Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-20 20:26:55 (8364): vboxwrapper version 26210
2025-10-20 20:26:55 (8364): BOINC client version: 8.2.4
2025-10-20 20:26:56 (8364): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-10-20 20:26:56 (8364): Successfully copied 'init_data.xml' to the shared directory.
2025-10-20 20:26:56 (8364): Create VM. (boinc_5c19a2d4cd9f3533, slot#1)
2025-10-20 20:26:57 (8364): Setting Memory Size for VM. (4400MB)
2025-10-20 20:26:57 (8364): Setting CPU Count for VM. (4)
2025-10-20 20:26:57 (8364): Setting Chipset Options for VM.
2025-10-20 20:26:58 (8364): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-20 20:26:58 (8364): Setting Boot Options for VM.
2025-10-20 20:26:58 (8364): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-20 20:26:59 (8364): Enabling VM Network Access.
2025-10-20 20:26:59 (8364): Disabling USB Support for VM.
2025-10-20 20:26:59 (8364): Disabling COM Port Support for VM.
2025-10-20 20:26:59 (8364): Disabling LPT Port Support for VM.
2025-10-20 20:27:00 (8364): Disabling Audio Support for VM.
2025-10-20 20:27:00 (8364): Disabling Clipboard Support for VM.
2025-10-20 20:27:00 (8364): Disabling Drag and Drop Support for VM.
2025-10-20 20:27:00 (8364): Adding storage controller(s) to VM.
2025-10-20 20:27:01 (8364): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-20 20:27:03 (8364): Adding VirtualBox Guest Additions to VM.
2025-10-20 20:27:03 (8364): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-20 20:27:03 (8364): forwarding host port 53539 to guest port 80
2025-10-20 20:27:04 (8364): Enabling remote desktop for VM.
2025-10-20 20:27:04 (8364): Required extension pack not installed, remote desktop not enabled.
2025-10-20 20:27:04 (8364): Enabling shared directory for VM.
2025-10-20 20:27:04 (8364): Starting VM using VBoxManage interface. (boinc_5c19a2d4cd9f3533, slot#1)
2025-10-20 20:27:11 (8364): Successfully started VM. (PID = '3728')
2025-10-20 20:27:11 (8364): Reporting VM Process ID to BOINC.
2025-10-20 20:27:11 (8364): Guest Log: BIOS: VirtualBox 7.1.0
2025-10-20 20:27:11 (8364): Guest Log: CPUID EDX: 0x178bfbff
2025-10-20 20:27:11 (8364): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-20 20:27:11 (8364): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-20 20:27:11 (8364): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-20 20:27:11 (8364): Detected: Web Application Enabled (http://localhost:53539)
2025-10-20 20:27:11 (8364): Preference change detected
2025-10-20 20:27:11 (8364): Setting CPU throttle for VM. (90%)
2025-10-20 20:27:11 (8364): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-20 20:27:13 (8364): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-20 20:27:13 (8364): Guest Log: BIOS: Booting from Hard Disk...
2025-10-20 20:27:16 (8364): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-20 20:27:16 (8364): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-20 20:27:16 (8364): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-20 20:27:24 (8364): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-20 20:27:24 (8364): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-20 20:27:31 (8364): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000188 main     Log opened 2025-10-20T20:27:29.006548000Z
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000328 main     OS Product: Linux
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000376 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000511 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000598 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000600 main     Process ID: 1279
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.000601 main     Package type: LINUX_64BITS_GENERIC
2025-10-20 20:27:31 (8364): Guest Log: 00:00:00.001694 main     5.2.32 r132073 started. Verbose level = 0
2025-10-20 20:27:31 (8364): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-20 20:27:31 (8364): Guest Log: [INFO] Mounting shared directory
2025-10-20 20:27:31 (8364): Guest Log: [INFO] Checking for init_data.xml
2025-10-20 20:27:41 (8364): Guest Log: 00:00:10.004734 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 829 157 000ns (GuestNow=1 761 006 460 839 096 000 ns GuestLast=1 760 992 049 009 939 000 ns fSetTimeLastLoop=true )
2025-10-20 20:29:07 (8364): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-20 20:29:07 (8364): Guest Log: [INFO] Detected branch: prod
2025-10-20 20:29:08 (8364): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-20 20:29:08 (8364): Guest Log: Copying input files
2025-10-20 20:29:10 (8364): Guest Log: Copied input files into RunAtlas.
