Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:23:02 (1260326): wrapper (7.7.26015): starting
12:23:02 (1260326): wrapper: running run_atlas (--nthreads 9)
[2025-10-20 12:23:02] Arguments: --nthreads 9
[2025-10-20 12:23:02] Threads: 9
[2025-10-20 12:23:02] Checking for CVMFS
[2025-10-20 12:23:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-20 12:23:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-20 12:23:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-20 12:23:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-20 12:23:02] 2.13.2.0 3310087 30427 218408 151929 0 171 30716182 40960000 13087 16776704 0 69586752 99.785 39155019 40713 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-20 12:23:02] CVMFS is ok
[2025-10-20 12:23:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-20 12:23:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-20 12:23:02] Further information can be found at the LHC@home message board.
[2025-10-20 12:23:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 12:23:02] Checking for apptainer binary...
[2025-10-20 12:23:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-20 12:23:02] Running /usr/bin/apptainer --version
[2025-10-20 12:23:02] apptainer version 1.4.3-1.el9
[2025-10-20 12:23:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 12:23:02] c-206-38.aglt2.org
[2025-10-20 12:23:02] apptainer works
[2025-10-20 12:23:02] Set ATHENA_PROC_NUMBER=9
[2025-10-20 12:23:02] Set ATHENA_CORE_NUMBER=9
[2025-10-20 12:23:02] Starting ATLAS job with PandaID=6840223416
[2025-10-20 12:23:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 13:51:29]  *** The last 200 lines of the pilot log: ***
[2025-10-20 13:51:29] 2025-10-20 17:50:30,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-20 13:51:29] 2025-10-20 17:50:31,059 | WARNING  | process 1271336 can no longer be monitored (due to stat problems) - aborting
[2025-10-20 13:51:29] 2025-10-20 17:50:31,060 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840223416/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,061 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840223416/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,061 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-20 13:51:29] 2025-10-20 17:50:31,061 | WARNING  | maxPSS not found in memory monitor output
[2025-10-20 13:51:29] 2025-10-20 17:50:31,061 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3085881 B
[2025-10-20 13:51:29] 2025-10-20 17:50:31,061 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16119 B
[2025-10-20 13:51:29] 2025-10-20 17:50:31,062 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-20 13:51:29] 2025-10-20 17:50:31,080 | INFO     | sufficient remaining disk space (86482354176 B)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,080 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,081 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840223416: 3389534 B (within 2537553920 B limit)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,081 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840223416/HITS.46676269._081525.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,081 | INFO     | total size of present files: 0 B (workdir size: 3389534 B)
[2025-10-20 13:51:29] 2025-10-20 17:50:31,081 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840223416/HITS.46676269._081525.pool.root.1 since it does not exist
[2025-10-20 13:51:29] 2025-10-20 17:50:31,367 | INFO     | number of running child processes to parent process 1271336: 1
[2025-10-20 13:51:29] 2025-10-20 17:50:31,367 | INFO     | maximum number of monitored processes: 6
[2025-10-20 13:51:29] 2025-10-20 17:50:31,948 | INFO     | time since job start (5237s) is within the limit (172800.0s)
[2025-10-20 13:51:29] 2025-10-20 17:50:32,954 | INFO     | job 6840223416 has state=finished
[2025-10-20 13:51:29] 2025-10-20 17:50:32,954 | INFO     | preparing for final server update for job 6840223416 in state='finished'
