Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:06:07 (1115931): wrapper (7.7.26015): starting
04:06:07 (1115931): wrapper: running run_atlas (--nthreads 3)
[2025-10-20 04:06:07] Arguments: --nthreads 3
[2025-10-20 04:06:07] Threads: 3
[2025-10-20 04:06:07] Checking for CVMFS
[2025-10-20 04:06:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-20 04:06:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-20 04:06:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-20 04:06:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-20 04:06:11] 2.9.2.0 1116126 0 30036 151906 3 1 28465349 36864000 0 130560 0 0 0.000 1291 933 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-20 04:06:11] CVMFS is ok
[2025-10-20 04:06:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-20 04:06:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-20 04:06:11] Further information can be found at the LHC@home message board.
[2025-10-20 04:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 04:06:11] Checking for apptainer binary...
[2025-10-20 04:06:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-20 04:06:11] Running /usr/bin/apptainer --version
[2025-10-20 04:06:11] apptainer version 1.4.1-1.1
[2025-10-20 04:06:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 04:06:11] belleA253
[2025-10-20 04:06:11] apptainer works
[2025-10-20 04:06:11] Set ATHENA_PROC_NUMBER=3
[2025-10-20 04:06:11] Set ATHENA_CORE_NUMBER=3
[2025-10-20 04:06:11] Starting ATLAS job with PandaID=6847326376
[2025-10-20 04:06:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 05:40:33]  *** The last 200 lines of the pilot log: ***
[2025-10-20 05:40:33]  storage_token=
[2025-10-20 05:40:33]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6847326376/log.46771637._015983.job.log.tgz.1
[2025-10-20 05:40:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/b9/log.46771637._015983.job.log.tgz.1
[2025-10-20 05:40:33]  workdir=None
[2025-10-20 05:40:33] ]
[2025-10-20 05:40:33] 2025-10-20 03:39:43,444 | INFO     | transferring file log.46771637._015983.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6847326376/log.46771637._015983.job.log.tgz.1 to /local/data/boinc/
[2025-10-20 05:40:33] 2025-10-20 03:39:43,444 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6847326376/log.46771637._015983.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._0159
[2025-10-20 05:40:33] 2025-10-20 03:39:43,457 | INFO     | adding to output.list: log.46771637._015983.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/b9/log.46771637._015983.job.log.tg
[2025-10-20 05:40:33] 2025-10-20 03:39:43,458 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-20 05:40:33] 2025-10-20 03:39:43,458 | INFO     | summary of transferred files:
[2025-10-20 05:40:33] 2025-10-20 03:39:43,458 | INFO     |  -- lfn=log.46771637._015983.job.log.tgz.1, status_code=0, status=transferred
[2025-10-20 05:40:33] 2025-10-20 03:39:43,458 | INFO     | stage-out finished correctly
[2025-10-20 05:40:33] 2025-10-20 03:39:44,687 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-20 05:40:33] 2025-10-20 03:39:45,209 | INFO     | time since job start (5604s) is within the limit (172800.0s)
[2025-10-20 05:40:33] 2025-10-20 03:39:46,501 | INFO     | job 6847326376 has state=finished
[2025-10-20 05:40:33] 2025-10-20 03:39:46,502 | INFO     | preparing for final server update for job 6847326376 in state='finished'
[2025-10-20 05:40:33] 2025-10-20 03:39:46,502 | INFO     | this job has now completed (state=finished)
[2025-10-20 05:40:33] 2025-10-20 03:39:46,502 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-20 05:40:33] 2025-10-20 03:39:46,502 | INFO     | log transfer has been attempted: DONE
[2025-10-20 05:40:33] 2025-10-20 03:39:46,502 | INFO     | job 6847326376 has finished - writing final server update
[2025-10-20 05:40:33] 2025-10-20 03:39:46,503 | INFO     | total number of processed events: 400 (read)
[2025-10-20 05:40:33] 2025-10-20 03:39:46,503 | INFO     | executing command: lscpu
[2025-10-20 05:40:33] 2025-10-20 03:39:46,520 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-20 05:40:33] 2025-10-20 03:39:47,215 | INFO     | time since job start (5606s) is within the limit (172800.0s)
[2025-10-20 05:40:33] 2025-10-20 03:39:48,983 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-20 05:40:33] 2025-10-20 03:39:48,984 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3788.5403333333343
