Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:31:13 (2200410): wrapper (7.7.26015): starting
02:31:13 (2200410): wrapper: running run_atlas (--nthreads 4)
[2025-10-21 02:31:13] Arguments: --nthreads 4
[2025-10-21 02:31:13] Threads: 4
[2025-10-21 02:31:13] Checking for CVMFS
[2025-10-21 02:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 02:31:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 02:31:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 02:31:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 02:31:13] 2.9.2.0 2150638 140 57284 151940 3 57 23623508 36864001 0 130560 0 130901 99.986 6692 3802 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 02:31:13] CVMFS is ok
[2025-10-21 02:31:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 02:31:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 02:31:13] Further information can be found at the LHC@home message board.
[2025-10-21 02:31:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 02:31:13] Checking for apptainer binary...
[2025-10-21 02:31:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 02:31:13] Running /usr/bin/apptainer --version
[2025-10-21 02:31:13] apptainer version 1.4.1-1.1
[2025-10-21 02:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 02:31:13] thA315b
[2025-10-21 02:31:13] apptainer works
[2025-10-21 02:31:13] Set ATHENA_PROC_NUMBER=4
[2025-10-21 02:31:13] Set ATHENA_CORE_NUMBER=4
[2025-10-21 02:31:13] Starting ATLAS job with PandaID=6852945283
[2025-10-21 02:31:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 03:40:29]  *** The last 200 lines of the pilot log: ***
[2025-10-21 03:40:29] 2025-10-21 01:39:55,924 | INFO     | zombie collector waiting for pid 2210753
[2025-10-21 03:40:29] 2025-10-21 01:39:55,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 03:40:29] 2025-10-21 01:39:55,924 | INFO     | collected zombie processes
[2025-10-21 03:40:29] 2025-10-21 01:39:55,924 | INFO     | will attempt to kill all subprocesses of pid=2210753
[2025-10-21 03:40:29] 2025-10-21 01:39:55,968 | INFO     | process IDs to be killed: [2210753] (in reverse order)
[2025-10-21 03:40:29] 2025-10-21 01:39:55,995 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 03:40:29] 2025-10-21 01:39:55,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 03:40:29] 2025-10-21 01:39:55,996 | INFO     | did not find any defunct processes belonging to 2210753
[2025-10-21 03:40:29] 2025-10-21 01:39:55,997 | INFO     | did not find any defunct processes belonging to 2210753
[2025-10-21 03:40:29] 2025-10-21 01:39:55,997 | INFO     | ready for new job
[2025-10-21 03:40:29] 2025-10-21 01:39:55,997 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 03:40:29] 2025-10-21 01:39:55,998 | INFO     | ***************************************
[2025-10-21 03:40:29] 2025-10-21 01:39:55,998 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 03:40:29] 2025-10-21 01:39:55,998 | INFO     | ***************************************
[2025-10-21 03:40:29] 2025-10-21 01:39:55,998 | INFO     | 
[2025-10-21 03:40:29] 2025-10-21 01:39:55,999 | INFO     | architecture information:
[2025-10-21 03:40:29] 2025-10-21 01:39:55,999 | INFO     | executing command: cat /etc/os-release
[2025-10-21 03:40:29] 2025-10-21 01:39:56,008 | INFO     | cat /etc/os-release:
[2025-10-21 03:40:29] NAME="CentOS Linux"
[2025-10-21 03:40:29] VERSION="7 (Core)"
[2025-10-21 03:40:29] ID="centos"
[2025-10-21 03:40:29] ID_LIKE="rhel fedora"
[2025-10-21 03:40:29] VERSION_ID="7"
[2025-10-21 03:40:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 03:40:29] ANSI_COLOR="0;31"
[2025-10-21 03:40:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 03:40:29] HOME_URL="https://www.centos.org/"
[2025-10-21 03:40:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 03:40:29] 
[2025-10-21 03:40:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 03:40:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 03:40:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 03:40:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 03:40:29] 
[2025-10-21 03:40:29] 2025-10-21 01:39:56,008 | INFO     | ***************************************
[2025-10-21 03:40:29] 2025-10-21 01:39:56,511 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-21 03:40:29] 2025-10-21 01:39:56,525 | INFO     | sufficient remaining disk space (336925294592 B)
