Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:53:09 (3314): wrapper (7.7.26015): starting
17:53:09 (3314): wrapper: running run_atlas (--nthreads 8)
[2025-10-20 17:53:09] Arguments: --nthreads 8
[2025-10-20 17:53:09] Threads: 8
[2025-10-20 17:53:09] Checking for CVMFS
[2025-10-20 17:53:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-20 17:53:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-20 17:53:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-20 17:53:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-20 17:53:12] 2.11.2.0 28123 232330 137272 151928 2 61 23919545 25165825 4632 130560 0 109636842 99.875 70711876 4132 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-20 17:53:12] CVMFS is ok
[2025-10-20 17:53:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 17:53:12] Checking for apptainer binary...
[2025-10-20 17:53:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-20 17:53:12] Running /usr/bin/apptainer --version
[2025-10-20 17:53:12] apptainer version 1.3.2-1.el7
[2025-10-20 17:53:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 17:53:24] cg-vwn217.simple-grid.lan
[2025-10-20 17:53:24] apptainer works
[2025-10-20 17:53:24] Set ATHENA_PROC_NUMBER=8
[2025-10-20 17:53:24] Set ATHENA_CORE_NUMBER=8
[2025-10-20 17:53:24] Starting ATLAS job with PandaID=6852299182
[2025-10-20 17:53:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 21:09:38]  *** The last 200 lines of the pilot log: ***
[2025-10-20 21:09:38] 2025-10-20 19:08:37,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,643 | INFO     | time since job start (11490s) is within the limit (172800.0s)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,889 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-20 21:09:38] 2025-10-20 19:08:38,890 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-20 21:09:38] 2025-10-20 19:08:38,892 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6852299182/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,893 | INFO     | extracted standard info from prmon json
[2025-10-20 21:09:38] 2025-10-20 19:08:38,893 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 21:09:38] 2025-10-20 19:08:38,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 21:09:38] 2025-10-20 19:08:38,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 21:09:38] 2025-10-20 19:08:38,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 21:09:38] 2025-10-20 19:08:38,897 | INFO     | fitting pss+swap vs Time
[2025-10-20 21:09:38] 2025-10-20 19:08:38,898 | INFO     | sum of square deviations: 1778377530.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,899 | INFO     | sum of deviations: 61393812157.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,899 | INFO     | mean x: 1760981730.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,899 | INFO     | mean y: 2396787.776536313
[2025-10-20 21:09:38] 2025-10-20 19:08:38,899 | INFO     | -- intersect: -60790871075.61628
[2025-10-20 21:09:38] 2025-10-20 19:08:38,899 | INFO     | intersect: -60790871075.61628
[2025-10-20 21:09:38] 2025-10-20 19:08:38,900 | INFO     | chi2: 5.513917501074004
[2025-10-20 21:09:38] 2025-10-20 19:08:38,900 | INFO     | sum of square deviations: 1633472487.5
[2025-10-20 21:09:38] 2025-10-20 19:08:38,901 | INFO     | sum of deviations: 71573324711.99995
[2025-10-20 21:09:38] 2025-10-20 19:08:38,901 | INFO     | mean x: 1760981577.5
[2025-10-20 21:09:38] 2025-10-20 19:08:38,902 | INFO     | mean y: 2407206.195402299
[2025-10-20 21:09:38] 2025-10-20 19:08:38,902 | INFO     | -- intersect: -77157941206.62561
