Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:41 (368339): wrapper (7.7.26015): starting
07:28:41 (368339): wrapper: running run_atlas (--nthreads 8)
[2025-10-20 07:28:41] Arguments: --nthreads 8
[2025-10-20 07:28:41] Threads: 8
[2025-10-20 07:28:41] Checking for CVMFS
[2025-10-20 07:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-20 07:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-20 07:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-20 07:28:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-20 07:28:43] 2.13.2.0 3310087 30133 250344 151920 2 843 27606139 40960000 17032 16776704 0 67297544 99.784 38197167 40854 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-20 07:28:43] CVMFS is ok
[2025-10-20 07:28:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-20 07:28:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-20 07:28:43] Further information can be found at the LHC@home message board.
[2025-10-20 07:28:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 07:28:43] Checking for apptainer binary...
[2025-10-20 07:28:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-20 07:28:43] Running /usr/bin/apptainer --version
[2025-10-20 07:28:43] apptainer version 1.4.3-1.el9
[2025-10-20 07:28:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 07:28:43] c-206-38.aglt2.org
[2025-10-20 07:28:43] apptainer works
[2025-10-20 07:28:44] Set ATHENA_PROC_NUMBER=8
[2025-10-20 07:28:44] Set ATHENA_CORE_NUMBER=8
[2025-10-20 07:28:44] Starting ATLAS job with PandaID=6852454453
[2025-10-20 07:28:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 08:50:37]  *** The last 200 lines of the pilot log: ***
[2025-10-20 08:50:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-20 08:50:37]  replicas=None
[2025-10-20 08:50:37]  scope=mc23_13p6TeV
[2025-10-20 08:50:37]  status=None
[2025-10-20 08:50:37]  status_code=0
[2025-10-20 08:50:37]  storage_token=
[2025-10-20 08:50:37]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6852454453/log.46808902._006548.job.log.tgz.1
[2025-10-20 08:50:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/92/log.46808902._006548.job.log.tgz.1
[2025-10-20 08:50:37]  workdir=None
[2025-10-20 08:50:37] ]
[2025-10-20 08:50:37] 2025-10-20 12:49:58,662 | INFO     | transferring file log.46808902._006548.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6852454453/log.46808902._006548.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-20 08:50:37] 2025-10-20 12:49:58,662 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6852454453/log.46808902._006548.job.log.tgz.1 /tmp/boinchome/slots/3/log.46808902._006548.job
[2025-10-20 08:50:37] 2025-10-20 12:49:58,688 | INFO     | adding to output.list: log.46808902._006548.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/92/log.46808902._006548.job.log.tg
[2025-10-20 08:50:37] 2025-10-20 12:49:58,689 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-20 08:50:37] 2025-10-20 12:49:58,689 | INFO     | summary of transferred files:
[2025-10-20 08:50:37] 2025-10-20 12:49:58,689 | INFO     |  -- lfn=log.46808902._006548.job.log.tgz.1, status_code=0, status=transferred
[2025-10-20 08:50:37] 2025-10-20 12:49:58,690 | INFO     | stage-out finished correctly
[2025-10-20 08:50:37] 2025-10-20 12:49:58,983 | INFO     | PID=372428 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-20 08:50:37] 2025-10-20 12:49:58,983 | INFO     | .. there are 13 such processes running
[2025-10-20 08:50:37] 2025-10-20 12:49:59,144 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-20 08:50:37] 2025-10-20 12:49:59,983 | INFO     | time since job start (4844s) is within the limit (172800.0s)
[2025-10-20 08:50:37] 2025-10-20 12:50:00,880 | INFO     | monitor loop #347: job 0:6852454453 is in state 'finished'
[2025-10-20 08:50:37] 2025-10-20 12:50:00,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 08:50:37] 2025-10-20 12:50:01,377 | INFO     | job 6852454453 has state=finished
[2025-10-20 08:50:37] 2025-10-20 12:50:01,377 | INFO     | preparing for final server update for job 6852454453 in state='finished'
[2025-10-20 08:50:37] 2025-10-20 12:50:01,378 | INFO     | this job has now completed (state=finished)
[2025-10-20 08:50:37] 2025-10-20 12:50:01,378 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-20 08:50:37] 2025-10-20 12:50:01,378 | INFO     | log transfer has been attempted: DONE
[2025-10-20 08:50:37] 2025-10-20 12:50:01,378 | INFO     | job 6852454453 has finished - writing final server update
[2025-10-20 08:50:37] 2025-10-20 12:50:01,378 | INFO     | total number of processed events: 400 (read)
[2025-10-20 08:50:37] 2025-10-20 12:50:01,389 | INFO     | executing command: lscpu
[2025-10-20 08:50:37] 2025-10-20 12:50:01,447 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-20 08:50:37] 2025-10-20 12:50:01,988 | INFO     | time since job start (4846s) is within the limit (172800.0s)
[2025-10-20 08:50:37] 2025-10-20 12:50:03,385 | INFO     | monitor loop #348: job 0:6852454453 is in state 'finished'
[2025-10-20 08:50:37] 2025-10-20 12:50:03,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 08:50:37] 2025-10-20 12:50:03,994 | INFO     | time since job start (4848s) is within the limit (172800.0s)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,191 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-20 08:50:37] 2025-10-20 12:50:05,195 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3280.3949062500005