[2025-10-20 13:51:29] 2025-10-20 17:50:32,955 | INFO     | this job has now completed (state=finished)
[2025-10-20 13:51:29] 2025-10-20 17:50:32,955 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-20 13:51:29] 2025-10-20 17:50:32,955 | INFO     | log transfer has been attempted: DONE
[2025-10-20 13:51:29] 2025-10-20 17:50:32,955 | INFO     | job 6840223416 has finished - writing final server update
[2025-10-20 13:51:29] 2025-10-20 17:50:32,955 | INFO     | total number of processed events: 400 (read)
[2025-10-20 13:51:29] 2025-10-20 17:50:32,956 | INFO     | executing command: lscpu
[2025-10-20 13:51:29] 2025-10-20 17:50:32,994 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-20 13:51:29] 2025-10-20 17:50:33,870 | INFO     | monitor loop #387: job 0:6840223416 is in state 'finished'
[2025-10-20 13:51:29] 2025-10-20 17:50:33,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 13:51:29] 2025-10-20 17:50:33,954 | INFO     | time since job start (5239s) is within the limit (172800.0s)
[2025-10-20 13:51:29] 2025-10-20 17:50:35,960 | INFO     | time since job start (5241s) is within the limit (172800.0s)
[2025-10-20 13:51:29] 2025-10-20 17:50:36,373 | INFO     | monitor loop #388: job 0:6840223416 is in state 'finished'
[2025-10-20 13:51:29] 2025-10-20 17:50:36,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 13:51:29] 2025-10-20 17:50:36,958 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-20 13:51:29] 2025-10-20 17:50:36,962 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.2322968750004
[2025-10-20 13:51:29] 2025-10-20 17:50:36,973 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840223416/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 13:51:29] 2025-10-20 17:50:36,974 | INFO     | extracted standard info from prmon json
[2025-10-20 13:51:29] 2025-10-20 17:50:36,974 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 13:51:29] 2025-10-20 17:50:36,974 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 13:51:29] 2025-10-20 17:50:36,975 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 13:51:29] 2025-10-20 17:50:36,975 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 13:51:29] 2025-10-20 17:50:36,977 | INFO     | fitting pss+swap vs Time
[2025-10-20 13:51:29] 2025-10-20 17:50:36,977 | INFO     | sum of square deviations: 152858680.0
[2025-10-20 13:51:29] 2025-10-20 17:50:36,977 | INFO     | sum of deviations: -18246736203.000004
[2025-10-20 13:51:29] 2025-10-20 17:50:36,977 | INFO     | mean x: 1760980104.0
[2025-10-20 13:51:29] 2025-10-20 17:50:36,977 | INFO     | mean y: 2824625.240506329
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | -- intersect: 210210968620.8547
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | intersect: 210210968620.8547
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | chi2: 0.1365585478887577
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | -- intersect: 210210968620.8547
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | current memory leak: -119.37 B/s (using 79 data points, chi2=0.14)
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | could have reported an average CPU frequency of 3280 MHz (6 samples)
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | ..............................
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | . Timing measurements:
[2025-10-20 13:51:29] 2025-10-20 17:50:36,978 | INFO     | . get job = 0 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | . initial setup = 2 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | . payload setup = 5 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | . stage-in = 0 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | . payload execution = 5208 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | . stage-out = 0 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | . log creation = 0 s
[2025-10-20 13:51:29] 2025-10-20 17:50:36,979 | INFO     | ..............................
