Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:31:27 (21470): wrapper (7.7.26015): starting
16:31:27 (21470): wrapper: running run_atlas (--nthreads 12)
[2025-10-19 16:31:27] Arguments: --nthreads 12
[2025-10-19 16:31:27] Threads: 12
[2025-10-19 16:31:27] Checking for CVMFS
[2025-10-19 16:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 16:31:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 16:31:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 16:31:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 16:31:27] 2.11.2.0 2991 233399 100360 151898 3 1 10331344 20275200 1 130560 1 115737673 99.984 13814262 12713 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-19 16:31:27] CVMFS is ok
[2025-10-19 16:31:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 16:31:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 16:31:27] Further information can be found at the LHC@home message board.
[2025-10-19 16:31:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 16:31:27] Checking for apptainer binary...
[2025-10-19 16:31:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 16:31:27] Running /usr/bin/apptainer --version
[2025-10-19 16:31:27] apptainer version 1.3.2-1.el7
[2025-10-19 16:31:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 16:31:28] c-205-32.aglt2.org
[2025-10-19 16:31:28] apptainer works
[2025-10-19 16:31:28] Set ATHENA_PROC_NUMBER=12
[2025-10-19 16:31:28] Set ATHENA_CORE_NUMBER=12
[2025-10-19 16:31:28] Starting ATLAS job with PandaID=6851800355
[2025-10-19 16:31:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 17:28:56]  *** The last 200 lines of the pilot log: ***
[2025-10-19 17:28:56]  storage_token=
[2025-10-19 17:28:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6851800355/log.46809188._003167.job.log.tgz.1
[2025-10-19 17:28:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/75/log.46809188._003167.job.log.tgz.1
[2025-10-19 17:28:56]  workdir=None
[2025-10-19 17:28:56] ]
[2025-10-19 17:28:56] 2025-10-19 21:28:14,525 | INFO     | transferring file log.46809188._003167.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6851800355/log.46809188._003167.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-19 17:28:56] 2025-10-19 21:28:14,525 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6851800355/log.46809188._003167.job.log.tgz.1 /tmp/boinchome/slots/0/log.46809188._003167.job
[2025-10-19 17:28:56] 2025-10-19 21:28:14,546 | INFO     | adding to output.list: log.46809188._003167.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/75/log.46809188._003167.job.log.tg
[2025-10-19 17:28:56] 2025-10-19 21:28:14,547 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 17:28:56] 2025-10-19 21:28:14,548 | INFO     | summary of transferred files:
[2025-10-19 17:28:56] 2025-10-19 21:28:14,548 | INFO     |  -- lfn=log.46809188._003167.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 17:28:56] 2025-10-19 21:28:14,548 | INFO     | stage-out finished correctly
[2025-10-19 17:28:56] 2025-10-19 21:28:14,712 | INFO     | time since job start (3391s) is within the limit (172800.0s)
[2025-10-19 17:28:56] 2025-10-19 21:28:15,782 | WARNING  | process 31574 can no longer be monitored (due to stat problems) - aborting
[2025-10-19 17:28:56] 2025-10-19 21:28:15,783 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6851800355/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 17:28:56] 2025-10-19 21:28:15,873 | INFO     | number of running child processes to parent process 31574: 1
[2025-10-19 17:28:56] 2025-10-19 21:28:15,873 | INFO     | maximum number of monitored processes: 6
[2025-10-19 17:28:56] 2025-10-19 21:28:16,718 | INFO     | time since job start (3393s) is within the limit (172800.0s)
[2025-10-19 17:28:56] 2025-10-19 21:28:17,138 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 17:28:56] 2025-10-19 21:28:18,376 | INFO     | monitor loop #256: job 0:6851800355 is in state 'finished'
[2025-10-19 17:28:56] 2025-10-19 21:28:18,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 17:28:56] 2025-10-19 21:28:18,723 | INFO     | time since job start (3395s) is within the limit (172800.0s)
[2025-10-19 17:28:56] 2025-10-19 21:28:19,209 | INFO     | job 6851800355 has state=finished
