Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:12:57 (25487): wrapper (7.7.26015): starting
04:12:57 (25487): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 04:12:57] Arguments: --nthreads 8
[2025-10-21 04:12:57] Threads: 8
[2025-10-21 04:12:57] Checking for CVMFS
[2025-10-21 04:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 04:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 04:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 04:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 04:12:58] 2.11.0.0 4656 13697 63440 151942 1 186 2484951 4096000 2232 130560 0 1731629 99.591 1125604 604 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-21 04:12:58] CVMFS is ok
[2025-10-21 04:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 04:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 04:12:58] Further information can be found at the LHC@home message board.
[2025-10-21 04:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 04:12:58] Checking for apptainer binary...
[2025-10-21 04:12:58] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-21 04:12:58] apptainer is not installed, using version from CVMFS
[2025-10-21 04:12:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 04:12:58] WARNING: Environment variable TMPDIR already has value [/tmp/job_10696127/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node122
[2025-10-21 04:12:58] apptainer works
[2025-10-21 04:12:58] Set ATHENA_PROC_NUMBER=8
[2025-10-21 04:12:58] Set ATHENA_CORE_NUMBER=8
[2025-10-21 04:12:58] Starting ATLAS job with PandaID=6852949038
[2025-10-21 04:12:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10696127/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 05:16:23]  *** The last 200 lines of the pilot log: ***
[2025-10-21 05:16:23]  replicas=None
[2025-10-21 05:16:23]  scope=mc23_13p6TeV
[2025-10-21 05:16:23]  status=None
[2025-10-21 05:16:23]  status_code=0
[2025-10-21 05:16:23]  storage_token=
[2025-10-21 05:16:23]  surl=/tmp/job_10696127/atlas/pilot/slots/0/PanDA_Pilot-6852949038/log.46771637._054890.job.log.tgz.1
[2025-10-21 05:16:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/53/log.46771637._054890.job.log.tgz.1
[2025-10-21 05:16:23]  workdir=None
[2025-10-21 05:16:23] ]
[2025-10-21 05:16:23] 2025-10-21 03:15:44,611 | INFO     | transferring file log.46771637._054890.job.log.tgz.1 from /tmp/job_10696127/atlas/pilot/slots/0/PanDA_Pilot-6852949038/log.46771637._054890.job.log.tgz.1 to /tmp/j
[2025-10-21 05:16:23] 2025-10-21 03:15:44,611 | INFO     | executing command: /usr/bin/env mv /tmp/job_10696127/atlas/pilot/slots/0/PanDA_Pilot-6852949038/log.46771637._054890.job.log.tgz.1 /tmp/job_10696127/atlas/pilot/sl
[2025-10-21 05:16:23] 2025-10-21 03:15:44,620 | INFO     | adding to output.list: log.46771637._054890.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/53/log.46771637._054890.job.log.tg
[2025-10-21 05:16:23] 2025-10-21 03:15:44,621 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 05:16:23] 2025-10-21 03:15:44,621 | INFO     | summary of transferred files:
[2025-10-21 05:16:23] 2025-10-21 03:15:44,621 | INFO     |  -- lfn=log.46771637._054890.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 05:16:23] 2025-10-21 03:15:44,621 | INFO     | stage-out finished correctly
[2025-10-21 05:16:23] 2025-10-21 03:15:46,177 | INFO     | time since job start (3763s) is within the limit (172800.0s)
[2025-10-21 05:16:23] 2025-10-21 03:15:46,192 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 05:16:23] 2025-10-21 03:15:46,831 | INFO     | monitor loop #271: job 0:6852949038 is in state 'finished'
[2025-10-21 05:16:23] 2025-10-21 03:15:46,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 05:16:23] 2025-10-21 03:15:47,826 | INFO     | job 6852949038 has state=finished
[2025-10-21 05:16:23] 2025-10-21 03:15:47,826 | INFO     | preparing for final server update for job 6852949038 in state='finished'
[2025-10-21 05:16:23] 2025-10-21 03:15:48,182 | INFO     | time since job start (3765s) is within the limit (172800.0s)
[2025-10-21 05:16:23] 2025-10-21 03:15:48,390 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-21 05:16:23] 2025-10-21 03:15:48,390 | INFO     | this job has now completed (state=finished)
[2025-10-21 05:16:23] 2025-10-21 03:15:48,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 05:16:23] 2025-10-21 03:15:48,390 | INFO     | log transfer has been attempted: DONE
[2025-10-21 05:16:23] 2025-10-21 03:15:48,390 | INFO     | job 6852949038 has finished - writing final server update
[2025-10-21 05:16:23] 2025-10-21 03:15:48,390 | INFO     | total number of processed events: 400 (read)
[2025-10-21 05:16:23] 2025-10-21 03:15:48,391 | INFO     | executing command: lscpu
[2025-10-21 05:16:23] 2025-10-21 03:15:48,431 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 05:16:23] 2025-10-21 03:15:49,337 | INFO     | monitor loop #272: job 0:6852949038 is in state 'finished'
[2025-10-21 05:16:23] 2025-10-21 03:15:49,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,187 | INFO     | time since job start (3767s) is within the limit (172800.0s)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,416 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 05:16:23] 2025-10-21 03:15:50,436 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2414.7848750000003