[2025-10-20 08:50:37] 2025-10-20 12:50:05,202 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6852454453/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,202 | INFO     | extracted standard info from prmon json
[2025-10-20 08:50:37] 2025-10-20 12:50:05,202 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 08:50:37] 2025-10-20 12:50:05,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 08:50:37] 2025-10-20 12:50:05,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 08:50:37] 2025-10-20 12:50:05,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | fitting pss+swap vs Time
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | sum of square deviations: 115651525.94444431
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | sum of deviations: 1548915857.0
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | mean x: 1760962294.0277777
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | mean y: 2489306.5
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | -- intersect: -23582002108.762207
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | intersect: -23582002108.762207
[2025-10-20 08:50:37] 2025-10-20 12:50:05,204 | INFO     | chi2: 0.0018134670697014903
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | -- intersect: -23582002108.762207
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | current memory leak: 13.39 B/s (using 72 data points, chi2=0.00)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | could have reported an average CPU frequency of 3257 MHz (6 samples)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | ..............................
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . Timing measurements:
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . get job = 0 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . initial setup = 3 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . payload setup = 18 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . stage-in = 0 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . payload execution = 4781 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . stage-out = 1 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | . log creation = 0 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,205 | INFO     | ..............................
[2025-10-20 08:50:37] 2025-10-20 12:50:05,259 | INFO     | 
[2025-10-20 08:50:37] 2025-10-20 12:50:05,259 | INFO     | job summary report
[2025-10-20 08:50:37] 2025-10-20 12:50:05,259 | INFO     | --------------------------------------------------
[2025-10-20 08:50:37] 2025-10-20 12:50:05,259 | INFO     | PanDA job id: 6852454453
[2025-10-20 08:50:37] 2025-10-20 12:50:05,259 | INFO     | task id: 46808902
[2025-10-20 08:50:37] 2025-10-20 12:50:05,259 | INFO     | errors: (none)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | pilot state: finished 
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | transexitcode: 0
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | exeerrorcode: 0
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | exeerrordiag: 
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | exitcode: 0
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | exitmsg: OK
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | cpuconsumptiontime: 26437 s
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | nevents: 400
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | neventsw: 0
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | pid: 380820
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | pgrp: 380820
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | corecount: 8
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | event service: False
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | sizes: {0: 2348852, 11: 2348852, 15: 2349142, 22: 2349170, 4804: 2375458, 4807: 2384640, 4813: 2384778}
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | --------------------------------------------------
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | 
[2025-10-20 08:50:37] 2025-10-20 12:50:05,260 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-20 08:50:37] 2025-10-20 12:50:05,273 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,275 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 08:50:37] 2025-10-20 12:50:05,275 | INFO     | job 6852454453 has completed (purged errors)
[2025-10-20 08:50:37] 2025-10-20 12:50:05,275 | INFO     | overall cleanup function is called
[2025-10-20 08:50:37] 2025-10-20 12:50:06,282 | INFO     | --- collectZombieJob: --- 10, [380820]
[2025-10-20 08:50:37] 2025-10-20 12:50:06,282 | INFO     | zombie collector waiting for pid 380820
[2025-10-20 08:50:37] 2025-10-20 12:50:06,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 08:50:37] 2025-10-20 12:50:06,282 | INFO     | collected zombie processes
[2025-10-20 08:50:37] 2025-10-20 12:50:06,282 | INFO     | will attempt to kill all subprocesses of pid=380820
[2025-10-20 08:50:37] 2025-10-20 12:50:06,483 | INFO     | process IDs to be killed: [380820] (in reverse order)