[2025-10-20 05:40:33] 2025-10-20 03:39:48,985 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6847326376/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 05:40:33] 2025-10-20 03:39:48,985 | INFO     | extracted standard info from prmon json
[2025-10-20 05:40:33] 2025-10-20 03:39:48,985 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 05:40:33] 2025-10-20 03:39:48,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 05:40:33] 2025-10-20 03:39:48,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 05:40:33] 2025-10-20 03:39:48,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 05:40:33] 2025-10-20 03:39:48,986 | INFO     | fitting pss+swap vs Time
[2025-10-20 05:40:33] 2025-10-20 03:39:48,986 | INFO     | sum of square deviations: 190403570.0
[2025-10-20 05:40:33] 2025-10-20 03:39:48,986 | INFO     | sum of deviations: -1658483799.0000005
[2025-10-20 05:40:33] 2025-10-20 03:39:48,986 | INFO     | mean x: 1760928868.0
[2025-10-20 05:40:33] 2025-10-20 03:39:48,986 | INFO     | mean y: 2372539.3411764707
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | -- intersect: 15340698384.646547
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | intersect: 15340698384.646547
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | chi2: 0.06603241645712661
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | -- intersect: 15340698384.646547
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | current memory leak: -8.71 B/s (using 85 data points, chi2=0.07)
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | could have reported an average CPU frequency of 3921 MHz (7 samples)
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | ..............................
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . Timing measurements:
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . get job = 0 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . initial setup = 1 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . payload setup = 3 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . stage-in = 0 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . payload execution = 5582 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . stage-out = 0 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | . log creation = 0 s
[2025-10-20 05:40:33] 2025-10-20 03:39:48,987 | INFO     | ..............................
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | 
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | job summary report
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | --------------------------------------------------
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | PanDA job id: 6847326376
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | task id: 46771637
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | errors: (none)
[2025-10-20 05:40:33] 2025-10-20 03:39:49,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | pilot state: finished 
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | transexitcode: 0
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | exeerrorcode: 0
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | exeerrordiag: 
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | exitcode: 0
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | exitmsg: OK
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | cpuconsumptiontime: 16114 s
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | nevents: 400
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | neventsw: 0
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | pid: 1126660
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | pgrp: 1126660
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | corecount: 3
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | event service: False
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | sizes: {0: 2348930, 3: 2349192, 11: 2349220, 5589: 2385002, 5590: 2385002, 5595: 2385196}
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | --------------------------------------------------
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | 
[2025-10-20 05:40:33] 2025-10-20 03:39:49,019 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,031 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | job 6847326376 has completed (purged errors)