[2025-10-19 17:28:56] 2025-10-19 21:28:19,209 | INFO     | preparing for final server update for job 6851800355 in state='finished'
[2025-10-19 17:28:56] 2025-10-19 21:28:19,210 | INFO     | this job has now completed (state=finished)
[2025-10-19 17:28:56] 2025-10-19 21:28:19,210 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 17:28:56] 2025-10-19 21:28:19,210 | INFO     | log transfer has been attempted: DONE
[2025-10-19 17:28:56] 2025-10-19 21:28:19,210 | INFO     | job 6851800355 has finished - writing final server update
[2025-10-19 17:28:56] 2025-10-19 21:28:19,211 | INFO     | total number of processed events: 400 (read)
[2025-10-19 17:28:56] 2025-10-19 21:28:19,212 | INFO     | executing command: lscpu
[2025-10-19 17:28:56] 2025-10-19 21:28:19,245 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 17:28:56] 2025-10-19 21:28:20,728 | INFO     | time since job start (3397s) is within the limit (172800.0s)
[2025-10-19 17:28:56] 2025-10-19 21:28:20,891 | INFO     | monitor loop #257: job 0:6851800355 is in state 'finished'
[2025-10-19 17:28:56] 2025-10-19 21:28:20,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 17:28:56] 2025-10-19 21:28:22,734 | INFO     | time since job start (3399s) is within the limit (172800.0s)
[2025-10-19 17:28:56] 2025-10-19 21:28:23,394 | INFO     | monitor loop #258: job 0:6851800355 is in state 'finished'
[2025-10-19 17:28:56] 2025-10-19 21:28:23,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,102 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-19 17:28:56] 2025-10-19 21:28:24,106 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-19 17:28:56] 2025-10-19 21:28:24,108 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6851800355/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,109 | INFO     | extracted standard info from prmon json
[2025-10-19 17:28:56] 2025-10-19 21:28:24,110 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 17:28:56] 2025-10-19 21:28:24,110 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 17:28:56] 2025-10-19 21:28:24,110 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 17:28:56] 2025-10-19 21:28:24,110 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 17:28:56] 2025-10-19 21:28:24,112 | INFO     | fitting pss+swap vs Time
[2025-10-19 17:28:56] 2025-10-19 21:28:24,113 | INFO     | sum of square deviations: 36465800.0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,113 | INFO     | sum of deviations: -2996938052.0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,113 | INFO     | mean x: 1760907701.0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,114 | INFO     | mean y: 2871606.1428571427
[2025-10-19 17:28:56] 2025-10-19 21:28:24,114 | INFO     | -- intersect: 144722891328.36856
[2025-10-19 17:28:56] 2025-10-19 21:28:24,114 | INFO     | intersect: 144722891328.36856
[2025-10-19 17:28:56] 2025-10-19 21:28:24,114 | INFO     | chi2: 0.05174983682222685
[2025-10-19 17:28:56] 2025-10-19 21:28:24,114 | INFO     | -- intersect: 144722891328.36856
[2025-10-19 17:28:56] 2025-10-19 21:28:24,115 | INFO     | current memory leak: -82.18 B/s (using 49 data points, chi2=0.05)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,115 | INFO     | could have reported an average CPU frequency of 1922 MHz (5 samples)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,115 | INFO     | ..............................
[2025-10-19 17:28:56] 2025-10-19 21:28:24,115 | INFO     | . Timing measurements:
[2025-10-19 17:28:56] 2025-10-19 21:28:24,116 | INFO     | . get job = 0 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,116 | INFO     | . initial setup = 2 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,116 | INFO     | . payload setup = 7 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,116 | INFO     | . stage-in = 0 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,116 | INFO     | . payload execution = 3362 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,116 | INFO     | . stage-out = 0 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,117 | INFO     | . log creation = 0 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,117 | INFO     | ..............................