2025-10-20 20:29:10 (8364): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-20 20:29:10 (8364): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-20 20:29:10 (8364): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-20 20:29:10 (8364): Guest Log: Further information can be found at the LHC@home message board.
2025-10-20 20:29:26 (8364): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-20 20:29:27 (8364): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-20 20:29:27 (8364): Guest Log: 2.6.3.0 1598 0 32076 151940 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-20 20:29:28 (8364): Guest Log: copied the webapp to /var/www
2025-10-20 20:29:28 (8364): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-20 20:29:28 (8364): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-20 20:29:30 (8364): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-20 20:29:30 (8364): Guest Log:  *** Starting ATLAS job. (PandaID=6852940932 taskID=46771637) ***
2025-10-20 20:41:26 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:41:47 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 20:47:47 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:48:07 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 20:48:17 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:48:37 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 20:50:17 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:50:37 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 20:50:48 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:51:08 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 20:51:18 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:51:38 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 20:54:48 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 20:55:08 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 21:00:48 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 21:01:08 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 21:02:18 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 21:02:38 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 21:02:48 (8364): VM state change detected. (old = 'running', new = 'paused')
2025-10-20 21:03:08 (8364): VM state change detected. (old = 'paused', new = 'running')
2025-10-20 21:07:28 (8364): Guest Log:  *** Job finished ***
2025-10-20 21:07:28 (8364): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:03,695 | INFO     | all workflow threads have been joined
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:03,695 | INFO     | end of generic workflow (traces error code: 0)
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:03,695 | INFO     | traces error code: 0
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:03,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,824 | INFO     | PID=6114 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,825 | INFO     | found 0 job(s) in 20 queues
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,826 | INFO     | [monitor] control thread has ended
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:10,994 [wrapper] ==== pilot stdout END ====
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,001 [wrapper] ==== wrapper stdout RESUME ====
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,008 [wrapper] pilotpid: 6114
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,015 [wrapper] Pilot exit status: 0
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,877 [wrapper] pandaids: 6852940932
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,917 [wrapper] cleanup supervisor_pilot 28838 6115
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,925 [wrapper] Test setup, not cleaning
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,932 [wrapper] apfmon messages muted
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,939 [wrapper] ==== wrapper stdout END ====
2025-10-20 21:07:28 (8364): Guest Log: 2025-10-21 01:04:11,946 [wrapper] ==== wrapper stderr END ====
2025-10-20 21:07:28 (8364): Guest Log:  *** Error codes and diagnostics ***
2025-10-20 21:07:28 (8364): Guest Log:     "exeErrorCode": 65,