[2025-10-21 05:16:23] 2025-10-21 03:15:50,458 | INFO     | using path: /tmp/job_10696127/atlas/pilot/slots/0/PanDA_Pilot-6852949038/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,459 | INFO     | extracted standard info from prmon json
[2025-10-21 05:16:23] 2025-10-21 03:15:50,459 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 05:16:23] 2025-10-21 03:15:50,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 05:16:23] 2025-10-21 03:15:50,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 05:16:23] 2025-10-21 03:15:50,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | fitting pss+swap vs Time
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | sum of square deviations: 51573060.0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | sum of deviations: 429006472.9999999
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | mean x: 1761014754.0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | mean y: 2530435.7636363637
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | -- intersect: -14646333302.678535
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | intersect: -14646333302.678535
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | chi2: 0.00022887710467717396
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | -- intersect: -14646333302.678535
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | current memory leak: 8.32 B/s (using 55 data points, chi2=0.00)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,460 | INFO     | could have reported an average CPU frequency of 2428 MHz (6 samples)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | ..............................
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . Timing measurements:
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . get job = 0 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . initial setup = 1 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . payload setup = 2 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . stage-in = 0 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . payload execution = 3740 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . stage-out = 0 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | . log creation = 0 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,461 | INFO     | ..............................
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | 
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | job summary report
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | --------------------------------------------------
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | PanDA job id: 6852949038
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | task id: 46771637
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | errors: (none)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | pilot state: finished 
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | transexitcode: 0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | exeerrorcode: 0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | exeerrordiag: 
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | exitcode: 0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | exitmsg: OK
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | cpuconsumptiontime: 27494 s
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | nevents: 400
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | neventsw: 0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | pid: 22220
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | pgrp: 22220
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | corecount: 8
[2025-10-21 05:16:23] 2025-10-21 03:15:50,512 | INFO     | event service: False
[2025-10-21 05:16:23] 2025-10-21 03:15:50,513 | INFO     | sizes: {0: 2349057, 2: 2349319, 11: 2349347, 3747: 2375220, 3748: 2384248, 3749: 2384304, 3754: 2384626}
[2025-10-21 05:16:23] 2025-10-21 03:15:50,513 | INFO     | --------------------------------------------------
[2025-10-21 05:16:23] 2025-10-21 03:15:50,513 | INFO     | 
[2025-10-21 05:16:23] 2025-10-21 03:15:50,513 | INFO     | executing command: ls -lF /tmp/job_10696127/atlas/pilot/slots/0
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | job 6852949038 has completed (purged errors)
[2025-10-21 05:16:23] 2025-10-21 03:15:50,523 | INFO     | overall cleanup function is called
[2025-10-21 05:16:23] 2025-10-21 03:15:51,529 | INFO     | --- collectZombieJob: --- 10, [22220]
[2025-10-21 05:16:23] 2025-10-21 03:15:51,529 | INFO     | zombie collector waiting for pid 22220
[2025-10-21 05:16:23] 2025-10-21 03:15:51,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 05:16:23] 2025-10-21 03:15:51,529 | INFO     | collected zombie processes
[2025-10-21 05:16:23] 2025-10-21 03:15:51,529 | INFO     | will attempt to kill all subprocesses of pid=22220
[2025-10-21 05:16:23] 2025-10-21 03:15:51,684 | INFO     | process IDs to be killed: [22220] (in reverse order)