[2025-10-19 17:28:56] 2025-10-19 21:28:24,199 | INFO     | 
[2025-10-19 17:28:56] 2025-10-19 21:28:24,199 | INFO     | job summary report
[2025-10-19 17:28:56] 2025-10-19 21:28:24,199 | INFO     | --------------------------------------------------
[2025-10-19 17:28:56] 2025-10-19 21:28:24,199 | INFO     | PanDA job id: 6851800355
[2025-10-19 17:28:56] 2025-10-19 21:28:24,200 | INFO     | task id: 46809188
[2025-10-19 17:28:56] 2025-10-19 21:28:24,200 | INFO     | errors: (none)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,200 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 17:28:56] 2025-10-19 21:28:24,200 | INFO     | pilot state: finished 
[2025-10-19 17:28:56] 2025-10-19 21:28:24,200 | INFO     | transexitcode: 0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,200 | INFO     | exeerrorcode: 0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | exeerrordiag: 
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | exitcode: 0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | exitmsg: OK
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | cpuconsumptiontime: 35888 s
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | nevents: 400
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | neventsw: 0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,201 | INFO     | pid: 31574
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | pgrp: 31574
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | corecount: 12
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | event service: False
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | sizes: {0: 2348837, 1: 2348865, 5: 2349127, 11: 2349183, 3373: 2374730, 3375: 2383728, 3377: 2383912, 3384: 2384138}
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | --------------------------------------------------
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | 
[2025-10-19 17:28:56] 2025-10-19 21:28:24,202 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-19 17:28:56] 2025-10-19 21:28:24,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,334 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | job 6851800355 has completed (purged errors)
[2025-10-19 17:28:56] 2025-10-19 21:28:24,336 | INFO     | overall cleanup function is called
[2025-10-19 17:28:56] 2025-10-19 21:28:25,344 | INFO     | --- collectZombieJob: --- 10, [31574]
[2025-10-19 17:28:56] 2025-10-19 21:28:25,344 | INFO     | zombie collector waiting for pid 31574
[2025-10-19 17:28:56] 2025-10-19 21:28:25,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 17:28:56] 2025-10-19 21:28:25,344 | INFO     | collected zombie processes
[2025-10-19 17:28:56] 2025-10-19 21:28:25,344 | INFO     | will attempt to kill all subprocesses of pid=31574
[2025-10-19 17:28:56] 2025-10-19 21:28:25,435 | INFO     | process IDs to be killed: [31574] (in reverse order)
[2025-10-19 17:28:56] 2025-10-19 21:28:25,487 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 17:28:56] 2025-10-19 21:28:25,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 17:28:56] 2025-10-19 21:28:25,490 | INFO     | did not find any defunct processes belonging to 31574
[2025-10-19 17:28:56] 2025-10-19 21:28:25,492 | INFO     | did not find any defunct processes belonging to 31574
[2025-10-19 17:28:56] 2025-10-19 21:28:25,492 | INFO     | ready for new job
[2025-10-19 17:28:56] 2025-10-19 21:28:25,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 17:28:56] 2025-10-19 21:28:25,494 | INFO     | ***************************************
[2025-10-19 17:28:56] 2025-10-19 21:28:25,494 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 17:28:56] 2025-10-19 21:28:25,494 | INFO     | ***************************************
[2025-10-19 17:28:56] 2025-10-19 21:28:25,494 | INFO     | 
[2025-10-19 17:28:56] 2025-10-19 21:28:25,495 | INFO     | architecture information:
[2025-10-19 17:28:56] 2025-10-19 21:28:25,495 | INFO     | executing command: cat /etc/os-release
[2025-10-19 17:28:56] 2025-10-19 21:28:25,512 | INFO     | cat /etc/os-release:
[2025-10-19 17:28:56] NAME="CentOS Linux"
[2025-10-19 17:28:56] VERSION="7 (Core)"
[2025-10-19 17:28:56] ID="centos"
[2025-10-19 17:28:56] ID_LIKE="rhel fedora"
[2025-10-19 17:28:56] VERSION_ID="7"
[2025-10-19 17:28:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 17:28:56] ANSI_COLOR="0;31"