[2025-10-20 21:09:38] 2025-10-20 19:08:38,902 | INFO     | intersect: -77157941206.62561
[2025-10-20 21:09:38] 2025-10-20 19:08:38,902 | INFO     | chi2: 4.719637012293362
[2025-10-20 21:09:38] 2025-10-20 19:08:38,902 | INFO     | current chi2=4.719637012293362 (change=14.405012200961131 %)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,902 | INFO     | right removable region: 173
[2025-10-20 21:09:38] 2025-10-20 19:08:38,903 | INFO     | sum of square deviations: 1633472487.5
[2025-10-20 21:09:38] 2025-10-20 19:08:38,904 | INFO     | sum of deviations: 3483259423.5000076
[2025-10-20 21:09:38] 2025-10-20 19:08:38,904 | INFO     | mean x: 1760981882.5
[2025-10-20 21:09:38] 2025-10-20 19:08:38,904 | INFO     | mean y: 2457604.9482758623
[2025-10-20 21:09:38] 2025-10-20 19:08:38,904 | INFO     | -- intersect: -3752706184.9352117
[2025-10-20 21:09:38] 2025-10-20 19:08:38,904 | INFO     | intersect: -3752706184.9352117
[2025-10-20 21:09:38] 2025-10-20 19:08:38,905 | INFO     | chi2: 1.181804220067192
[2025-10-20 21:09:38] 2025-10-20 19:08:38,905 | INFO     | current chi2=1.181804220067192 (change=78.56688606898817 %)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,905 | INFO     | sum of square deviations: 1496660620.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,906 | INFO     | sum of deviations: -6091402294.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,906 | INFO     | mean x: 1760982035.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,906 | INFO     | mean y: 2468054.9704142013
[2025-10-20 21:09:38] 2025-10-20 19:08:38,906 | INFO     | -- intersect: 7169657372.540477
[2025-10-20 21:09:38] 2025-10-20 19:08:38,906 | INFO     | intersect: 7169657372.540477
[2025-10-20 21:09:38] 2025-10-20 19:08:38,907 | INFO     | chi2: 0.8879558205752722
[2025-10-20 21:09:38] 2025-10-20 19:08:38,907 | INFO     | current chi2=0.8879558205752722 (change=24.86438908427768 %)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,907 | INFO     | left removable region: 20
[2025-10-20 21:09:38] 2025-10-20 19:08:38,907 | INFO     | sum of square deviations: 1110539892.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,908 | INFO     | sum of deviations: 4493618070.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,908 | INFO     | mean x: 1760982157.0
[2025-10-20 21:09:38] 2025-10-20 19:08:38,908 | INFO     | mean y: 2482307.222222222
[2025-10-20 21:09:38] 2025-10-20 19:08:38,909 | INFO     | -- intersect: -7123044023.391373
[2025-10-20 21:09:38] 2025-10-20 19:08:38,909 | INFO     | intersect: -7123044023.391373
[2025-10-20 21:09:38] 2025-10-20 19:08:38,909 | INFO     | chi2: 0.00031327436565765747
[2025-10-20 21:09:38] 2025-10-20 19:08:38,909 | INFO     | -- intersect: -7123044023.391373
[2025-10-20 21:09:38] 2025-10-20 19:08:38,909 | INFO     | current memory leak: 4.05 B/s (using 153 data points, chi2=0.00)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | ..............................
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . Timing measurements:
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . get job = 0 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . initial setup = 10 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . payload setup = 126 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . stage-in = 0 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . payload execution = 11076 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . stage-out = 3 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,910 | INFO     | . log creation = 1 s
[2025-10-20 21:09:38] 2025-10-20 19:08:38,911 | INFO     | ..............................
