Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:35:50 (12127): wrapper (7.7.26015): starting
13:35:50 (12127): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 13:35:50] Arguments: --nthreads 8
[2025-10-21 13:35:50] Threads: 8
[2025-10-21 13:35:50] Checking for CVMFS
[2025-10-21 13:35:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 13:35:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 13:35:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 13:35:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 13:35:52] 2.11.2.0 2311 233457 139696 151957 0 60 13573883 25165824 4632 130560 0 142430975 99.871 78459719 3497 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-21 13:35:52] CVMFS is ok
[2025-10-21 13:35:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 13:35:53] Checking for apptainer binary...
[2025-10-21 13:35:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 13:35:53] Running /usr/bin/apptainer --version
[2025-10-21 13:35:53] apptainer version 1.3.2-1.el7
[2025-10-21 13:35:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 13:35:59] cg-vwn480.simple-grid.lan
[2025-10-21 13:35:59] apptainer works
[2025-10-21 13:35:59] Set ATHENA_PROC_NUMBER=8
[2025-10-21 13:35:59] Set ATHENA_CORE_NUMBER=8
[2025-10-21 13:35:59] Starting ATLAS job with PandaID=6852942430
[2025-10-21 13:35:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 17:48:29]  *** The last 200 lines of the pilot log: ***
[2025-10-21 17:48:29] 2025-10-21 15:47:24,569 | INFO     | sum of square deviations: 4024149870.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,571 | INFO     | sum of deviations: 87628482134.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,571 | INFO     | mean x: 1761054413.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,571 | INFO     | mean y: 2456475.4170212764
[2025-10-21 17:48:29] 2025-10-21 15:47:24,571 | INFO     | -- intersect: -38345649373.47681
[2025-10-21 17:48:29] 2025-10-21 15:47:24,571 | INFO     | intersect: -38345649373.47681
[2025-10-21 17:48:29] 2025-10-21 15:47:24,572 | INFO     | chi2: 5.418099521950961
[2025-10-21 17:48:29] 2025-10-21 15:47:24,572 | INFO     | sum of square deviations: 3772712597.5
[2025-10-21 17:48:29] 2025-10-21 15:47:24,574 | INFO     | sum of deviations: 85611445428.49998
[2025-10-21 17:48:29] 2025-10-21 15:47:24,574 | INFO     | mean x: 1761054260.5
[2025-10-21 17:48:29] 2025-10-21 15:47:24,574 | INFO     | mean y: 2455252.039130435
[2025-10-21 17:48:29] 2025-10-21 15:47:24,574 | INFO     | -- intersect: -39959878698.16131
[2025-10-21 17:48:29] 2025-10-21 15:47:24,574 | INFO     | intersect: -39959878698.16131
[2025-10-21 17:48:29] 2025-10-21 15:47:24,575 | INFO     | chi2: 5.426779816091122
[2025-10-21 17:48:29] 2025-10-21 15:47:24,575 | INFO     | current chi2=5.426779816091122 (change=-0.16020920444507875 %)
[2025-10-21 17:48:29] 2025-10-21 15:47:24,575 | INFO     | right removable region: 229
[2025-10-21 17:48:29] 2025-10-21 15:47:24,575 | INFO     | sum of square deviations: 3772712597.5
[2025-10-21 17:48:29] 2025-10-21 15:47:24,577 | INFO     | sum of deviations: 9537846478.999996
[2025-10-21 17:48:29] 2025-10-21 15:47:24,577 | INFO     | mean x: 1761054565.5
[2025-10-21 17:48:29] 2025-10-21 15:47:24,577 | INFO     | mean y: 2503788.6869565216
[2025-10-21 17:48:29] 2025-10-21 15:47:24,577 | INFO     | -- intersect: -4449642419.85578
[2025-10-21 17:48:29] 2025-10-21 15:47:24,578 | INFO     | intersect: -4449642419.85578