[2025-10-19 17:28:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 17:28:56] HOME_URL="https://www.centos.org/"
[2025-10-19 17:28:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 17:28:56] 
[2025-10-19 17:28:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 17:28:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 17:28:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 17:28:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 17:28:56] 
[2025-10-19 17:28:56] 2025-10-19 21:28:25,512 | INFO     | ***************************************
[2025-10-19 17:28:56] 2025-10-19 21:28:26,015 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-19 17:28:56] 2025-10-19 21:28:26,033 | INFO     | sufficient remaining disk space (29462888448 B)
[2025-10-19 17:28:56] 2025-10-19 21:28:26,034 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 17:28:56] 2025-10-19 21:28:26,034 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 17:28:56] 2025-10-19 21:28:26,034 | INFO     | update_server=False
[2025-10-19 17:28:56] 2025-10-19 21:28:26,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 17:28:56] 2025-10-19 21:28:26,035 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 17:28:56] 2025-10-19 21:28:26,035 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 17:28:56] 2025-10-19 21:28:26,408 | INFO     | all payload control threads have been joined
[2025-10-19 17:28:56] 2025-10-19 21:28:26,502 | INFO     | all job control threads have been joined
[2025-10-19 17:28:56] 2025-10-19 21:28:26,517 | INFO     | all data control threads have been joined
[2025-10-19 17:28:56] 2025-10-19 21:28:26,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 17:28:56] 2025-10-19 21:28:26,920 | INFO     | aborting loop
[2025-10-19 17:28:56] 2025-10-19 21:28:27,040 | INFO     | [job] retrieve thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,041 | INFO     | [job] queue monitor thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,093 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,114 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,191 | INFO     | [data] copytool_in thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,275 | INFO     | [payload] failed_post thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,413 | INFO     | [payload] control thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,489 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,503 | INFO     | [job] control thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,523 | INFO     | [data] control thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:27,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 17:28:56] 2025-10-19 21:28:27,921 | INFO     | [job] job monitor thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:28,021 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:28,040 | INFO     | [data] copytool_out thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:28,071 | INFO     | [job] validate thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:28,479 | INFO     | [payload] validate_post thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:31,737 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 17:28:56] 2025-10-19 21:28:48,712 | INFO     | [monitor] cgroup control has ended
[2025-10-19 17:28:56] 2025-10-19 21:28:48,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140527488010048)>', '<ExcThread(monitor, started 140526791665408)>']
[2025-10-19 17:28:56] 2025-10-19 21:28:53,927 | INFO     | all workflow threads have been joined
[2025-10-19 17:28:56] 2025-10-19 21:28:53,927 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 17:28:56] 2025-10-19 21:28:53,939 | INFO     | traces error code: 0
[2025-10-19 17:28:56] 2025-10-19 21:28:53,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 17:28:56] 2025-10-19 21:28:55,935 | INFO     | PID=25156 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-19 17:28:56] 2025-10-19 21:28:55,936 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 17:28:56] 2025-10-19 21:28:55,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 17:28:56] 2025-10-19 21:28:55,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 17:28:56] 2025-10-19 21:28:55,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 17:28:56] 2025-10-19 21:28:55,936 | INFO     | [monitor] control thread has ended