[2025-10-20 21:09:38] 2025-10-20 19:08:39,033 | INFO     | 
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | job summary report
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | --------------------------------------------------
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | PanDA job id: 6852299182
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | task id: 46808902
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | errors: (none)
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | pilot state: finished 
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | transexitcode: 0
[2025-10-20 21:09:38] 2025-10-20 19:08:39,034 | INFO     | exeerrorcode: 0
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | exeerrordiag: 
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | exitcode: 0
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | exitmsg: OK
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | cpuconsumptiontime: 41128 s
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | nevents: 400
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | neventsw: 0
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | pid: 13677
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | pgrp: 13677
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | corecount: 8
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | event service: False
[2025-10-20 21:09:38] 2025-10-20 19:08:39,035 | INFO     | sizes: {0: 2348024, 1: 2348710, 2: 2348881, 12: 2348909, 23: 2348937, 34: 2348965, 45: 2349121, 55: 2349149, 66: 2349177, 77: 2349205, 87: 2349261, 93: 2349831, 98
[2025-10-20 21:09:38] 2025-10-20 19:08:39,036 | INFO     | --------------------------------------------------
[2025-10-20 21:09:38] 2025-10-20 19:08:39,036 | INFO     | 
[2025-10-20 21:09:38] 2025-10-20 19:08:39,036 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-20 21:09:38] 2025-10-20 19:08:39,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,124 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,124 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,124 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | job 6852299182 has completed (purged errors)
[2025-10-20 21:09:38] 2025-10-20 19:08:39,126 | INFO     | overall cleanup function is called
[2025-10-20 21:09:38] 2025-10-20 19:08:40,135 | INFO     | --- collectZombieJob: --- 10, [13677]
[2025-10-20 21:09:38] 2025-10-20 19:08:40,136 | INFO     | zombie collector waiting for pid 13677
[2025-10-20 21:09:38] 2025-10-20 19:08:40,136 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 21:09:38] 2025-10-20 19:08:40,136 | INFO     | collected zombie processes
[2025-10-20 21:09:38] 2025-10-20 19:08:40,136 | INFO     | will attempt to kill all subprocesses of pid=13677
[2025-10-20 21:09:38] 2025-10-20 19:08:40,260 | INFO     | process IDs to be killed: [13677] (in reverse order)
[2025-10-20 21:09:38] 2025-10-20 19:08:41,246 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 21:09:38] 2025-10-20 19:08:41,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 21:09:38] 2025-10-20 19:08:41,250 | INFO     | did not find any defunct processes belonging to 13677
[2025-10-20 21:09:38] 2025-10-20 19:08:41,253 | INFO     | did not find any defunct processes belonging to 13677
[2025-10-20 21:09:38] 2025-10-20 19:08:41,253 | INFO     | ready for new job
[2025-10-20 21:09:38] 2025-10-20 19:08:41,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 21:09:38] 2025-10-20 19:08:41,255 | INFO     | ***************************************
[2025-10-20 21:09:38] 2025-10-20 19:08:41,255 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 21:09:38] 2025-10-20 19:08:41,255 | INFO     | ***************************************
[2025-10-20 21:09:38] 2025-10-20 19:08:41,256 | INFO     | 
[2025-10-20 21:09:38] 2025-10-20 19:08:41,256 | INFO     | pilot is running in a VM
[2025-10-20 21:09:38] 2025-10-20 19:08:41,256 | INFO     | architecture information:
[2025-10-20 21:09:38] 2025-10-20 19:08:41,257 | INFO     | executing command: cat /etc/os-release
[2025-10-20 21:09:38] 2025-10-20 19:08:41,285 | INFO     | cat /etc/os-release:
[2025-10-20 21:09:38] NAME="CentOS Linux"
[2025-10-20 21:09:38] VERSION="7 (Core)"
[2025-10-20 21:09:38] ID="centos"
[2025-10-20 21:09:38] ID_LIKE="rhel fedora"
[2025-10-20 21:09:38] VERSION_ID="7"
[2025-10-20 21:09:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 21:09:38] ANSI_COLOR="0;31"
[2025-10-20 21:09:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 21:09:38] HOME_URL="https://www.centos.org/"
[2025-10-20 21:09:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 21:09:38] 