[2025-10-21 17:48:29] 2025-10-21 15:47:24,578 | INFO     | chi2: 1.0302316395790703
[2025-10-21 17:48:29] 2025-10-21 15:47:24,578 | INFO     | current chi2=1.0302316395790703 (change=80.98536884741272 %)
[2025-10-21 17:48:29] 2025-10-21 15:47:24,578 | INFO     | sum of square deviations: 3531973200.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,580 | INFO     | sum of deviations: -20110081487.000004
[2025-10-21 17:48:29] 2025-10-21 15:47:24,580 | INFO     | mean x: 1761054718.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,580 | INFO     | mean y: 2522418.1422222224
[2025-10-21 17:48:29] 2025-10-21 15:47:24,580 | INFO     | -- intersect: 10029482385.461853
[2025-10-21 17:48:29] 2025-10-21 15:47:24,581 | INFO     | intersect: 10029482385.461853
[2025-10-21 17:48:29] 2025-10-21 15:47:24,581 | INFO     | chi2: 0.1388430563828725
[2025-10-21 17:48:29] 2025-10-21 15:47:24,581 | INFO     | current chi2=0.1388430563828725 (change=86.52312246597272 %)
[2025-10-21 17:48:29] 2025-10-21 15:47:24,581 | INFO     | sum of square deviations: 3301699115.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,583 | INFO     | sum of deviations: -15538403059.000006
[2025-10-21 17:48:29] 2025-10-21 15:47:24,583 | INFO     | mean x: 1761054870.5
[2025-10-21 17:48:29] 2025-10-21 15:47:24,583 | INFO     | mean y: 2519363.272727273
[2025-10-21 17:48:29] 2025-10-21 15:47:24,583 | INFO     | -- intersect: 8290367357.212072
[2025-10-21 17:48:29] 2025-10-21 15:47:24,583 | INFO     | intersect: 8290367357.212072
[2025-10-21 17:48:29] 2025-10-21 15:47:24,584 | INFO     | chi2: 0.12054701897139178
[2025-10-21 17:48:29] 2025-10-21 15:47:24,584 | INFO     | current chi2=0.12054701897139178 (change=13.177495431264289 %)
[2025-10-21 17:48:29] 2025-10-21 15:47:24,584 | INFO     | left removable region: 30
[2025-10-21 17:48:29] 2025-10-21 15:47:24,584 | INFO     | sum of square deviations: 2443580700.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,585 | INFO     | sum of deviations: 5289155975.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | mean x: 1761055145.0
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | mean y: 2503878.3467336684
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | -- intersect: -3809318396.4327493
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | intersect: -3809318396.4327493
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | chi2: 0.0002920896553407684
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | -- intersect: -3809318396.4327493
[2025-10-21 17:48:29] 2025-10-21 15:47:24,586 | INFO     | current memory leak: 2.16 B/s (using 199 data points, chi2=0.00)
[2025-10-21 17:48:29] 2025-10-21 15:47:24,587 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-10-21 17:48:29] 2025-10-21 15:47:24,587 | INFO     | ..............................
[2025-10-21 17:48:29] 2025-10-21 15:47:24,587 | INFO     | . Timing measurements:
[2025-10-21 17:48:29] 2025-10-21 15:47:24,587 | INFO     | . get job = 0 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | . initial setup = 4 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | . payload setup = 131 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | . stage-in = 0 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | . payload execution = 14479 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | . stage-out = 6 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | . log creation = 0 s
[2025-10-21 17:48:29] 2025-10-21 15:47:24,588 | INFO     | ..............................