[2025-10-20 05:40:33] 2025-10-20 03:39:49,032 | INFO     | overall cleanup function is called
[2025-10-20 05:40:33] 2025-10-20 03:39:49,383 | WARNING  | process 1126660 can no longer be monitored (due to stat problems) - aborting
[2025-10-20 05:40:33] 2025-10-20 03:39:49,412 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 05:40:33] 2025-10-20 03:39:49,412 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 05:40:33] 2025-10-20 03:39:49,412 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-20 05:40:33] 2025-10-20 03:39:49,412 | WARNING  | maxPSS not found in memory monitor output
[2025-10-20 05:40:33] 2025-10-20 03:39:49,412 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6847326376/payload.stdout) since it has not been created yet
[2025-10-20 05:40:33] 2025-10-20 03:39:49,413 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-20 05:40:33] 2025-10-20 03:39:49,423 | INFO     | sufficient remaining disk space (377793544192 B)
[2025-10-20 05:40:33] 2025-10-20 03:39:49,423 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-20 05:40:33] 2025-10-20 03:39:49,423 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6847326376/HITS.46771637._015983.pool.root.1 since it does not exist
[2025-10-20 05:40:33] 2025-10-20 03:39:49,462 | INFO     | number of running child processes to parent process 1126660: 1
[2025-10-20 05:40:33] 2025-10-20 03:39:49,462 | INFO     | maximum number of monitored processes: 6
[2025-10-20 05:40:33] 2025-10-20 03:39:49,462 | INFO     | aborting job monitoring since job object (job id=6847326376) has expired
[2025-10-20 05:40:33] 2025-10-20 03:39:50,038 | INFO     | --- collectZombieJob: --- 10, [1126660]
[2025-10-20 05:40:33] 2025-10-20 03:39:50,038 | INFO     | zombie collector waiting for pid 1126660
[2025-10-20 05:40:33] 2025-10-20 03:39:50,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 05:40:33] 2025-10-20 03:39:50,039 | INFO     | collected zombie processes
[2025-10-20 05:40:33] 2025-10-20 03:39:50,039 | INFO     | will attempt to kill all subprocesses of pid=1126660
[2025-10-20 05:40:33] 2025-10-20 03:39:50,078 | INFO     | process IDs to be killed: [1126660] (in reverse order)
[2025-10-20 05:40:33] 2025-10-20 03:39:50,104 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 05:40:33] 2025-10-20 03:39:50,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 05:40:33] 2025-10-20 03:39:50,105 | INFO     | did not find any defunct processes belonging to 1126660
[2025-10-20 05:40:33] 2025-10-20 03:39:50,106 | INFO     | did not find any defunct processes belonging to 1126660
[2025-10-20 05:40:33] 2025-10-20 03:39:50,106 | INFO     | ready for new job
[2025-10-20 05:40:33] 2025-10-20 03:39:50,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 05:40:33] 2025-10-20 03:39:50,107 | INFO     | ***************************************
[2025-10-20 05:40:33] 2025-10-20 03:39:50,107 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 05:40:33] 2025-10-20 03:39:50,107 | INFO     | ***************************************
[2025-10-20 05:40:33] 2025-10-20 03:39:50,107 | INFO     | 
[2025-10-20 05:40:33] 2025-10-20 03:39:50,108 | INFO     | architecture information:
[2025-10-20 05:40:33] 2025-10-20 03:39:50,108 | INFO     | executing command: cat /etc/os-release
[2025-10-20 05:40:33] 2025-10-20 03:39:50,117 | INFO     | cat /etc/os-release:
[2025-10-20 05:40:33] NAME="CentOS Linux"
[2025-10-20 05:40:33] VERSION="7 (Core)"
[2025-10-20 05:40:33] ID="centos"
[2025-10-20 05:40:33] ID_LIKE="rhel fedora"
[2025-10-20 05:40:33] VERSION_ID="7"
[2025-10-20 05:40:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 05:40:33] ANSI_COLOR="0;31"
[2025-10-20 05:40:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 05:40:33] HOME_URL="https://www.centos.org/"
[2025-10-20 05:40:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 05:40:33] 
[2025-10-20 05:40:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 05:40:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 05:40:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 05:40:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 05:40:33] 
[2025-10-20 05:40:33] 2025-10-20 03:39:50,117 | INFO     | ***************************************
[2025-10-20 05:40:33] 2025-10-20 03:39:50,620 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-20 05:40:33] 2025-10-20 03:39:50,634 | INFO     | sufficient remaining disk space (377794592768 B)