[2025-10-20 13:51:29] 2025-10-20 17:50:37,052 | INFO     | 
[2025-10-20 13:51:29] 2025-10-20 17:50:37,052 | INFO     | job summary report
[2025-10-20 13:51:29] 2025-10-20 17:50:37,052 | INFO     | --------------------------------------------------
[2025-10-20 13:51:29] 2025-10-20 17:50:37,052 | INFO     | PanDA job id: 6840223416
[2025-10-20 13:51:29] 2025-10-20 17:50:37,052 | INFO     | task id: 46676269
[2025-10-20 13:51:29] 2025-10-20 17:50:37,052 | INFO     | errors: (none)
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | pilot state: finished 
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | transexitcode: 0
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | exeerrorcode: 0
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | exeerrordiag: 
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | exitcode: 0
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | exitmsg: OK
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | cpuconsumptiontime: 32671 s
[2025-10-20 13:51:29] 2025-10-20 17:50:37,053 | INFO     | nevents: 400
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | neventsw: 0
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | pid: 1271336
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | pgrp: 1271336
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | corecount: 9
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | event service: False
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | sizes: {0: 2348642, 1: 2348897, 5: 2349159, 12: 2349215, 5217: 2375717, 5218: 2384715, 5221: 2384899, 5227: 2385121}
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | --------------------------------------------------
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | 
[2025-10-20 13:51:29] 2025-10-20 17:50:37,054 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-20 13:51:29] 2025-10-20 17:50:37,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,080 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | job 6840223416 has completed (purged errors)
[2025-10-20 13:51:29] 2025-10-20 17:50:37,082 | INFO     | overall cleanup function is called
[2025-10-20 13:51:29] 2025-10-20 17:50:37,393 | INFO     | PID=1264414 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-20 13:51:29] 2025-10-20 17:50:37,393 | INFO     | .. there are 14 such processes running
[2025-10-20 13:51:29] 2025-10-20 17:50:38,086 | INFO     | --- collectZombieJob: --- 10, [1271336]
[2025-10-20 13:51:29] 2025-10-20 17:50:38,086 | INFO     | zombie collector waiting for pid 1271336
[2025-10-20 13:51:29] 2025-10-20 17:50:38,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 13:51:29] 2025-10-20 17:50:38,086 | INFO     | collected zombie processes
[2025-10-20 13:51:29] 2025-10-20 17:50:38,086 | INFO     | will attempt to kill all subprocesses of pid=1271336
[2025-10-20 13:51:29] 2025-10-20 17:50:38,376 | INFO     | process IDs to be killed: [1271336] (in reverse order)
[2025-10-20 13:51:29] 2025-10-20 17:50:38,471 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 13:51:29] 2025-10-20 17:50:38,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 13:51:29] 2025-10-20 17:50:38,483 | INFO     | did not find any defunct processes belonging to 1271336
[2025-10-20 13:51:29] 2025-10-20 17:50:38,492 | INFO     | did not find any defunct processes belonging to 1271336
[2025-10-20 13:51:29] 2025-10-20 17:50:38,492 | INFO     | ready for new job
[2025-10-20 13:51:29] 2025-10-20 17:50:38,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 13:51:29] 2025-10-20 17:50:38,493 | INFO     | ***************************************
[2025-10-20 13:51:29] 2025-10-20 17:50:38,493 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 13:51:29] 2025-10-20 17:50:38,494 | INFO     | ***************************************
[2025-10-20 13:51:29] 2025-10-20 17:50:38,494 | INFO     | 
[2025-10-20 13:51:29] 2025-10-20 17:50:38,497 | INFO     | architecture information:
[2025-10-20 13:51:29] 2025-10-20 17:50:38,497 | INFO     | executing command: cat /etc/os-release
[2025-10-20 13:51:29] 2025-10-20 17:50:38,511 | INFO     | cat /etc/os-release:
[2025-10-20 13:51:29] NAME="CentOS Linux"
[2025-10-20 13:51:29] VERSION="7 (Core)"
[2025-10-20 13:51:29] ID="centos"
[2025-10-20 13:51:29] ID_LIKE="rhel fedora"
[2025-10-20 13:51:29] VERSION_ID="7"
[2025-10-20 13:51:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 13:51:29] ANSI_COLOR="0;31"
[2025-10-20 13:51:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 13:51:29] HOME_URL="https://www.centos.org/"
[2025-10-20 13:51:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 13:51:29] 