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | 
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | job summary report
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | --------------------------------------------------
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | PanDA job id: 6852942430
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | task id: 46771637
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | errors: (none)
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | pilot state: finished 
[2025-10-21 17:48:29] 2025-10-21 15:47:25,102 | INFO     | transexitcode: 0
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | exeerrorcode: 0
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | exeerrordiag: 
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | exitcode: 0
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | exitmsg: OK
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | cpuconsumptiontime: 54409 s
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | nevents: 400
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | neventsw: 0
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | pid: 22440
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | pgrp: 22440
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | corecount: 8
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | event service: False
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | sizes: {0: 2348761, 1: 2348960, 12: 2348960, 23: 2348988, 33: 2349016, 44: 2349072, 55: 2349228, 65: 2349256, 76: 2349284, 87: 2349340, 92: 2349630, 98: 2349938, 1
[2025-10-21 17:48:29] 2025-10-21 15:47:25,103 | INFO     | --------------------------------------------------
[2025-10-21 17:48:29] 2025-10-21 15:47:25,104 | INFO     | 
[2025-10-21 17:48:29] 2025-10-21 15:47:25,104 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-21 17:48:29] 2025-10-21 15:47:25,428 | INFO     | time since job start (14852s) is within the limit (172800.0s)
[2025-10-21 17:48:29] 2025-10-21 15:47:25,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 17:48:29] 2025-10-21 15:47:25,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 17:48:29] 2025-10-21 15:47:25,718 | INFO     | job 6852942430 has completed (purged errors)
[2025-10-21 17:48:29] 2025-10-21 15:47:25,718 | INFO     | overall cleanup function is called
[2025-10-21 17:48:29] 2025-10-21 15:47:26,577 | INFO     | PID=15923 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 17:48:29] 2025-10-21 15:47:26,577 | INFO     | .. there are 9 such processes running
[2025-10-21 17:48:29] 2025-10-21 15:47:26,727 | INFO     | --- collectZombieJob: --- 10, [22440]
[2025-10-21 17:48:29] 2025-10-21 15:47:26,728 | INFO     | zombie collector waiting for pid 22440
[2025-10-21 17:48:29] 2025-10-21 15:47:26,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 17:48:29] 2025-10-21 15:47:26,728 | INFO     | collected zombie processes
[2025-10-21 17:48:29] 2025-10-21 15:47:26,728 | INFO     | will attempt to kill all subprocesses of pid=22440
[2025-10-21 17:48:29] 2025-10-21 15:47:26,840 | INFO     | process IDs to be killed: [22440] (in reverse order)
[2025-10-21 17:48:29] 2025-10-21 15:47:27,314 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 17:48:29] 2025-10-21 15:47:27,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 17:48:29] 2025-10-21 15:47:27,317 | INFO     | did not find any defunct processes belonging to 22440
[2025-10-21 17:48:29] 2025-10-21 15:47:27,320 | INFO     | did not find any defunct processes belonging to 22440
[2025-10-21 17:48:29] 2025-10-21 15:47:27,321 | INFO     | ready for new job
[2025-10-21 17:48:29] 2025-10-21 15:47:27,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 17:48:29] 2025-10-21 15:47:27,323 | INFO     | ***************************************
[2025-10-21 17:48:29] 2025-10-21 15:47:27,323 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 17:48:29] 2025-10-21 15:47:27,323 | INFO     | ***************************************
[2025-10-21 17:48:29] 2025-10-21 15:47:27,323 | INFO     | 
[2025-10-21 17:48:29] 2025-10-21 15:47:27,324 | INFO     | pilot is running in a VM
[2025-10-21 17:48:29] 2025-10-21 15:47:27,324 | INFO     | architecture information:
[2025-10-21 17:48:29] 2025-10-21 15:47:27,333 | INFO     | executing command: cat /etc/os-release
[2025-10-21 17:48:29] 2025-10-21 15:47:27,577 | INFO     | cat /etc/os-release:
[2025-10-21 17:48:29] NAME="CentOS Linux"
[2025-10-21 17:48:29] VERSION="7 (Core)"
[2025-10-21 17:48:29] ID="centos"
[2025-10-21 17:48:29] ID_LIKE="rhel fedora"
[2025-10-21 17:48:29] VERSION_ID="7"
[2025-10-21 17:48:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 17:48:29] ANSI_COLOR="0;31"