[2025-10-20 05:40:33] 2025-10-20 03:39:50,634 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 05:40:33] 2025-10-20 03:39:50,634 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 05:40:33] 2025-10-20 03:39:50,634 | INFO     | update_server=False
[2025-10-20 05:40:33] 2025-10-20 03:39:50,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 05:40:33] 2025-10-20 03:39:50,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 05:40:33] 2025-10-20 03:39:50,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 05:40:33] 2025-10-20 03:39:50,635 | INFO     | aborting loop
[2025-10-20 05:40:33] 2025-10-20 03:39:50,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 05:40:33] 2025-10-20 03:39:51,275 | INFO     | all job control threads have been joined
[2025-10-20 05:40:33] 2025-10-20 03:39:51,318 | INFO     | all payload control threads have been joined
[2025-10-20 05:40:33] 2025-10-20 03:39:51,322 | INFO     | all data control threads have been joined
[2025-10-20 05:40:33] 2025-10-20 03:39:51,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 05:40:33] 2025-10-20 03:39:51,639 | INFO     | [job] retrieve thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:51,639 | INFO     | [job] job monitor thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:51,639 | INFO     | [job] queue monitor thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:51,665 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:51,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,195 | INFO     | [payload] validate_post thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,280 | INFO     | [job] control thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,324 | INFO     | [payload] control thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,324 | INFO     | [data] control thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,468 | INFO     | [payload] failed_post thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,619 | INFO     | [data] copytool_in thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,841 | INFO     | [job] validate thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,946 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:52,962 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:53,512 | INFO     | [data] copytool_out thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:39:54,732 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 05:40:33] 2025-10-20 03:40:20,341 | INFO     | PID=1120202 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-20 05:40:33] 2025-10-20 03:40:20,341 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 05:40:33] 2025-10-20 03:40:20,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 05:40:33] 2025-10-20 03:40:20,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 05:40:33] 2025-10-20 03:40:27,170 | INFO     | [monitor] cgroup control has ended
[2025-10-20 05:40:33] 2025-10-20 03:40:28,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672410572608)>', '<ExcThread(monitor, started 139671371761408)>']
[2025-10-20 05:40:33] 2025-10-20 03:40:28,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 05:40:33] 2025-10-20 03:40:28,384 | INFO     | [monitor] control thread has ended
[2025-10-20 05:40:33] 2025-10-20 03:40:33,184 | INFO     | all workflow threads have been joined
[2025-10-20 05:40:33] 2025-10-20 03:40:33,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 05:40:33] 2025-10-20 03:40:33,184 | INFO     | traces error code: 0
[2025-10-20 05:40:33] 2025-10-20 03:40:33,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 05:40:33] 2025-10-20 03:40:33,234 [wrapper] ==== pilot stdout END ====
[2025-10-20 05:40:33] 2025-10-20 03:40:33,237 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 05:40:33] 2025-10-20 03:40:33,239 [wrapper] pilotpid: 1120202
[2025-10-20 05:40:33] 2025-10-20 03:40:33,242 [wrapper] Pilot exit status: 0
[2025-10-20 05:40:33] 2025-10-20 03:40:33,249 [wrapper] pandaids: 6847326376
[2025-10-20 05:40:33] 2025-10-20 03:40:33,266 [wrapper] cleanup supervisor_pilot 1139007 1120203
[2025-10-20 05:40:33] 2025-10-20 03:40:33,269 [wrapper] Test setup, not cleaning
[2025-10-20 05:40:33] 2025-10-20 03:40:33,271 [wrapper] apfmon messages muted
[2025-10-20 05:40:33] 2025-10-20 03:40:33,274 [wrapper] ==== wrapper stdout END ====