[2025-10-20 21:09:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 21:09:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 21:09:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 21:09:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 21:09:38] 
[2025-10-20 21:09:38] 2025-10-20 19:08:41,286 | INFO     | ***************************************
[2025-10-20 21:09:38] 2025-10-20 19:08:41,789 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-20 21:09:38] 2025-10-20 19:08:41,968 | INFO     | sufficient remaining disk space (496695771136 B)
[2025-10-20 21:09:38] 2025-10-20 19:08:41,968 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 21:09:38] 2025-10-20 19:08:41,969 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 21:09:38] 2025-10-20 19:08:41,969 | INFO     | update_server=False
[2025-10-20 21:09:38] 2025-10-20 19:08:41,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 21:09:38] 2025-10-20 19:08:41,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 21:09:38] 2025-10-20 19:08:41,969 | INFO     | aborting loop
[2025-10-20 21:09:38] 2025-10-20 19:08:42,685 | INFO     | all data control threads have been joined
[2025-10-20 21:09:38] 2025-10-20 19:08:42,880 | INFO     | all job control threads have been joined
[2025-10-20 21:09:38] 2025-10-20 19:08:42,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 21:09:38] 2025-10-20 19:08:42,975 | INFO     | [job] job monitor thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:42,975 | INFO     | [job] retrieve thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,030 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,202 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,260 | INFO     | all payload control threads have been joined
[2025-10-20 21:09:38] 2025-10-20 19:08:43,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 21:09:38] 2025-10-20 19:08:43,477 | INFO     | [payload] failed_post thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,598 | INFO     | [job] validate thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,617 | INFO     | [payload] validate_post thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,691 | INFO     | [data] control thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,886 | INFO     | [job] control thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:43,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:44,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 21:09:38] 2025-10-20 19:08:44,167 | INFO     | [data] copytool_in thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:44,248 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:44,267 | INFO     | [payload] control thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:45,058 | INFO     | [job] queue monitor thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:45,329 | INFO     | [data] copytool_out thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:08:46,934 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 21:09:38] 2025-10-20 19:09:11,815 | INFO     | PID=7055 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-20 21:09:38] 2025-10-20 19:09:11,816 | INFO     | .. there are 9 such processes running
[2025-10-20 21:09:38] 2025-10-20 19:09:11,816 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 21:09:38] 2025-10-20 19:09:11,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 21:09:38] 2025-10-20 19:09:11,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 21:09:38] 2025-10-20 19:09:27,659 | INFO     | [monitor] cgroup control has ended
[2025-10-20 21:09:38] 2025-10-20 19:09:28,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444156872512)>', '<ExcThread(monitor, started 140443719284480)>']
[2025-10-20 21:09:38] 2025-10-20 19:09:29,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 21:09:38] 2025-10-20 19:09:29,926 | INFO     | [monitor] control thread has ended
[2025-10-20 21:09:38] 2025-10-20 19:09:34,014 | INFO     | all workflow threads have been joined
[2025-10-20 21:09:38] 2025-10-20 19:09:34,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 21:09:38] 2025-10-20 19:09:34,015 | INFO     | traces error code: 0
[2025-10-20 21:09:38] 2025-10-20 19:09:34,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 21:09:38] 2025-10-20 19:09:34,335 [wrapper] ==== pilot stdout END ====
[2025-10-20 21:09:38] 2025-10-20 19:09:34,415 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 21:09:38] 2025-10-20 19:09:34,499 [wrapper] pilotpid: 7055
[2025-10-20 21:09:38] 2025-10-20 19:09:34,593 [wrapper] Pilot exit status: 0
[2025-10-20 21:09:38] 2025-10-20 19:09:35,110 [wrapper] pandaids: 6852299182
[2025-10-20 21:09:38] 2025-10-20 19:09:35,775 [wrapper] cleanup supervisor_pilot  2358 7056