[2025-10-21 05:16:23] 2025-10-21 03:15:51,731 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 05:16:23] 2025-10-21 03:15:51,731 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 05:16:23] 2025-10-21 03:15:51,737 | INFO     | did not find any defunct processes belonging to 22220
[2025-10-21 05:16:23] 2025-10-21 03:15:51,742 | INFO     | did not find any defunct processes belonging to 22220
[2025-10-21 05:16:23] 2025-10-21 03:15:51,742 | INFO     | ready for new job
[2025-10-21 05:16:23] 2025-10-21 03:15:51,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 05:16:23] 2025-10-21 03:15:51,743 | INFO     | ***************************************
[2025-10-21 05:16:23] 2025-10-21 03:15:51,743 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 05:16:23] 2025-10-21 03:15:51,743 | INFO     | ***************************************
[2025-10-21 05:16:23] 2025-10-21 03:15:51,743 | INFO     | 
[2025-10-21 05:16:23] 2025-10-21 03:15:51,758 | INFO     | architecture information:
[2025-10-21 05:16:23] 2025-10-21 03:15:51,758 | INFO     | executing command: cat /etc/os-release
[2025-10-21 05:16:23] 2025-10-21 03:15:51,766 | INFO     | cat /etc/os-release:
[2025-10-21 05:16:23] NAME="CentOS Linux"
[2025-10-21 05:16:23] VERSION="7 (Core)"
[2025-10-21 05:16:23] ID="centos"
[2025-10-21 05:16:23] ID_LIKE="rhel fedora"
[2025-10-21 05:16:23] VERSION_ID="7"
[2025-10-21 05:16:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 05:16:23] ANSI_COLOR="0;31"
[2025-10-21 05:16:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 05:16:23] HOME_URL="https://www.centos.org/"
[2025-10-21 05:16:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 05:16:23] 
[2025-10-21 05:16:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 05:16:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 05:16:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 05:16:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 05:16:23] 
[2025-10-21 05:16:23] 2025-10-21 03:15:51,766 | INFO     | ***************************************
[2025-10-21 05:16:23] 2025-10-21 03:15:52,269 | INFO     | executing command: df -mP /tmp/job_10696127/atlas/pilot/slots/0
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | INFO     | sufficient remaining disk space (227177136128 B)
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | INFO     | update_server=False
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 05:16:23] 2025-10-21 03:15:52,276 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 05:16:23] 2025-10-21 03:15:52,686 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 05:16:23] 2025-10-21 03:15:52,834 | INFO     | all payload control threads have been joined
[2025-10-21 05:16:23] 2025-10-21 03:15:52,845 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 05:16:23] 2025-10-21 03:15:52,845 | INFO     | aborting loop
[2025-10-21 05:16:23] 2025-10-21 03:15:52,866 | INFO     | all data control threads have been joined
[2025-10-21 05:16:23] 2025-10-21 03:15:53,281 | INFO     | [job] retrieve thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,281 | INFO     | [job] queue monitor thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,583 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,746 | INFO     | [data] copytool_in thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,840 | INFO     | [payload] control thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,850 | INFO     | [job] job monitor thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,872 | INFO     | [data] control thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,895 | INFO     | [payload] failed_post thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:53,971 | INFO     | all job control threads have been joined
[2025-10-21 05:16:23] 2025-10-21 03:15:54,379 | INFO     | [job] validate thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:54,443 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:54,521 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:54,528 | INFO     | [payload] validate_post thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:54,691 | INFO     | [data] copytool_out thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:54,976 | INFO     | [job] control thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:15:56,282 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:16:02,830 | INFO     | job.realtimelogging is not enabled
[2025-10-21 05:16:23] 2025-10-21 03:16:03,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 05:16:23] 2025-10-21 03:16:09,487 | INFO     | [monitor] cgroup control has ended
[2025-10-21 05:16:23] 2025-10-21 03:16:11,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-21 05:16:23] 2025-10-21 03:16:16,113 | INFO     | all workflow threads have been joined
[2025-10-21 05:16:23] 2025-10-21 03:16:16,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 05:16:23] 2025-10-21 03:16:16,113 | INFO     | traces error code: 0
[2025-10-21 05:16:23] 2025-10-21 03:16:16,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | INFO     | PID=6357 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | INFO     | .. there are 2 such processes running
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | CRITICAL | thread 'MainThread' is not alive
[2025-10-21 05:16:23] 2025-10-21 03:16:23,457 | INFO     | [monitor] control thread has ended
[2025-10-21 05:16:23] 2025-10-21 03:16:23,515 [wrapper] ==== pilot stdout END ====
[2025-10-21 05:16:23] 2025-10-21 03:16:23,516 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 05:16:23] 2025-10-21 03:16:23,517 [wrapper] pilotpid: 6357
[2025-10-21 05:16:23] 2025-10-21 03:16:23,519 [wrapper] Pilot exit status: 0
[2025-10-21 05:16:23] 2025-10-21 03:16:23,523 [wrapper] pandaids: 6852949038
[2025-10-21 05:16:23] 2025-10-21 03:16:23,555 [wrapper] cleanup supervisor_pilot 11467 6358
[2025-10-21 05:16:23] 2025-10-21 03:16:23,556 [wrapper] Test setup, not cleaning
[2025-10-21 05:16:23] 2025-10-21 03:16:23,558 [wrapper] apfmon messages muted
[2025-10-21 05:16:23] 2025-10-21 03:16:23,559 [wrapper] ==== wrapper stdout END ====
[2025-10-21 05:16:23] 2025-10-21 03:16:23,560 [wrapper] ==== wrapper stderr END ====
[2025-10-21 05:16:23]  *** Error codes and diagnostics ***
[2025-10-21 05:16:23]     "exeErrorCode": 0,
[2025-10-21 05:16:23]     "exeErrorDiag": "",
[2025-10-21 05:16:23]     "pilotErrorCode": 0,
[2025-10-21 05:16:23]     "pilotErrorDiag": "",
[2025-10-21 05:16:23]  *** Listing of results directory ***
[2025-10-21 05:16:23] total 434992
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user    557409 Oct 21 00:52 pilot3.tar.gz
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      5112 Oct 21 01:09 queuedata.json
[2025-10-21 05:16:23] -rwx------ 1 mf493845 unix-user     36292 Oct 21 01:10 runpilot2-wrapper.sh
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user       100 Oct 21 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 05:16:23] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 21 03:14 run_atlas
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user       105 Oct 21 03:14 job.xml
[2025-10-21 05:16:23] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 21 04:12 start_atlas.sh
[2025-10-21 05:16:23] drwxrwx--x 2 mf493845 unix-user       100 Oct 21 04:12 shared
[2025-10-21 05:16:23] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 21 04:12 input.tar.gz
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      6393 Oct 21 04:12 init_data.xml
[2025-10-21 05:16:23] -rw-r--r-- 2 mf493845 unix-user 228774941 Oct 21 04:12 EVNT.46771634._002069.pool.root.1
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user         0 Oct 21 04:12 boinc_setup_complete
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      8192 Oct 21 04:12 boinc_mmap_file
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user         0 Oct 21 04:12 boinc_lockfile
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      2560 Oct 21 04:12 pandaJob.out
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user    978830 Oct 21 04:13 agis_schedconf.cvmfs.json
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user   1560740 Oct 21 04:13 agis_ddmendpoints.agis.ALL.json
[2025-10-21 05:16:23] drwx------ 5 mf493845 unix-user       440 Oct 21 04:13 pilot3
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user 211034147 Oct 21 05:15 HITS.46771637._054890.pool.root.1
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user        95 Oct 21 05:15 pilot_heartbeat.json
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      1014 Oct 21 05:15 memory_monitor_summary.json
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user    304051 Oct 21 05:15 log.46771637._054890.job.log.tgz.1
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      7760 Oct 21 05:15 heartbeat.json
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user       889 Oct 21 05:16 pilotlog.txt
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user    568372 Oct 21 05:16 log.46771637._054890.job.log.1
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user       357 Oct 21 05:16 output.list
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user       620 Oct 21 05:16 runtime_log
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user    890880 Oct 21 05:16 result.tar.gz
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user      9076 Oct 21 05:16 runtime_log.err
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user       640 Oct 21 05:16 cQRLDmPCEV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLCeMDmn4EAIo.diag
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user     22259 Oct 21 05:16 stderr.txt
[2025-10-21 05:16:23] HITS file was successfully produced:
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user 211034147 Oct 21 05:15 shared/HITS.pool.root.1
[2025-10-21 05:16:23]  *** Contents of shared directory: ***
[2025-10-21 05:16:23] total 430956
[2025-10-21 05:16:23] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 21 04:12 start_atlas.sh
[2025-10-21 05:16:23] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 21 04:12 input.tar.gz
[2025-10-21 05:16:23] -rw-r--r-- 2 mf493845 unix-user 228774941 Oct 21 04:12 ATLAS.root_0
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user 211034147 Oct 21 05:15 HITS.pool.root.1
[2025-10-21 05:16:23] -rw------- 1 mf493845 unix-user    890880 Oct 21 05:16 result.tar.gz
05:16:24 (25487): run_atlas exited; CPU time 27601.573241
05:16:24 (25487): called boinc_finish(0)

</stderr_txt>
]]>

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