[2025-10-21 03:40:29] 2025-10-21 01:39:56,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 03:40:29] 2025-10-21 01:39:56,525 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 03:40:29] 2025-10-21 01:39:56,525 | INFO     | update_server=False
[2025-10-21 03:40:29] 2025-10-21 01:39:56,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 03:40:29] 2025-10-21 01:39:56,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 03:40:29] 2025-10-21 01:39:56,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 03:40:29] 2025-10-21 01:39:56,526 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 03:40:29] 2025-10-21 01:39:56,526 | INFO     | aborting loop
[2025-10-21 03:40:29] 2025-10-21 01:39:56,679 | INFO     | all payload control threads have been joined
[2025-10-21 03:40:29] 2025-10-21 01:39:56,782 | INFO     | all job control threads have been joined
[2025-10-21 03:40:29] 2025-10-21 01:39:57,083 | INFO     | all data control threads have been joined
[2025-10-21 03:40:29] 2025-10-21 01:39:57,531 | INFO     | [job] retrieve thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:57,531 | INFO     | [job] queue monitor thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:57,532 | INFO     | [job] job monitor thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:57,685 | INFO     | [payload] control thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:57,788 | INFO     | [job] control thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:57,925 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:57,981 | INFO     | [data] copytool_in thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,089 | INFO     | [data] control thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,183 | INFO     | [job] validate thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,290 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,290 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,532 | INFO     | [data] copytool_out thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,657 | INFO     | [payload] validate_post thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:58,947 | INFO     | [payload] failed_post thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:39:59,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 03:40:29] 2025-10-21 01:40:03,159 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 03:40:29] 2025-10-21 01:40:24,612 | INFO     | [monitor] cgroup control has ended
[2025-10-21 03:40:29] 2025-10-21 01:40:24,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414951163712)>', '<ExcThread(monitor, started 140414577252096)>']
[2025-10-21 03:40:29] 2025-10-21 01:40:27,191 | INFO     | PID=2204198 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 03:40:29] 2025-10-21 01:40:27,191 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 03:40:29] 2025-10-21 01:40:27,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 03:40:29] 2025-10-21 01:40:27,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 03:40:29] 2025-10-21 01:40:27,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 03:40:29] 2025-10-21 01:40:27,191 | INFO     | [monitor] control thread has ended
[2025-10-21 03:40:29] 2025-10-21 01:40:29,646 | INFO     | all workflow threads have been joined
[2025-10-21 03:40:29] 2025-10-21 01:40:29,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 03:40:29] 2025-10-21 01:40:29,647 | INFO     | traces error code: 0
[2025-10-21 03:40:29] 2025-10-21 01:40:29,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 03:40:29] 2025-10-21 01:40:29,700 [wrapper] ==== pilot stdout END ====
[2025-10-21 03:40:29] 2025-10-21 01:40:29,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 03:40:29] 2025-10-21 01:40:29,706 [wrapper] pilotpid: 2204198
[2025-10-21 03:40:29] 2025-10-21 01:40:29,709 [wrapper] Pilot exit status: 0
[2025-10-21 03:40:29] 2025-10-21 01:40:29,717 [wrapper] pandaids: 6852945283
[2025-10-21 03:40:29] 2025-10-21 01:40:29,735 [wrapper] cleanup supervisor_pilot 2220550 2204199
[2025-10-21 03:40:29] 2025-10-21 01:40:29,738 [wrapper] Test setup, not cleaning
[2025-10-21 03:40:29] 2025-10-21 01:40:29,741 [wrapper] apfmon messages muted
[2025-10-21 03:40:29] 2025-10-21 01:40:29,743 [wrapper] ==== wrapper stdout END ====
[2025-10-21 03:40:29] 2025-10-21 01:40:29,745 [wrapper] ==== wrapper stderr END ====