[2025-10-20 21:09:38] 2025-10-20 19:09:35,781 [wrapper] Test setup, not cleaning
[2025-10-20 21:09:38] 2025-10-20 19:09:35,790 [wrapper] apfmon messages muted
[2025-10-20 21:09:38] 2025-10-20 19:09:35,799 [wrapper] ==== wrapper stdout END ====
[2025-10-20 21:09:38] 2025-10-20 19:09:35,810 [wrapper] ==== wrapper stderr END ====
[2025-10-20 21:09:38]  *** Error codes and diagnostics ***
[2025-10-20 21:09:38]     "exeErrorCode": 0,
[2025-10-20 21:09:38]     "exeErrorDiag": "",
[2025-10-20 21:09:38]     "pilotErrorCode": 0,
[2025-10-20 21:09:38]     "pilotErrorDiag": "",
[2025-10-20 21:09:38]  *** Listing of results directory ***
[2025-10-20 21:09:38] total 341336
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc    557409 Oct 20 08:47 pilot3.tar.gz
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc      5112 Oct 20 08:51 queuedata.json
[2025-10-20 21:09:38] -rwx------. 1 boinc boinc     36292 Oct 20 08:52 runpilot2-wrapper.sh
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc       100 Oct 20 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 21:09:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct 20 17:53 run_atlas
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc       105 Oct 20 17:53 job.xml
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc      6390 Oct 20 17:53 init_data.xml
[2025-10-20 21:09:38] -rw-r--r--. 2 boinc boinc 188064121 Oct 20 17:53 EVNT.46808900._000236.pool.root.1
[2025-10-20 21:09:38] -rw-r--r--. 2 boinc boinc     15120 Oct 20 17:53 start_atlas.sh
[2025-10-20 21:09:38] drwxrwx--x. 2 boinc boinc        68 Oct 20 17:53 shared
[2025-10-20 21:09:38] -rw-r--r--. 2 boinc boinc    569675 Oct 20 17:53 input.tar.gz
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc         0 Oct 20 17:53 boinc_lockfile
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc      2506 Oct 20 17:53 pandaJob.out
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc    978462 Oct 20 17:57 agis_schedconf.cvmfs.json
[2025-10-20 21:09:38] drwx------. 5 boinc boinc      4096 Oct 20 17:57 pilot3
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc 153633175 Oct 20 21:05 HITS.46808902._006000.pool.root.1
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc       531 Oct 20 21:06 boinc_task_state.xml
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc      1012 Oct 20 21:06 memory_monitor_summary.json
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc   1560740 Oct 20 21:07 agis_ddmendpoints.agis.ALL.json
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc    421861 Oct 20 21:07 log.46808902._006000.job.log.tgz.1
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc        95 Oct 20 21:08 pilot_heartbeat.json
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc      7773 Oct 20 21:08 heartbeat.json
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc      4884 Oct 20 21:09 pilotlog.txt
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc      8192 Oct 20 21:09 boinc_mmap_file
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc        28 Oct 20 21:09 wrapper_checkpoint.txt
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc   1548645 Oct 20 21:09 log.46808902._006000.job.log.1
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc       357 Oct 20 21:09 output.list
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc       620 Oct 20 21:09 runtime_log
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc   1986560 Oct 20 21:09 result.tar.gz
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc       656 Oct 20 21:09 xVYLDmavyU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtFdMDmNM1iln.diag
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc      8717 Oct 20 21:09 runtime_log.err
[2025-10-20 21:09:38] -rw-r--r--. 1 boinc boinc     20807 Oct 20 21:09 stderr.txt
[2025-10-20 21:09:38] HITS file was successfully produced:
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc 153633175 Oct 20 21:05 shared/HITS.pool.root.1
[2025-10-20 21:09:38]  *** Contents of shared directory: ***
[2025-10-20 21:09:38] total 336212
[2025-10-20 21:09:38] -rw-r--r--. 2 boinc boinc 188064121 Oct 20 17:53 ATLAS.root_0
[2025-10-20 21:09:38] -rw-r--r--. 2 boinc boinc     15120 Oct 20 17:53 start_atlas.sh
[2025-10-20 21:09:38] -rw-r--r--. 2 boinc boinc    569675 Oct 20 17:53 input.tar.gz
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc 153633175 Oct 20 21:05 HITS.pool.root.1
[2025-10-20 21:09:38] -rw-------. 1 boinc boinc   1986560 Oct 20 21:09 result.tar.gz
21:09:39 (3314): run_atlas exited; CPU time 41271.496603
21:09:39 (3314): called boinc_finish(0)

</stderr_txt>
]]>

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