[2025-10-20 08:50:37] 2025-10-20 12:50:06,565 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 08:50:37] 2025-10-20 12:50:06,566 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 08:50:37] 2025-10-20 12:50:06,576 | INFO     | did not find any defunct processes belonging to 380820
[2025-10-20 08:50:37] 2025-10-20 12:50:06,587 | INFO     | did not find any defunct processes belonging to 380820
[2025-10-20 08:50:37] 2025-10-20 12:50:06,587 | INFO     | ready for new job
[2025-10-20 08:50:37] 2025-10-20 12:50:06,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 08:50:37] 2025-10-20 12:50:06,589 | INFO     | ***************************************
[2025-10-20 08:50:37] 2025-10-20 12:50:06,589 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 08:50:37] 2025-10-20 12:50:06,589 | INFO     | ***************************************
[2025-10-20 08:50:37] 2025-10-20 12:50:06,589 | INFO     | 
[2025-10-20 08:50:37] 2025-10-20 12:50:06,593 | INFO     | architecture information:
[2025-10-20 08:50:37] 2025-10-20 12:50:06,593 | INFO     | executing command: cat /etc/os-release
[2025-10-20 08:50:37] 2025-10-20 12:50:06,606 | INFO     | cat /etc/os-release:
[2025-10-20 08:50:37] NAME="CentOS Linux"
[2025-10-20 08:50:37] VERSION="7 (Core)"
[2025-10-20 08:50:37] ID="centos"
[2025-10-20 08:50:37] ID_LIKE="rhel fedora"
[2025-10-20 08:50:37] VERSION_ID="7"
[2025-10-20 08:50:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 08:50:37] ANSI_COLOR="0;31"
[2025-10-20 08:50:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 08:50:37] HOME_URL="https://www.centos.org/"
[2025-10-20 08:50:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 08:50:37] 
[2025-10-20 08:50:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 08:50:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 08:50:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 08:50:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 08:50:37] 
[2025-10-20 08:50:37] 2025-10-20 12:50:06,606 | INFO     | ***************************************
[2025-10-20 08:50:37] 2025-10-20 12:50:07,109 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-20 08:50:37] 2025-10-20 12:50:07,121 | INFO     | sufficient remaining disk space (86586163200 B)
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | INFO     | update_server=False
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 08:50:37] 2025-10-20 12:50:07,122 | INFO     | aborting loop
[2025-10-20 08:50:37] 2025-10-20 12:50:07,758 | INFO     | all data control threads have been joined
[2025-10-20 08:50:37] 2025-10-20 12:50:08,065 | INFO     | all payload control threads have been joined
[2025-10-20 08:50:37] 2025-10-20 12:50:08,124 | INFO     | [job] queue monitor thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,127 | INFO     | [job] retrieve thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,127 | INFO     | [job] job monitor thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,159 | INFO     | [job] validate thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,448 | INFO     | [payload] validate_post thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,456 | INFO     | [data] copytool_in thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,545 | INFO     | all job control threads have been joined
[2025-10-20 08:50:37] 2025-10-20 12:50:08,604 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,724 | INFO     | [payload] failed_post thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,763 | INFO     | [data] control thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:08,937 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:09,070 | INFO     | [payload] control thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:09,127 | INFO     | [data] copytool_out thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:09,198 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:09,551 | INFO     | [job] control thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:09,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 08:50:37] 2025-10-20 12:50:13,733 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 08:50:37] 2025-10-20 12:50:23,047 | INFO     | [monitor] cgroup control has ended
[2025-10-20 08:50:37] 2025-10-20 12:50:24,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140467861497664)>', '<ExcThread(monitor, started 140467224172288)>']
[2025-10-20 08:50:37] 2025-10-20 12:50:29,372 | INFO     | all workflow threads have been joined
[2025-10-20 08:50:37] 2025-10-20 12:50:29,375 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 08:50:37] 2025-10-20 12:50:29,375 | INFO     | traces error code: 0
[2025-10-20 08:50:37] 2025-10-20 12:50:29,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 08:50:37] 2025-10-20 12:50:37,378 | INFO     | PID=372428 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-20 08:50:37] 2025-10-20 12:50:37,378 | INFO     | .. there are 13 such processes running
[2025-10-20 08:50:37] 2025-10-20 12:50:37,379 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 08:50:37] 2025-10-20 12:50:37,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 08:50:37] 2025-10-20 12:50:37,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 08:50:37] 2025-10-20 12:50:37,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 08:50:37] 2025-10-20 12:50:37,379 | INFO     | [monitor] control thread has ended