[2025-10-21 03:40:29]  *** Error codes and diagnostics ***
[2025-10-21 03:40:29]     "exeErrorCode": 0,
[2025-10-21 03:40:29]     "exeErrorDiag": "",
[2025-10-21 03:40:29]     "pilotErrorCode": 0,
[2025-10-21 03:40:29]     "pilotErrorDiag": "",
[2025-10-21 03:40:29]  *** Listing of results directory ***
[2025-10-21 03:40:29] total 429756
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc    557409 Oct 20 22:52 pilot3.tar.gz
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc      5112 Oct 20 23:47 queuedata.json
[2025-10-21 03:40:29] -rwx------ 1 boinc boinc     36292 Oct 20 23:48 runpilot2-wrapper.sh
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc       100 Oct 21 02:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 03:40:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 02:31 run_atlas
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc       105 Oct 21 02:31 job.xml
[2025-10-21 03:40:29] -rw-r--r-- 2 boinc boinc 228507718 Oct 21 02:31 EVNT.46771634._002085.pool.root.1
[2025-10-21 03:40:29] drwxrwx--x 2 boinc boinc      4096 Oct 21 02:31 shared
[2025-10-21 03:40:29] -rw-r--r-- 2 boinc boinc    569675 Oct 21 02:31 input.tar.gz
[2025-10-21 03:40:29] -rw-r--r-- 2 boinc boinc     15120 Oct 21 02:31 start_atlas.sh
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc         0 Oct 21 02:31 boinc_setup_complete
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc      6443 Oct 21 02:31 init_data.xml
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc         0 Oct 21 02:31 boinc_lockfile
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc      2560 Oct 21 02:31 pandaJob.out
[2025-10-21 03:40:29] -rw------- 1 boinc boinc    978838 Oct 21 02:31 agis_schedconf.cvmfs.json
[2025-10-21 03:40:29] -rw------- 1 boinc boinc   1560740 Oct 21 02:31 agis_ddmendpoints.agis.ALL.json
[2025-10-21 03:40:29] drwx------ 5 boinc boinc      4096 Oct 21 02:31 pilot3
[2025-10-21 03:40:29] -rw------- 1 boinc boinc 205904579 Oct 21 03:39 HITS.46771637._052625.pool.root.1
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc       530 Oct 21 03:39 boinc_task_state.xml
[2025-10-21 03:40:29] -rw------- 1 boinc boinc        95 Oct 21 03:39 pilot_heartbeat.json
[2025-10-21 03:40:29] -rw------- 1 boinc boinc      1032 Oct 21 03:39 memory_monitor_summary.json
[2025-10-21 03:40:29] -rw------- 1 boinc boinc    262368 Oct 21 03:39 log.46771637._052625.job.log.tgz.1
[2025-10-21 03:40:29] -rw------- 1 boinc boinc      7754 Oct 21 03:39 heartbeat.json
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc        27 Oct 21 03:40 wrapper_checkpoint.txt
[2025-10-21 03:40:29] -rw------- 1 boinc boinc      4752 Oct 21 03:40 pilotlog.txt
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc      8192 Oct 21 03:40 boinc_mmap_file
[2025-10-21 03:40:29] -rw------- 1 boinc boinc    614486 Oct 21 03:40 log.46771637._052625.job.log.1
[2025-10-21 03:40:29] -rw------- 1 boinc boinc       357 Oct 21 03:40 output.list
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc       620 Oct 21 03:40 runtime_log
[2025-10-21 03:40:29] -rw------- 1 boinc boinc    901120 Oct 21 03:40 result.tar.gz
[2025-10-21 03:40:29] -rw------- 1 boinc boinc       659 Oct 21 03:40 OGuLDmTvCV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjxdMDmtv1jQm.diag
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc      8782 Oct 21 03:40 runtime_log.err
[2025-10-21 03:40:29] -rw-r--r-- 1 boinc boinc     10512 Oct 21 03:40 stderr.txt
[2025-10-21 03:40:29] HITS file was successfully produced:
[2025-10-21 03:40:29] -rw------- 1 boinc boinc 205904579 Oct 21 03:39 shared/HITS.pool.root.1
[2025-10-21 03:40:29]  *** Contents of shared directory: ***
[2025-10-21 03:40:29] total 425700
[2025-10-21 03:40:29] -rw-r--r-- 2 boinc boinc 228507718 Oct 21 02:31 ATLAS.root_0
[2025-10-21 03:40:29] -rw-r--r-- 2 boinc boinc    569675 Oct 21 02:31 input.tar.gz
[2025-10-21 03:40:29] -rw-r--r-- 2 boinc boinc     15120 Oct 21 02:31 start_atlas.sh
[2025-10-21 03:40:29] -rw------- 1 boinc boinc 205904579 Oct 21 03:39 HITS.pool.root.1
[2025-10-21 03:40:29] -rw------- 1 boinc boinc    901120 Oct 21 03:40 result.tar.gz
03:40:51 (2200410): run_atlas exited; CPU time 15499.065473
03:40:51 (2200410): called boinc_finish(0)

</stderr_txt>
]]>

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