 | INFO     | executing command: ls -lF /tmp/job_10696151/atlas/pilot/slots/0
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | job 6852949199 has completed (purged errors)
[2025-10-21 05:09:49] 2025-10-21 03:09:06,369 | INFO     | overall cleanup function is called
[2025-10-21 05:09:49] 2025-10-21 03:09:07,375 | INFO     | --- collectZombieJob: --- 10, [411]
[2025-10-21 05:09:49] 2025-10-21 03:09:07,375 | INFO     | zombie collector waiting for pid 411
[2025-10-21 05:09:49] 2025-10-21 03:09:07,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 05:09:49] 2025-10-21 03:09:07,375 | INFO     | collected zombie processes
[2025-10-21 05:09:49] 2025-10-21 03:09:07,375 | INFO     | will attempt to kill all subprocesses of pid=411
[2025-10-21 05:09:49] 2025-10-21 03:09:07,443 | INFO     | PID=23541 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 05:09:49] 2025-10-21 03:09:07,443 | INFO     | .. there are 2 such processes running
[2025-10-21 05:09:49] 2025-10-21 03:09:07,511 | INFO     | process IDs to be killed: [411] (in reverse order)
[2025-10-21 05:09:49] 2025-10-21 03:09:07,542 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 05:09:49] 2025-10-21 03:09:07,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 05:09:49] 2025-10-21 03:09:07,545 | INFO     | did not find any defunct processes belonging to 411
[2025-10-21 05:09:49] 2025-10-21 03:09:07,548 | INFO     | did not find any defunct processes belonging to 411
[2025-10-21 05:09:49] 2025-10-21 03:09:07,548 | INFO     | ready for new job
[2025-10-21 05:09:49] 2025-10-21 03:09:07,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 05:09:49] 2025-10-21 03:09:07,549 | INFO     | ***************************************
[2025-10-21 05:09:49] 2025-10-21 03:09:07,549 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 05:09:49] 2025-10-21 03:09:07,549 | INFO     | ***************************************
[2025-10-21 05:09:49] 2025-10-21 03:09:07,549 | INFO     | 
[2025-10-21 05:09:49] 2025-10-21 03:09:07,562 | INFO     | architecture information:
[2025-10-21 05:09:49] 2025-10-21 03:09:07,563 | INFO     | executing command: cat /etc/os-release
[2025-10-21 05:09:49] 2025-10-21 03:09:07,568 | INFO     | cat /etc/os-release:
[2025-10-21 05:09:49] NAME="CentOS Linux"
[2025-10-21 05:09:49] VERSION="7 (Core)"
[2025-10-21 05:09:49] ID="centos"
[2025-10-21 05:09:49] ID_LIKE="rhel fedora"
[2025-10-21 05:09:49] VERSION_ID="7"
[2025-10-21 05:09:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 05:09:49] ANSI_COLOR="0;31"
[2025-10-21 05:09:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 05:09:49] HOME_URL="https://www.centos.org/"
[2025-10-21 05:09:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 05:09:49] 
[2025-10-21 05:09:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 05:09:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 05:09:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 05:09:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 05:09:49] 
[2025-10-21 05:09:49] 2025-10-21 03:09:07,568 | INFO     | ***************************************
[2025-10-21 05:09:49] 2025-10-21 03:09:08,071 | INFO     | executing command: df -mP /tmp/job_10696151/atlas/pilot/slots/0
[2025-10-21 05:09:49] 2025-10-21 03:09:08,077 | INFO     | sufficient remaining disk space (228029628416 B)
[2025-10-21 05:09:49] 2025-10-21 03:09:08,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 05:09:49] 2025-10-21 03:09:08,077 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 05:09:49] 2025-10-21 03:09:08,077 | INFO     | update_server=False
[2025-10-21 05:09:49] 2025-10-21 03:09:08,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 05:09:49] 2025-10-21 03:09:08,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 05:09:49] 2025-10-21 03:09:08,078 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-21 05:09:49] 2025-10-21 03:09:08,078 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 05:09:49] 2025-10-21 03:09:08,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 05:09:49] 2025-10-21 03:09:08,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 05:09:49] 2025-10-21 03:09:08,486 | INFO     | all data control threads have been joined
[2025-10-21 05:09:49] 2025-10-21 03:09:08,604 | WARNING  | process 411 can no longer be monitored (due to stat problems) - aborting
[2025-10-21 05:09:49] 2025-10-21 03:09:08,678 | INFO     | using path: /tmp/job_10696151/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:09:49] 2025-10-21 03:09:08,678 | INFO     | using path: /tmp/job_10696151/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:09:49] 2025-10-21 03:09:08,679 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-21 05:09:49] 2025-10-21 03:09:08,679 | WARNING  | maxPSS not found in memory monitor output
[2025-10-21 05:09:49] 2025-10-21 03:09:08,679 | INFO     | skipping file size check of payload stdout file (/tmp/job_10696151/atlas/pilot/slots/0/PanDA_Pilot-6852949199/payload.stdout) since it has not been created yet
[2025-10-21 05:09:49] 2025-10-21 03:09:08,679 | INFO     | executing command: df -mP /tmp/job_10696151/atlas/pilot/slots/0
[2025-10-21 05:09:49] 2025-10-21 03:09:08,685 | INFO     | sufficient remaining disk space (228029628416 B)
[2025-10-21 05:09:49] 2025-10-21 03:09:08,685 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-21 05:09:49] 2025-10-21 03:09:08,685 | INFO     | output file size check: skipping output file /tmp/job_10696151/atlas/pilot/slots/0/PanDA_Pilot-6852949199/HITS.46771637._055050.pool.root.1 since it does not exist
[2025-10-21 05:09:49] 2025-10-21 03:09:08,777 | INFO     | number of running child processes to parent process 411: 1
[2025-10-21 05:09:49] 2025-10-21 03:09:08,777 | INFO     | maximum number of monitored processes: 6
[2025-10-21 05:09:49] 2025-10-21 03:09:08,777 | INFO     | aborting job monitoring since job object (job id=6852949199) has expired
[2025-10-21 05:09:49] 2025-10-21 03:09:08,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 05:09:49] 2025-10-21 03:09:08,777 | INFO     | will abort loop
[2025-10-21 05:09:49] 2025-10-21 03:09:08,812 | INFO     | all payload control threads have been joined
[2025-10-21 05:09:49] 2025-10-21 03:09:09,047 | INFO     | all job control threads have been joined
[2025-10-21 05:09:49] 2025-10-21 03:09:09,083 | INFO     | [job] retrieve thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,083 | INFO     | [job] queue monitor thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,138 | INFO     | [payload] validate_post thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,189 | INFO     | [data] copytool_in thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,269 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 05:09:49] 2025-10-21 03:09:09,491 | INFO     | [data] control thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,703 | INFO     | [payload] failed_post thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,782 | INFO     | [job] job monitor thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:09,817 | INFO     | [payload] control thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:10,052 | INFO     | [job] control thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:10,055 | INFO     | [job] validate thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:10,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 05:09:49] 2025-10-21 03:09:10,189 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:10,290 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:10,328 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:11,274 | INFO     | [data] copytool_out thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:14,183 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:18,378 | INFO     | job.realtimelogging is not enabled
[2025-10-21 05:09:49] 2025-10-21 03:09:19,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 05:09:49] 2025-10-21 03:09:42,159 | INFO     | [monitor] cgroup control has ended
[2025-10-21 05:09:49] 2025-10-21 03:09:44,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456066770688)>']
[2025-10-21 05:09:49] 2025-10-21 03:09:44,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 05:09:49] 2025-10-21 03:09:44,255 | INFO     | [monitor] control thread has ended
[2025-10-21 05:09:49] 2025-10-21 03:09:49,082 | INFO     | all workflow threads have been joined
[2025-10-21 05:09:49] 2025-10-21 03:09:49,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 05:09:49] 2025-10-21 03:09:49,082 | INFO     | traces error code: 0
[2025-10-21 05:09:49] 2025-10-21 03:09:49,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 05:09:49] 2025-10-21 03:09:49,135 [wrapper] ==== pilot stdout END ====
[2025-10-21 05:09:49] 2025-10-21 03:09:49,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 05:09:49] 2025-10-21 03:09:49,138 [wrapper] pilotpid: 23541
[2025-10-21 05:09:49] 2025-10-21 03:09:49,139 [wrapper] Pilot exit status: 0
[2025-10-21 05:09:49] 2025-10-21 03:09:49,143 [wrapper] pandaids: 6852949199
[2025-10-21 05:09:49] 2025-10-21 03:09:49,162 [wrapper] cleanup supervisor_pilot 24620 23542
[2025-10-21 05:09:49] 2025-10-21 03:09:49,164 [wrapper] Test setup, not cleaning
[2025-10-21 05:09:49] 2025-10-21 03:09:49,165 [wrapper] apfmon messages muted
[2025-10-21 05:09:49] 2025-10-21 03:09:49,166 [wrapper] ==== wrapper stdout END ====
[2025-10-21 05:09:49] 2025-10-21 03:09:49,167 [wrapper] ==== wrapper stderr END ====
[2025-10-21 05:09:49]  *** Error codes and diagnostics ***
[2025-10-21 05:09:49]     "exeErrorCode": 0,
[2025-10-21 05:09:49]     "exeErrorDiag": "",
[2025-10-21 05:09:49]     "pilotErrorCode": 0,
[2025-10-21 05:09:49]     "pilotErrorDiag": "",
[2025-10-21 05:09:49]  *** Listing of results directory ***
[2025-10-21 05:09:49] total 433092
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user    557409 Oct 21 00:52 pilot3.tar.gz
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      5112 Oct 21 01:12 queuedata.json
[2025-10-21 05:09:49] -rwx------ 1 mf493845 unix-user     36292 Oct 21 01:14 runpilot2-wrapper.sh
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user       100 Oct 21 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 05:09:49] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 21 03:14 run_atlas
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user       105 Oct 21 03:14 job.xml
[2025-10-21 05:09:49] -rw-r--r-- 2 mf493845 unix-user 227438522 Oct 21 04:12 EVNT.46771634._002157.pool.root.1
[2025-10-21 05:09:49] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 21 04:12 start_atlas.sh
[2025-10-21 05:09:49] drwxrwx--x 2 mf493845 unix-user       100 Oct 21 04:12 shared
[2025-10-21 05:09:49] -rw-r--r-- 2 mf493845 unix-user    569682 Oct 21 04:12 input.tar.gz
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      6394 Oct 21 04:12 init_data.xml
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user         0 Oct 21 04:12 boinc_setup_complete
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      8192 Oct 21 04:12 boinc_mmap_file
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user         0 Oct 21 04:12 boinc_lockfile
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      2560 Oct 21 04:12 pandaJob.out
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user    978830 Oct 21 04:12 agis_schedconf.cvmfs.json
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user   1560740 Oct 21 04:12 agis_ddmendpoints.agis.ALL.json
[2025-10-21 05:09:49] drwx------ 5 mf493845 unix-user       440 Oct 21 04:12 pilot3
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user        95 Oct 21 05:08 pilot_heartbeat.json
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user 210491736 Oct 21 05:08 HITS.46771637._055050.pool.root.1
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      1019 Oct 21 05:09 memory_monitor_summary.json
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user    310865 Oct 21 05:09 log.46771637._055050.job.log.tgz.1
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      7771 Oct 21 05:09 heartbeat.json
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      6191 Oct 21 05:09 pilotlog.txt
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user    528631 Oct 21 05:09 log.46771637._055050.job.log.1
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user       357 Oct 21 05:09 output.list
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user       620 Oct 21 05:09 runtime_log
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user    860160 Oct 21 05:09 result.tar.gz
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user      9076 Oct 21 05:09 runtime_log.err
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user       643 Oct 21 05:09 HOJKDmzFEV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmM3zNDmGcf1Mm.diag
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user     22894 Oct 21 05:09 stderr.txt
[2025-10-21 05:09:49] HITS file was successfully produced:
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user 210491736 Oct 21 05:08 shared/HITS.pool.root.1
[2025-10-21 05:09:49]  *** Contents of shared directory: ***
[2025-10-21 05:09:49] total 429084
[2025-10-21 05:09:49] -rw-r--r-- 2 mf493845 unix-user 227438522 Oct 21 04:12 ATLAS.root_0
[2025-10-21 05:09:49] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 21 04:12 start_atlas.sh
[2025-10-21 05:09:49] -rw-r--r-- 2 mf493845 unix-user    569682 Oct 21 04:12 input.tar.gz
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user 210491736 Oct 21 05:08 HITS.pool.root.1
[2025-10-21 05:09:49] -rw------- 1 mf493845 unix-user    860160 Oct 21 05:09 result.tar.gz
05:09:51 (18881): run_atlas exited; CPU time 23444.306305
05:09:51 (18881): called boinc_finish(0)

</stderr_txt>
]]>

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