[2025-10-20 13:51:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 13:51:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 13:51:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 13:51:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 13:51:29] 
[2025-10-20 13:51:29] 2025-10-20 17:50:38,511 | INFO     | ***************************************
[2025-10-20 13:51:29] 2025-10-20 17:50:39,013 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-20 13:51:29] 2025-10-20 17:50:39,033 | INFO     | sufficient remaining disk space (86486548480 B)
[2025-10-20 13:51:29] 2025-10-20 17:50:39,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 13:51:29] 2025-10-20 17:50:39,033 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 13:51:29] 2025-10-20 17:50:39,033 | INFO     | update_server=False
[2025-10-20 13:51:29] 2025-10-20 17:50:39,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 13:51:29] 2025-10-20 17:50:39,034 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 13:51:29] 2025-10-20 17:50:39,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 13:51:29] 2025-10-20 17:50:39,500 | INFO     | all data control threads have been joined
[2025-10-20 13:51:29] 2025-10-20 17:50:39,799 | INFO     | all job control threads have been joined
[2025-10-20 13:51:29] 2025-10-20 17:50:39,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 13:51:29] 2025-10-20 17:50:39,883 | INFO     | aborting loop
[2025-10-20 13:51:29] 2025-10-20 17:50:40,038 | INFO     | [job] retrieve thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,039 | INFO     | [job] queue monitor thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,142 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,199 | INFO     | all payload control threads have been joined
[2025-10-20 13:51:29] 2025-10-20 17:50:40,331 | INFO     | [job] validate thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,505 | INFO     | [data] control thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,732 | INFO     | [data] copytool_in thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,804 | INFO     | [job] control thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:40,890 | INFO     | [job] job monitor thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:41,034 | INFO     | [payload] validate_post thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:41,040 | INFO     | [data] copytool_out thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:41,110 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:41,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 13:51:29] 2025-10-20 17:50:41,205 | INFO     | [payload] control thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:41,314 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:41,391 | INFO     | [payload] failed_post thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:45,172 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:50:49,805 | INFO     | job.realtimelogging is not enabled
[2025-10-20 13:51:29] 2025-10-20 17:50:50,810 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 13:51:29] 2025-10-20 17:51:09,812 | INFO     | PID=1264414 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-20 13:51:29] 2025-10-20 17:51:09,813 | INFO     | .. there are 14 such processes running
[2025-10-20 13:51:29] 2025-10-20 17:51:09,813 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 13:51:29] 2025-10-20 17:51:09,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 13:51:29] 2025-10-20 17:51:09,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 13:51:29] 2025-10-20 17:51:22,462 | INFO     | [monitor] cgroup control has ended
[2025-10-20 13:51:29] 2025-10-20 17:51:24,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065881499456)>', '<ExcThread(monitor, started 140065250469632)>']
[2025-10-20 13:51:29] 2025-10-20 17:51:24,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 13:51:29] 2025-10-20 17:51:24,874 | INFO     | [monitor] control thread has ended
[2025-10-20 13:51:29] 2025-10-20 17:51:29,319 | INFO     | all workflow threads have been joined
[2025-10-20 13:51:29] 2025-10-20 17:51:29,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 13:51:29] 2025-10-20 17:51:29,319 | INFO     | traces error code: 0
[2025-10-20 13:51:29] 2025-10-20 17:51:29,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 13:51:29] 2025-10-20 17:51:29,453 [wrapper] ==== pilot stdout END ====
[2025-10-20 13:51:29] 2025-10-20 17:51:29,458 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 13:51:29] 2025-10-20 17:51:29,464 [wrapper] pilotpid: 1264414
[2025-10-20 13:51:29] 2025-10-20 17:51:29,467 [wrapper] Pilot exit status: 0
[2025-10-20 13:51:29] 2025-10-20 17:51:29,484 [wrapper] pandaids: 6840223416
[2025-10-20 13:51:29] 2025-10-20 17:51:29,561 [wrapper] cleanup supervisor_pilot 1445460 1264415
[2025-10-20 13:51:29] 2025-10-20 17:51:29,565 [wrapper] Test setup, not cleaning
[2025-10-20 13:51:29] 2025-10-20 17:51:29,568 [wrapper] apfmon messages muted
[2025-10-20 13:51:29] 2025-10-20 17:51:29,571 [wrapper] ==== wrapper stdout END ====
[2025-10-20 13:51:29] 2025-10-20 17:51:29,574 [wrapper] ==== wrapper stderr END ====
[2025-10-20 13:51:29]  *** Error codes and diagnostics ***
[2025-10-20 13:51:29]     "exeErrorCode": 0,
[2025-10-20 13:51:29]     "exeErrorDiag": "",
[2025-10-20 13:51:29]     "pilotErrorCode": 0,
[2025-10-20 13:51:29]     "pilotErrorDiag": "",
[2025-10-20 13:51:29]  *** Listing of results directory ***
[2025-10-20 13:51:29] total 410144
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-20 13:51:29] -rwx------. 1 boincer umatlas     36292 Oct 12 11:02 runpilot2-wrapper.sh
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:02 queuedata.json
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas       100 Oct 20 12:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 13:51:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 20 12:23 run_atlas
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas       105 Oct 20 12:23 job.xml
[2025-10-20 13:51:29] -rw-r--r--. 2 boincer umatlas 220633610 Oct 20 12:23 EVNT.46676267._001839.pool.root.1
[2025-10-20 13:51:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 20 12:23 shared
[2025-10-20 13:51:29] -rw-r--r--. 2 boincer umatlas    569676 Oct 20 12:23 input.tar.gz
[2025-10-20 13:51:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 20 12:23 start_atlas.sh
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas         0 Oct 20 12:23 boinc_lockfile
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas      2549 Oct 20 12:23 pandaJob.out
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas    978846 Oct 20 12:23 agis_schedconf.cvmfs.json
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas   1560740 Oct 20 12:23 agis_ddmendpoints.agis.ALL.json
[2025-10-20 13:51:29] drwx------. 5 boincer umatlas      4096 Oct 20 12:23 pilot3
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas      6899 Oct 20 13:45 init_data.xml
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas       529 Oct 20 13:49 boinc_task_state.xml
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas 193239441 Oct 20 13:49 HITS.46676269._081525.pool.root.1
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas      1034 Oct 20 13:50 memory_monitor_summary.json
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas    339363 Oct 20 13:50 log.46676269._081525.job.log.tgz.1
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas      7784 Oct 20 13:50 heartbeat.json
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas        95 Oct 20 13:51 pilot_heartbeat.json
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 20 13:51 boinc_mmap_file
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas        27 Oct 20 13:51 wrapper_checkpoint.txt
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas      4896 Oct 20 13:51 pilotlog.txt
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas    768688 Oct 20 13:51 log.46676269._081525.job.log.1
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas       357 Oct 20 13:51 output.list
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas       620 Oct 20 13:51 runtime_log
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas   1126400 Oct 20 13:51 result.tar.gz
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas       653 Oct 20 13:51 zwnLDmSlCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWMkNDmqQ0nRn.diag
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas      8703 Oct 20 13:51 runtime_log.err
[2025-10-20 13:51:29] -rw-r--r--. 1 boincer umatlas     22511 Oct 20 13:51 stderr.txt
[2025-10-20 13:51:29] HITS file was successfully produced:
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas 193239441 Oct 20 13:49 shared/HITS.pool.root.1
[2025-10-20 13:51:29]  *** Contents of shared directory: ***
[2025-10-20 13:51:29] total 405856
[2025-10-20 13:51:29] -rw-r--r--. 2 boincer umatlas 220633610 Oct 20 12:23 ATLAS.root_0
[2025-10-20 13:51:29] -rw-r--r--. 2 boincer umatlas    569676 Oct 20 12:23 input.tar.gz
[2025-10-20 13:51:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 20 12:23 start_atlas.sh
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas 193239441 Oct 20 13:49 HITS.pool.root.1
[2025-10-20 13:51:29] -rw-------. 1 boincer umatlas   1126400 Oct 20 13:51 result.tar.gz
13:51:31 (1260326): run_atlas exited; CPU time 32681.033642
13:51:31 (1260326): called boinc_finish(0)

</stderr_txt>
]]>

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