2025-10-20 21:07:28 (8364): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-10-20 21:07:28 (8364): Guest Log:     "pilotErrorCode": 1305,
2025-10-20 21:07:28 (8364): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-10-20 21:07:28 (8364): Guest Log:  *** Listing of results directory ***
2025-10-20 21:07:28 (8364): Guest Log: total 4792
2025-10-20 21:07:28 (8364): Guest Log: -rw-r--r--. 1 atlas atlas  557409 Oct 20 20:52 pilot3.tar.gz
2025-10-20 21:07:28 (8364): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Oct 20 21:28 queuedata.json
2025-10-20 21:07:28 (8364): Guest Log: -rwx------. 1 atlas atlas   36292 Oct 20 21:31 runpilot2-wrapper.sh
2025-10-20 21:07:28 (8364): Guest Log: -rwxr-xr-x. 1 atlas atlas    6498 Oct 21 00:29 init_data.xml
2025-10-20 21:07:28 (8364): Guest Log: -rwxr-xr-x. 1 atlas atlas  569690 Oct 21 00:29 input.tar.gz
2025-10-20 21:07:28 (8364): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Oct 21 00:29 start_atlas.sh
2025-10-20 21:07:28 (8364): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 21 00:29 EVNT.46771634._002045.pool.root.1 -> /data/./ATLAS.root_0
2025-10-20 21:07:28 (8364): Guest Log: -rw-r--r--. 1 atlas atlas    2561 Oct 21 00:29 pandaJob.out
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas  978838 Oct 21 00:40 agis_schedconf.cvmfs.json
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas 1560740 Oct 21 00:40 agis_ddmendpoints.agis.ALL.json
2025-10-20 21:07:28 (8364): Guest Log: drwx------. 5 atlas atlas    4096 Oct 21 00:40 pilot3
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas   71844 Oct 21 01:01 log.46771637._051054.job.log.tgz.1
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas      95 Oct 21 01:03 pilot_heartbeat.json
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas    8126 Oct 21 01:03 heartbeat.json
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas     744 Oct 21 01:04 pilotlog.txt
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas  469309 Oct 21 01:04 log.46771637._051054.job.log.1
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas     188 Oct 21 01:04 output.list
2025-10-20 21:07:28 (8364): Guest Log: -rw-r--r--. 1 atlas atlas     620 Oct 21 01:04 runtime_log
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas  563200 Oct 21 01:04 result.tar.gz
2025-10-20 21:07:28 (8364): Guest Log: -rw-------. 1 atlas atlas     648 Oct 21 01:04 TkSNDmleCV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5SzNDmohieGo.diag
2025-10-20 21:07:28 (8364): Guest Log: -rw-r--r--. 1 atlas atlas    8483 Oct 21 01:04 runtime_log.err
2025-10-20 21:07:28 (8364): Guest Log: Looking for outputfile HITS.46771637._051054.pool.root.1
2025-10-20 21:07:28 (8364): Guest Log: No HITS file was produced
2025-10-20 21:07:28 (8364): Guest Log: Successfully finished the ATLAS job!
2025-10-20 21:07:28 (8364): Guest Log: Copying the results back to the shared directory!
2025-10-20 21:07:28 (8364): Guest Log:  *** Contents of shared directory: ***
2025-10-20 21:07:28 (8364): Guest Log: total 222916
2025-10-20 21:07:28 (8364): Guest Log: -rwxrwxrwx. 1 root root 227100141 Oct 21 00:26 ATLAS.root_0
2025-10-20 21:07:28 (8364): Guest Log: -rwxrwxrwx. 1 root root      6498 Oct 21 00:26 init_data.xml
2025-10-20 21:07:28 (8364): Guest Log: -rwxrwxrwx. 1 root root    569690 Oct 20 22:15 input.tar.gz
2025-10-20 21:07:28 (8364): Guest Log: -rwxrwxrwx. 1 root root    563200 Oct 21  2025 result.tar.gz
2025-10-20 21:07:28 (8364): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 20 22:15 start_atlas.sh
2025-10-20 21:07:28 (8364): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-20 21:07:28 (8364): VM Completion File Detected.
2025-10-20 21:07:28 (8364): Powering off VM.
2025-10-20 21:07:30 (8364): Successfully stopped VM.
2025-10-20 21:07:30 (8364): Deregistering VM. (boinc_5c19a2d4cd9f3533, slot#1)
2025-10-20 21:07:30 (8364): Removing network bandwidth throttle group from VM.
2025-10-20 21:07:30 (8364): Removing VM from VirtualBox.
2025-10-20 21:07:35 (8364): called boinc_finish(0)

</stderr_txt>
]]>

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