[2025-10-20 05:40:33] 2025-10-20 03:40:33,276 [wrapper] ==== wrapper stderr END ====
[2025-10-20 05:40:33]  *** Error codes and diagnostics ***
[2025-10-20 05:40:33]     "exeErrorCode": 0,
[2025-10-20 05:40:33]     "exeErrorDiag": "",
[2025-10-20 05:40:33]     "pilotErrorCode": 0,
[2025-10-20 05:40:33]     "pilotErrorDiag": "",
[2025-10-20 05:40:33]  *** Listing of results directory ***
[2025-10-20 05:40:33] total 443488
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc    557409 Oct 16 19:33 pilot3.tar.gz
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc      5112 Oct 16 20:19 queuedata.json
[2025-10-20 05:40:33] -rwx------ 1 boinc boinc     36292 Oct 16 20:20 runpilot2-wrapper.sh
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc       100 Oct 20 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 05:40:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 20 04:06 run_atlas
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc       105 Oct 20 04:06 job.xml
[2025-10-20 05:40:33] -rw-r--r-- 2 boinc boinc 231143046 Oct 20 04:06 EVNT.46771634._000617.pool.root.1
[2025-10-20 05:40:33] -rw-r--r-- 2 boinc boinc    569674 Oct 20 04:06 input.tar.gz
[2025-10-20 05:40:33] -rw-r--r-- 2 boinc boinc     15120 Oct 20 04:06 start_atlas.sh
[2025-10-20 05:40:33] drwxrwx--x 2 boinc boinc      4096 Oct 20 04:06 shared
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc         0 Oct 20 04:06 boinc_setup_complete
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc      6448 Oct 20 04:06 init_data.xml
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc         0 Oct 20 04:06 boinc_lockfile
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc      2557 Oct 20 04:06 pandaJob.out
[2025-10-20 05:40:33] -rw------- 1 boinc boinc    976750 Oct 20 04:06 agis_schedconf.cvmfs.json
[2025-10-20 05:40:33] -rw------- 1 boinc boinc   1560740 Oct 20 04:06 agis_ddmendpoints.agis.ALL.json
[2025-10-20 05:40:33] drwx------ 5 boinc boinc      4096 Oct 20 04:06 pilot3
[2025-10-20 05:40:33] -rw------- 1 boinc boinc 216906414 Oct 20 05:39 HITS.46771637._015983.pool.root.1
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc       529 Oct 20 05:39 boinc_task_state.xml
[2025-10-20 05:40:33] -rw------- 1 boinc boinc      1025 Oct 20 05:39 memory_monitor_summary.json
[2025-10-20 05:40:33] -rw------- 1 boinc boinc    272281 Oct 20 05:39 log.46771637._015983.job.log.tgz.1
[2025-10-20 05:40:33] -rw------- 1 boinc boinc        95 Oct 20 05:39 pilot_heartbeat.json
[2025-10-20 05:40:33] -rw------- 1 boinc boinc      7747 Oct 20 05:39 heartbeat.json
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc        27 Oct 20 05:40 wrapper_checkpoint.txt
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc      8192 Oct 20 05:40 boinc_mmap_file
[2025-10-20 05:40:33] -rw------- 1 boinc boinc      4752 Oct 20 05:40 pilotlog.txt
[2025-10-20 05:40:33] -rw------- 1 boinc boinc    817941 Oct 20 05:40 log.46771637._015983.job.log.1
[2025-10-20 05:40:33] -rw------- 1 boinc boinc       357 Oct 20 05:40 output.list
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc       620 Oct 20 05:40 runtime_log
[2025-10-20 05:40:33] -rw------- 1 boinc boinc   1105920 Oct 20 05:40 result.tar.gz
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc      8792 Oct 20 05:40 runtime_log.err
[2025-10-20 05:40:33] -rw------- 1 boinc boinc       661 Oct 20 05:40 79iMDmDlhT8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZqYMDmmRKDMo.diag
[2025-10-20 05:40:33] -rw-r--r-- 1 boinc boinc     22335 Oct 20 05:40 stderr.txt
[2025-10-20 05:40:33] HITS file was successfully produced:
[2025-10-20 05:40:33] -rw------- 1 boinc boinc 216906414 Oct 20 05:39 shared/HITS.pool.root.1
[2025-10-20 05:40:33]  *** Contents of shared directory: ***
[2025-10-20 05:40:33] total 439216
[2025-10-20 05:40:33] -rw-r--r-- 2 boinc boinc 231143046 Oct 20 04:06 ATLAS.root_0
[2025-10-20 05:40:33] -rw-r--r-- 2 boinc boinc    569674 Oct 20 04:06 input.tar.gz
[2025-10-20 05:40:33] -rw-r--r-- 2 boinc boinc     15120 Oct 20 04:06 start_atlas.sh
[2025-10-20 05:40:33] -rw------- 1 boinc boinc 216906414 Oct 20 05:39 HITS.pool.root.1
[2025-10-20 05:40:33] -rw------- 1 boinc boinc   1105920 Oct 20 05:40 result.tar.gz
05:40:34 (1115931): run_atlas exited; CPU time 16133.857890
05:40:34 (1115931): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN