Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:22:45 (23837): wrapper (7.7.26015): starting
06:22:45 (23837): wrapper: running run_atlas (--nthreads 8)
[2025-10-20 06:22:45] Arguments: --nthreads 8
[2025-10-20 06:22:45] Threads: 8
[2025-10-20 06:22:45] Checking for CVMFS
[2025-10-20 06:22:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-20 06:22:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-20 06:22:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-20 06:22:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-20 06:22:46] 2.11.2.0 2864 25743 83344 151920 0 1 11005814 20275200 1 130560 0 15119320 99.989 861063 40306 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-20 06:22:46] CVMFS is ok
[2025-10-20 06:22:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-20 06:22:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-20 06:22:46] Further information can be found at the LHC@home message board.
[2025-10-20 06:22:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 06:22:46] Checking for apptainer binary...
[2025-10-20 06:22:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-20 06:22:46] Running /usr/bin/apptainer --version
[2025-10-20 06:22:46] apptainer version 1.3.2-1.el7
[2025-10-20 06:22:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 06:22:47] c-115-17.aglt2.org
[2025-10-20 06:22:47] apptainer works
[2025-10-20 06:22:47] Set ATHENA_PROC_NUMBER=8
[2025-10-20 06:22:47] Set ATHENA_CORE_NUMBER=8
[2025-10-20 06:22:48] Starting ATLAS job with PandaID=6852454192
[2025-10-20 06:22:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 07:53:19]  *** The last 200 lines of the pilot log: ***
[2025-10-20 07:53:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-20 07:53:19]  replicas=None
[2025-10-20 07:53:19]  scope=mc23_13p6TeV
[2025-10-20 07:53:19]  status=None
[2025-10-20 07:53:19]  status_code=0
[2025-10-20 07:53:19]  storage_token=
[2025-10-20 07:53:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6852454192/log.46808902._006351.job.log.tgz.1
[2025-10-20 07:53:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/2c/log.46808902._006351.job.log.tgz.1
[2025-10-20 07:53:19]  workdir=None
[2025-10-20 07:53:19] ]
[2025-10-20 07:53:19] 2025-10-20 11:52:35,081 | INFO     | transferring file log.46808902._006351.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6852454192/log.46808902._006351.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-20 07:53:19] 2025-10-20 11:52:35,082 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6852454192/log.46808902._006351.job.log.tgz.1 /tmp/boinchome/slots/0/log.46808902._006351.job
[2025-10-20 07:53:19] 2025-10-20 11:52:35,109 | INFO     | adding to output.list: log.46808902._006351.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/2c/log.46808902._006351.job.log.tg
[2025-10-20 07:53:19] 2025-10-20 11:52:35,111 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-20 07:53:19] 2025-10-20 11:52:35,111 | INFO     | summary of transferred files:
[2025-10-20 07:53:19] 2025-10-20 11:52:35,111 | INFO     |  -- lfn=log.46808902._006351.job.log.tgz.1, status_code=0, status=transferred
[2025-10-20 07:53:19] 2025-10-20 11:52:35,111 | INFO     | stage-out finished correctly
[2025-10-20 07:53:19] 2025-10-20 11:52:35,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-20 07:53:19] 2025-10-20 11:52:35,308 | INFO     | job 6852454192 has state=finished
[2025-10-20 07:53:19] 2025-10-20 11:52:35,309 | INFO     | preparing for final server update for job 6852454192 in state='finished'
[2025-10-20 07:53:19] 2025-10-20 11:52:35,309 | INFO     | this job has now completed (state=finished)
[2025-10-20 07:53:19] 2025-10-20 11:52:35,310 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-20 07:53:19] 2025-10-20 11:52:35,310 | INFO     | log transfer has been attempted: DONE
[2025-10-20 07:53:19] 2025-10-20 11:52:35,310 | INFO     | job 6852454192 has finished - writing final server update
[2025-10-20 07:53:19] 2025-10-20 11:52:35,310 | INFO     | total number of processed events: 400 (read)
[2025-10-20 07:53:19] 2025-10-20 11:52:35,312 | INFO     | executing command: lscpu
[2025-10-20 07:53:19] 2025-10-20 11:52:35,340 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-20 07:53:19] 2025-10-20 11:52:36,082 | INFO     | time since job start (5371s) is within the limit (172800.0s)
[2025-10-20 07:53:19] 2025-10-20 11:52:38,088 | INFO     | time since job start (5373s) is within the limit (172800.0s)
[2025-10-20 07:53:19] 2025-10-20 11:52:39,161 | WARNING  | process 1584 can no longer be monitored (due to stat problems) - aborting
[2025-10-20 07:53:19] 2025-10-20 11:52:39,161 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6852454192/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 07:53:19] 2025-10-20 11:52:39,246 | INFO     | number of running child processes to parent process 1584: 1
[2025-10-20 07:53:19] 2025-10-20 11:52:39,246 | INFO     | maximum number of monitored processes: 6
[2025-10-20 07:53:19] 2025-10-20 11:52:40,093 | INFO     | time since job start (5375s) is within the limit (172800.0s)
[2025-10-20 07:53:19] 2025-10-20 11:52:40,911 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-20 07:53:19] 2025-10-20 11:52:40,914 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1762.375
[2025-10-20 07:53:19] 2025-10-20 11:52:40,916 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6852454192/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 07:53:19] 2025-10-20 11:52:40,916 | INFO     | extracted standard info from prmon json
[2025-10-20 07:53:19] 2025-10-20 11:52:40,917 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 07:53:19] 2025-10-20 11:52:40,917 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 07:53:19] 2025-10-20 11:52:40,917 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 07:53:19] 2025-10-20 11:52:40,917 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 07:53:19] 2025-10-20 11:52:40,919 | INFO     | fitting pss+swap vs Time
[2025-10-20 07:53:19] 2025-10-20 11:52:40,920 | INFO     | sum of square deviations: 164765880.0
[2025-10-20 07:53:19] 2025-10-20 11:52:40,920 | INFO     | sum of deviations: -7383312327.0
[2025-10-20 07:53:19] 2025-10-20 11:52:40,920 | INFO     | mean x: 1760958562.0
[2025-10-20 07:53:19] 2025-10-20 11:52:40,920 | INFO     | mean y: 2737342.4691358022
[2025-10-20 07:53:19] 2025-10-20 11:52:40,920 | INFO     | -- intersect: 78912928324.67245
[2025-10-20 07:53:19] 2025-10-20 11:52:40,920 | INFO     | intersect: 78912928324.67245
[2025-10-20 07:53:19] 2025-10-20 11:52:40,921 | INFO     | chi2: 0.09062331929558258
[2025-10-20 07:53:19] 2025-10-20 11:52:40,921 | INFO     | -- intersect: 78912928324.67245
[2025-10-20 07:53:19] 2025-10-20 11:52:40,921 | INFO     | current memory leak: -44.81 B/s (using 81 data points, chi2=0.09)
[2025-10-20 07:53:19] 2025-10-20 11:52:40,921 | INFO     | could have reported an average CPU frequency of 2025 MHz (6 samples)
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | ..............................
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . Timing measurements:
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . get job = 0 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . initial setup = 2 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . payload setup = 8 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . stage-in = 0 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . payload execution = 5339 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,922 | INFO     | . stage-out = 0 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,923 | INFO     | . log creation = 0 s
[2025-10-20 07:53:19] 2025-10-20 11:52:40,923 | INFO     | ..............................
[2025-10-20 07:53:19] 2025-10-20 11:52:41,200 | INFO     | PID=27633 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-20 07:53:19] 2025-10-20 11:52:41,367 | INFO     | 
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | job summary report
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | --------------------------------------------------
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | PanDA job id: 6852454192
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | task id: 46808902
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | errors: (none)
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | pilot state: finished 
[2025-10-20 07:53:19] 2025-10-20 11:52:41,368 | INFO     | transexitcode: 0
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | exeerrorcode: 0
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | exeerrordiag: 
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | exitcode: 0
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | exitmsg: OK
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | cpuconsumptiontime: 39701 s
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | nevents: 400
[2025-10-20 07:53:19] 2025-10-20 11:52:41,369 | INFO     | neventsw: 0
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | pid: 1584
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | pgrp: 1584
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | corecount: 8
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | event service: False
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | sizes: {0: 2348681, 1: 2348880, 7: 2349142, 11: 2349170, 5351: 2375637, 5352: 2384819, 5358: 2384957}
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | --------------------------------------------------
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | 
[2025-10-20 07:53:19] 2025-10-20 11:52:41,370 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-20 07:53:19] 2025-10-20 11:52:41,398 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,399 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,399 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,400 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,400 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,403 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 07:53:19] 2025-10-20 11:52:41,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,403 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 07:53:19] 2025-10-20 11:52:41,404 | INFO     | job 6852454192 has completed (purged errors)
[2025-10-20 07:53:19] 2025-10-20 11:52:41,404 | INFO     | overall cleanup function is called
[2025-10-20 07:53:19] 2025-10-20 11:52:42,411 | INFO     | --- collectZombieJob: --- 10, [1584]
[2025-10-20 07:53:19] 2025-10-20 11:52:42,412 | INFO     | zombie collector waiting for pid 1584
[2025-10-20 07:53:19] 2025-10-20 11:52:42,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 07:53:19] 2025-10-20 11:52:42,412 | INFO     | collected zombie processes
[2025-10-20 07:53:19] 2025-10-20 11:52:42,412 | INFO     | will attempt to kill all subprocesses of pid=1584
[2025-10-20 07:53:19] 2025-10-20 11:52:42,496 | INFO     | process IDs to be killed: [1584] (in reverse order)
[2025-10-20 07:53:19] 2025-10-20 11:52:42,551 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 07:53:19] 2025-10-20 11:52:42,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 07:53:19] 2025-10-20 11:52:42,557 | INFO     | did not find any defunct processes belonging to 1584
[2025-10-20 07:53:19] 2025-10-20 11:52:42,561 | INFO     | did not find any defunct processes belonging to 1584
[2025-10-20 07:53:19] 2025-10-20 11:52:42,562 | INFO     | ready for new job
[2025-10-20 07:53:19] 2025-10-20 11:52:42,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 07:53:19] 2025-10-20 11:52:42,564 | INFO     | ***************************************
[2025-10-20 07:53:19] 2025-10-20 11:52:42,564 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 07:53:19] 2025-10-20 11:52:42,564 | INFO     | ***************************************
[2025-10-20 07:53:19] 2025-10-20 11:52:42,565 | INFO     | 
[2025-10-20 07:53:19] 2025-10-20 11:52:42,565 | INFO     | architecture information:
[2025-10-20 07:53:19] 2025-10-20 11:52:42,566 | INFO     | executing command: cat /etc/os-release
[2025-10-20 07:53:19] 2025-10-20 11:52:42,585 | INFO     | cat /etc/os-release:
[2025-10-20 07:53:19] NAME="CentOS Linux"
[2025-10-20 07:53:19] VERSION="7 (Core)"
[2025-10-20 07:53:19] ID="centos"
[2025-10-20 07:53:19] ID_LIKE="rhel fedora"
[2025-10-20 07:53:19] VERSION_ID="7"
[2025-10-20 07:53:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 07:53:19] ANSI_COLOR="0;31"
[2025-10-20 07:53:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 07:53:19] HOME_URL="https://www.centos.org/"
[2025-10-20 07:53:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 07:53:19] 
[2025-10-20 07:53:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 07:53:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 07:53:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 07:53:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 07:53:19] 
[2025-10-20 07:53:19] 2025-10-20 11:52:42,585 | INFO     | ***************************************
[2025-10-20 07:53:19] 2025-10-20 11:52:43,088 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-20 07:53:19] 2025-10-20 11:52:43,111 | INFO     | sufficient remaining disk space (18688770048 B)
[2025-10-20 07:53:19] 2025-10-20 11:52:43,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 07:53:19] 2025-10-20 11:52:43,112 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 07:53:19] 2025-10-20 11:52:43,112 | INFO     | update_server=False
[2025-10-20 07:53:19] 2025-10-20 11:52:43,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 07:53:19] 2025-10-20 11:52:43,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 07:53:19] 2025-10-20 11:52:43,113 | INFO     | aborting loop
[2025-10-20 07:53:19] 2025-10-20 11:52:43,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 07:53:19] 2025-10-20 11:52:43,968 | INFO     | all data control threads have been joined
[2025-10-20 07:53:19] 2025-10-20 11:52:43,980 | INFO     | all job control threads have been joined
[2025-10-20 07:53:19] 2025-10-20 11:52:44,118 | INFO     | [job] retrieve thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:44,119 | INFO     | [job] job monitor thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:44,287 | INFO     | [data] copytool_in thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:44,357 | INFO     | all payload control threads have been joined
[2025-10-20 07:53:19] 2025-10-20 11:52:44,479 | INFO     | [payload] validate_post thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:44,726 | INFO     | [payload] failed_post thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:44,974 | INFO     | [data] control thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:44,986 | INFO     | [job] control thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,214 | INFO     | [data] copytool_out thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,360 | INFO     | [payload] control thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,380 | INFO     | [job] validate thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,418 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,435 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:45,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 07:53:19] 2025-10-20 11:52:46,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 07:53:19] 2025-10-20 11:52:47,026 | INFO     | [job] queue monitor thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:49,824 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:52:53,816 | INFO     | job.realtimelogging is not enabled
[2025-10-20 07:53:19] 2025-10-20 11:52:54,819 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 07:53:19] 2025-10-20 11:53:03,199 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-20 07:53:19] 2025-10-20 11:53:13,405 | INFO     | PID=27633 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-20 07:53:19] 2025-10-20 11:53:13,405 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 07:53:19] 2025-10-20 11:53:13,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 07:53:19] 2025-10-20 11:53:13,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 07:53:19] 2025-10-20 11:53:13,899 | INFO     | [monitor] cgroup control has ended
[2025-10-20 07:53:19] 2025-10-20 11:53:14,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140690518353728)>', '<ExcThread(monitor, started 140690075924224)>']
[2025-10-20 07:53:19] 2025-10-20 11:53:14,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 07:53:19] 2025-10-20 11:53:14,410 | INFO     | [monitor] control thread has ended
[2025-10-20 07:53:19] 2025-10-20 11:53:19,317 | INFO     | all workflow threads have been joined
[2025-10-20 07:53:19] 2025-10-20 11:53:19,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 07:53:19] 2025-10-20 11:53:19,324 | INFO     | traces error code: 0
[2025-10-20 07:53:19] 2025-10-20 11:53:19,325 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 07:53:19] 2025-10-20 11:53:19,426 [wrapper] ==== pilot stdout END ====
[2025-10-20 07:53:19] 2025-10-20 11:53:19,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 07:53:19] 2025-10-20 11:53:19,435 [wrapper] pilotpid: 27633
[2025-10-20 07:53:19] 2025-10-20 11:53:19,439 [wrapper] Pilot exit status: 0
[2025-10-20 07:53:19] 2025-10-20 11:53:19,458 [wrapper] pandaids: 6852454192
[2025-10-20 07:53:19] 2025-10-20 11:53:19,502 [wrapper] cleanup supervisor_pilot 25601 27634
[2025-10-20 07:53:19] 2025-10-20 11:53:19,507 [wrapper] Test setup, not cleaning
[2025-10-20 07:53:19] 2025-10-20 11:53:19,511 [wrapper] apfmon messages muted
[2025-10-20 07:53:19] 2025-10-20 11:53:19,516 [wrapper] ==== wrapper stdout END ====
[2025-10-20 07:53:19] 2025-10-20 11:53:19,521 [wrapper] ==== wrapper stderr END ====
[2025-10-20 07:53:19]  *** Error codes and diagnostics ***
[2025-10-20 07:53:19]     "exeErrorCode": 0,
[2025-10-20 07:53:19]     "exeErrorDiag": "",
[2025-10-20 07:53:19]     "pilotErrorCode": 0,
[2025-10-20 07:53:19]     "pilotErrorDiag": "",
[2025-10-20 07:53:19]  *** Listing of results directory ***
[2025-10-20 07:53:19] total 341740
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas    557409 Oct 20 06:17 pilot3.tar.gz
[2025-10-20 07:53:19] -rwx------ 1 boincer umatlas     36292 Oct 20 06:20 runpilot2-wrapper.sh
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas      5112 Oct 20 06:21 queuedata.json
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas       100 Oct 20 06:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 07:53:19] -rwxr-xr-x 1 boincer umatlas      7986 Oct 20 06:22 run_atlas
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas       105 Oct 20 06:22 job.xml
[2025-10-20 07:53:19] -rw-r--r-- 2 boincer umatlas 190422905 Oct 20 06:22 EVNT.46808900._000250.pool.root.1
[2025-10-20 07:53:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 20 06:22 start_atlas.sh
[2025-10-20 07:53:19] drwxrwx--x 2 boincer umatlas      4096 Oct 20 06:22 shared
[2025-10-20 07:53:19] -rw-r--r-- 2 boincer umatlas    569672 Oct 20 06:22 input.tar.gz
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas         0 Oct 20 06:22 boinc_lockfile
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas      2506 Oct 20 06:22 pandaJob.out
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas    976379 Oct 20 06:23 agis_schedconf.cvmfs.json
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas   1560740 Oct 20 06:23 agis_ddmendpoints.agis.ALL.json
[2025-10-20 07:53:19] drwx------ 5 boincer umatlas      4096 Oct 20 06:23 pilot3
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas      5909 Oct 20 07:48 init_data.xml
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas 153404374 Oct 20 07:52 HITS.46808902._006351.pool.root.1
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas       530 Oct 20 07:52 boinc_task_state.xml
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas        95 Oct 20 07:52 pilot_heartbeat.json
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas      1046 Oct 20 07:52 memory_monitor_summary.json
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas    339041 Oct 20 07:52 log.46808902._006351.job.log.tgz.1
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas      7834 Oct 20 07:52 heartbeat.json
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas      8192 Oct 20 07:53 boinc_mmap_file
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas        27 Oct 20 07:53 wrapper_checkpoint.txt
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas      4818 Oct 20 07:53 pilotlog.txt
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas    768781 Oct 20 07:53 log.46808902._006351.job.log.1
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas       357 Oct 20 07:53 output.list
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas       620 Oct 20 07:53 runtime_log
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas   1126400 Oct 20 07:53 result.tar.gz
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas      8703 Oct 20 07:53 runtime_log.err
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas       658 Oct 20 07:53 0VCNDmdB2U8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzxyNDmtrbF8n.diag
[2025-10-20 07:53:19] -rw-r--r-- 1 boincer umatlas     21879 Oct 20 07:53 stderr.txt
[2025-10-20 07:53:19] HITS file was successfully produced:
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas 153404374 Oct 20 07:52 shared/HITS.pool.root.1
[2025-10-20 07:53:19]  *** Contents of shared directory: ***
[2025-10-20 07:53:19] total 337452
[2025-10-20 07:53:19] -rw-r--r-- 2 boincer umatlas 190422905 Oct 20 06:22 ATLAS.root_0
[2025-10-20 07:53:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 20 06:22 start_atlas.sh
[2025-10-20 07:53:19] -rw-r--r-- 2 boincer umatlas    569672 Oct 20 06:22 input.tar.gz
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas 153404374 Oct 20 07:52 HITS.pool.root.1
[2025-10-20 07:53:19] -rw------- 1 boincer umatlas   1126400 Oct 20 07:53 result.tar.gz
07:53:20 (23837): run_atlas exited; CPU time 39706.710798
07:53:20 (23837): called boinc_finish(0)

</stderr_txt>
]]>

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