[2025-10-21 17:48:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 17:48:29] HOME_URL="https://www.centos.org/"
[2025-10-21 17:48:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 17:48:29] 
[2025-10-21 17:48:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 17:48:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 17:48:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 17:48:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 17:48:29] 
[2025-10-21 17:48:29] 2025-10-21 15:47:27,577 | INFO     | ***************************************
[2025-10-21 17:48:29] 2025-10-21 15:47:28,081 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-21 17:48:29] 2025-10-21 15:47:28,274 | INFO     | sufficient remaining disk space (496113811456 B)
[2025-10-21 17:48:29] 2025-10-21 15:47:28,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 17:48:29] 2025-10-21 15:47:28,275 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 17:48:29] 2025-10-21 15:47:28,275 | INFO     | update_server=False
[2025-10-21 17:48:29] 2025-10-21 15:47:28,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 17:48:29] 2025-10-21 15:47:28,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 17:48:29] 2025-10-21 15:47:29,017 | INFO     | all payload control threads have been joined
[2025-10-21 17:48:29] 2025-10-21 15:47:29,055 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 17:48:29] 2025-10-21 15:47:29,056 | INFO     | aborting loop
[2025-10-21 17:48:29] 2025-10-21 15:47:29,074 | INFO     | all data control threads have been joined
[2025-10-21 17:48:29] 2025-10-21 15:47:29,281 | INFO     | [job] retrieve thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:29,292 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:29,299 | INFO     | all job control threads have been joined
[2025-10-21 17:48:29] 2025-10-21 15:47:29,305 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:29,388 | INFO     | [payload] validate_post thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:29,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 17:48:29] 2025-10-21 15:47:29,576 | INFO     | [job] validate thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:29,660 | INFO     | [data] copytool_in thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:29,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 17:48:29] 2025-10-21 15:47:30,023 | INFO     | [payload] control thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,061 | INFO     | [job] job monitor thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,078 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,081 | INFO     | [data] control thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,306 | INFO     | [job] control thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,553 | INFO     | [payload] failed_post thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,557 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:30,722 | INFO     | [job] queue monitor thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:31,563 | INFO     | [data] copytool_out thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:32,288 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 17:48:29] 2025-10-21 15:47:58,799 | INFO     | PID=15923 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 17:48:29] 2025-10-21 15:47:58,799 | INFO     | .. there are 9 such processes running
[2025-10-21 17:48:29] 2025-10-21 15:47:58,801 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 17:48:29] 2025-10-21 15:47:58,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 17:48:29] 2025-10-21 15:47:58,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 17:48:29] 2025-10-21 15:48:18,692 | INFO     | [monitor] cgroup control has ended
[2025-10-21 17:48:29] 2025-10-21 15:48:20,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705236961088)>', '<ExcThread(monitor, started 139704280282880)>']
[2025-10-21 17:48:29] 2025-10-21 15:48:20,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 17:48:29] 2025-10-21 15:48:20,933 | INFO     | [monitor] control thread has ended
[2025-10-21 17:48:29] 2025-10-21 15:48:25,394 | INFO     | all workflow threads have been joined
[2025-10-21 17:48:29] 2025-10-21 15:48:25,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 17:48:29] 2025-10-21 15:48:25,394 | INFO     | traces error code: 0
[2025-10-21 17:48:29] 2025-10-21 15:48:25,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 17:48:29] 2025-10-21 15:48:25,588 [wrapper] ==== pilot stdout END ====
[2025-10-21 17:48:29] 2025-10-21 15:48:25,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 17:48:29] 2025-10-21 15:48:25,607 [wrapper] pilotpid: 15923
[2025-10-21 17:48:29] 2025-10-21 15:48:25,673 [wrapper] Pilot exit status: 0
[2025-10-21 17:48:29] 2025-10-21 15:48:26,123 [wrapper] pandaids: 6852942430
[2025-10-21 17:48:29] 2025-10-21 15:48:26,863 [wrapper] cleanup supervisor_pilot 22278 15924
[2025-10-21 17:48:29] 2025-10-21 15:48:26,903 [wrapper] Test setup, not cleaning
[2025-10-21 17:48:29] 2025-10-21 15:48:26,967 [wrapper] apfmon messages muted
[2025-10-21 17:48:29] 2025-10-21 15:48:27,051 [wrapper] ==== wrapper stdout END ====
[2025-10-21 17:48:29] 2025-10-21 15:48:27,136 [wrapper] ==== wrapper stderr END ====
[2025-10-21 17:48:29]  *** Error codes and diagnostics ***
[2025-10-21 17:48:29]     "exeErrorCode": 0,
[2025-10-21 17:48:29]     "exeErrorDiag": "",
[2025-10-21 17:48:29]     "pilotErrorCode": 0,
[2025-10-21 17:48:29]     "pilotErrorDiag": "",
[2025-10-21 17:48:29]  *** Listing of results directory ***
[2025-10-21 17:48:29] total 429460
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc    557409 Oct 20 22:52 pilot3.tar.gz
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc      5112 Oct 20 23:28 queuedata.json
[2025-10-21 17:48:29] -rwx------. 1 boinc boinc     36292 Oct 20 23:31 runpilot2-wrapper.sh
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc       100 Oct 21 13:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 17:48:29] -rwxr-xr-x. 1 boinc boinc      7986 Oct 21 13:35 run_atlas
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc       105 Oct 21 13:35 job.xml
[2025-10-21 17:48:29] -rw-r--r--. 2 boinc boinc 226779192 Oct 21 13:35 EVNT.46771634._001011.pool.root.1
[2025-10-21 17:48:29] -rw-r--r--. 2 boinc boinc    569675 Oct 21 13:35 input.tar.gz
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc      6391 Oct 21 13:35 init_data.xml
[2025-10-21 17:48:29] -rw-r--r--. 2 boinc boinc     15120 Oct 21 13:35 start_atlas.sh
[2025-10-21 17:48:29] drwxrwx--x. 2 boinc boinc        68 Oct 21 13:35 shared
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc         0 Oct 21 13:35 boinc_lockfile
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc      2560 Oct 21 13:35 pandaJob.out
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc    978838 Oct 21 13:39 agis_schedconf.cvmfs.json
[2025-10-21 17:48:29] drwx------. 5 boinc boinc      4096 Oct 21 13:39 pilot3
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc 204195304 Oct 21 17:46 HITS.46771637._051650.pool.root.1
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc       531 Oct 21 17:46 boinc_task_state.xml
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc      1018 Oct 21 17:46 memory_monitor_summary.json
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc   1560740 Oct 21 17:46 agis_ddmendpoints.agis.ALL.json
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc    466963 Oct 21 17:46 log.46771637._051650.job.log.tgz.1
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc      7779 Oct 21 17:47 heartbeat.json
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc        95 Oct 21 17:47 pilot_heartbeat.json
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc      8192 Oct 21 17:48 boinc_mmap_file
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc        28 Oct 21 17:48 wrapper_checkpoint.txt
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc      4885 Oct 21 17:48 pilotlog.txt
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc   1982350 Oct 21 17:48 log.46771637._051650.job.log.1
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc       357 Oct 21 17:48 output.list
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc       620 Oct 21 17:48 runtime_log
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc   2467840 Oct 21 17:48 result.tar.gz
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc      8717 Oct 21 17:48 runtime_log.err
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc       656 Oct 21 17:48 rICODmleCV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhTzNDmzEvdfm.diag
[2025-10-21 17:48:29] -rw-r--r--. 1 boinc boinc     20775 Oct 21 17:48 stderr.txt
[2025-10-21 17:48:29] HITS file was successfully produced:
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc 204195304 Oct 21 17:46 shared/HITS.pool.root.1
[2025-10-21 17:48:29]  *** Contents of shared directory: ***
[2025-10-21 17:48:29] total 423868
[2025-10-21 17:48:29] -rw-r--r--. 2 boinc boinc 226779192 Oct 21 13:35 ATLAS.root_0
[2025-10-21 17:48:29] -rw-r--r--. 2 boinc boinc    569675 Oct 21 13:35 input.tar.gz
[2025-10-21 17:48:29] -rw-r--r--. 2 boinc boinc     15120 Oct 21 13:35 start_atlas.sh
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc 204195304 Oct 21 17:46 HITS.pool.root.1
[2025-10-21 17:48:29] -rw-------. 1 boinc boinc   2467840 Oct 21 17:48 result.tar.gz
17:48:31 (12127): run_atlas exited; CPU time 54587.122238
17:48:31 (12127): called boinc_finish(0)

</stderr_txt>
]]>

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