[2025-10-20 08:50:37] 2025-10-20 12:50:37,502 [wrapper] ==== pilot stdout END ====
[2025-10-20 08:50:37] 2025-10-20 12:50:37,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 08:50:37] 2025-10-20 12:50:37,510 [wrapper] pilotpid: 372428
[2025-10-20 08:50:37] 2025-10-20 12:50:37,513 [wrapper] Pilot exit status: 0
[2025-10-20 08:50:37] 2025-10-20 12:50:37,527 [wrapper] pandaids: 6852454453
[2025-10-20 08:50:37] 2025-10-20 12:50:37,590 [wrapper] cleanup supervisor_pilot  619632 372429
[2025-10-20 08:50:37] 2025-10-20 12:50:37,593 [wrapper] Test setup, not cleaning
[2025-10-20 08:50:37] 2025-10-20 12:50:37,596 [wrapper] apfmon messages muted
[2025-10-20 08:50:37] 2025-10-20 12:50:37,598 [wrapper] ==== wrapper stdout END ====
[2025-10-20 08:50:37] 2025-10-20 12:50:37,601 [wrapper] ==== wrapper stderr END ====
[2025-10-20 08:50:37]  *** Error codes and diagnostics ***
[2025-10-20 08:50:37]     "exeErrorCode": 0,
[2025-10-20 08:50:37]     "exeErrorDiag": "",
[2025-10-20 08:50:37]     "pilotErrorCode": 0,
[2025-10-20 08:50:37]     "pilotErrorDiag": "",
[2025-10-20 08:50:37]  *** Listing of results directory ***
[2025-10-20 08:50:37] total 341576
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas    557409 Oct 20 06:17 pilot3.tar.gz
[2025-10-20 08:50:37] -rwx------. 1 boincer umatlas     36292 Oct 20 06:21 runpilot2-wrapper.sh
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas      5112 Oct 20 06:21 queuedata.json
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas       100 Oct 20 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 08:50:37] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 20 07:28 run_atlas
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas       105 Oct 20 07:28 job.xml
[2025-10-20 08:50:37] -rw-r--r--. 2 boincer umatlas 192108962 Oct 20 07:28 EVNT.46808900._000258.pool.root.1
[2025-10-20 08:50:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 20 07:28 start_atlas.sh
[2025-10-20 08:50:37] drwxrwx--x. 2 boincer umatlas      4096 Oct 20 07:28 shared
[2025-10-20 08:50:37] -rw-r--r--. 2 boincer umatlas    569669 Oct 20 07:28 input.tar.gz
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas         0 Oct 20 07:28 boinc_lockfile
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas      2506 Oct 20 07:28 pandaJob.out
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas    976379 Oct 20 07:29 agis_schedconf.cvmfs.json
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas   1560740 Oct 20 07:29 agis_ddmendpoints.agis.ALL.json
[2025-10-20 08:50:37] drwx------. 5 boincer umatlas      4096 Oct 20 07:29 pilot3
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas      6899 Oct 20 08:46 init_data.xml
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas 151718685 Oct 20 08:49 HITS.46808902._006548.pool.root.1
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas       529 Oct 20 08:49 boinc_task_state.xml
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas      1035 Oct 20 08:49 memory_monitor_summary.json
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas    327594 Oct 20 08:49 log.46808902._006548.job.log.tgz.1
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas      7773 Oct 20 08:50 heartbeat.json
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas      8192 Oct 20 08:50 boinc_mmap_file
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas        27 Oct 20 08:50 wrapper_checkpoint.txt
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas        95 Oct 20 08:50 pilot_heartbeat.json
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas       822 Oct 20 08:50 pilotlog.txt
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas    697137 Oct 20 08:50 log.46808902._006548.job.log.1
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas       357 Oct 20 08:50 output.list
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas       620 Oct 20 08:50 runtime_log
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas   1044480 Oct 20 08:50 result.tar.gz
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas      8703 Oct 20 08:50 runtime_log.err
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas       652 Oct 20 08:50 NnQLDmpB2U8n9Rq4apOajLDm4fhM0noT9bVof3QYDmaLdMDmV1VFDn.diag
[2025-10-20 08:50:37] -rw-r--r--. 1 boincer umatlas     21944 Oct 20 08:50 stderr.txt
[2025-10-20 08:50:37] HITS file was successfully produced:
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas 151718685 Oct 20 08:49 shared/HITS.pool.root.1
[2025-10-20 08:50:37]  *** Contents of shared directory: ***
[2025-10-20 08:50:37] total 337372
[2025-10-20 08:50:37] -rw-r--r--. 2 boincer umatlas 192108962 Oct 20 07:28 ATLAS.root_0
[2025-10-20 08:50:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 20 07:28 start_atlas.sh
[2025-10-20 08:50:37] -rw-r--r--. 2 boincer umatlas    569669 Oct 20 07:28 input.tar.gz
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas 151718685 Oct 20 08:49 HITS.pool.root.1
[2025-10-20 08:50:37] -rw-------. 1 boincer umatlas   1044480 Oct 20 08:50 result.tar.gz
08:50:38 (368339): run_atlas exited; CPU time 26455.075290
08:50:38 (368339): called boinc_finish(0)

</stderr_txt>
]]>

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