[2025-10-19 17:28:56] 2025-10-19 21:28:56,027 [wrapper] ==== pilot stdout END ====
[2025-10-19 17:28:56] 2025-10-19 21:28:56,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 17:28:56] 2025-10-19 21:28:56,034 [wrapper] pilotpid: 25156
[2025-10-19 17:28:56] 2025-10-19 21:28:56,038 [wrapper] Pilot exit status: 0
[2025-10-19 17:28:56] 2025-10-19 21:28:56,051 [wrapper] pandaids: 6851800355
[2025-10-19 17:28:56] 2025-10-19 21:28:56,090 [wrapper] cleanup supervisor_pilot 28048 25157
[2025-10-19 17:28:56] 2025-10-19 21:28:56,093 [wrapper] Test setup, not cleaning
[2025-10-19 17:28:56] 2025-10-19 21:28:56,097 [wrapper] apfmon messages muted
[2025-10-19 17:28:56] 2025-10-19 21:28:56,101 [wrapper] ==== wrapper stdout END ====
[2025-10-19 17:28:56] 2025-10-19 21:28:56,104 [wrapper] ==== wrapper stderr END ====
[2025-10-19 17:28:56]  *** Error codes and diagnostics ***
[2025-10-19 17:28:56]     "exeErrorCode": 0,
[2025-10-19 17:28:56]     "exeErrorDiag": "",
[2025-10-19 17:28:56]     "pilotErrorCode": 0,
[2025-10-19 17:28:56]     "pilotErrorDiag": "",
[2025-10-19 17:28:56]  *** Listing of results directory ***
[2025-10-19 17:28:56] total 338968
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas    557409 Oct 19 15:25 pilot3.tar.gz
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas      5112 Oct 19 16:30 queuedata.json
[2025-10-19 17:28:56] -rwx------ 1 boincer umatlas     36292 Oct 19 16:30 runpilot2-wrapper.sh
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas       100 Oct 19 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 17:28:56] -rwxr-xr-x 1 boincer umatlas      7986 Oct 19 16:31 run_atlas
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas       105 Oct 19 16:31 job.xml
[2025-10-19 17:28:56] -rw-r--r-- 2 boincer umatlas 193148736 Oct 19 16:31 EVNT.46809186._000121.pool.root.1
[2025-10-19 17:28:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 19 16:31 start_atlas.sh
[2025-10-19 17:28:56] drwxrwx--x 2 boincer umatlas      4096 Oct 19 16:31 shared
[2025-10-19 17:28:56] -rw-r--r-- 2 boincer umatlas    569672 Oct 19 16:31 input.tar.gz
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas         0 Oct 19 16:31 boinc_lockfile
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas      2491 Oct 19 16:31 pandaJob.out
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas    976742 Oct 19 16:31 agis_schedconf.cvmfs.json
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas   1560740 Oct 19 16:31 agis_ddmendpoints.agis.ALL.json
[2025-10-19 17:28:56] drwx------ 5 boincer umatlas      4096 Oct 19 16:31 pilot3
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas 148333412 Oct 19 17:27 HITS.46809188._003167.pool.root.1
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas      5953 Oct 19 17:27 init_data.xml
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas       529 Oct 19 17:27 boinc_task_state.xml
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas      1046 Oct 19 17:28 memory_monitor_summary.json
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas    358698 Oct 19 17:28 log.46809188._003167.job.log.tgz.1
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas      7848 Oct 19 17:28 heartbeat.json
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas        27 Oct 19 17:28 wrapper_checkpoint.txt
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas      8192 Oct 19 17:28 boinc_mmap_file
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas       745 Oct 19 17:28 pilotlog.txt
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas        95 Oct 19 17:28 pilot_heartbeat.json
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas    506980 Oct 19 17:28 log.46809188._003167.job.log.1
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas       357 Oct 19 17:28 output.list
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas       620 Oct 19 17:28 runtime_log
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas    880640 Oct 19 17:28 result.tar.gz
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas       659 Oct 19 17:28 xhLKDmQEpU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmk6cMDmUOie4m.diag
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas      8705 Oct 19 17:28 runtime_log.err
[2025-10-19 17:28:56] -rw-r--r-- 1 boincer umatlas     22220 Oct 19 17:28 stderr.txt
[2025-10-19 17:28:56] HITS file was successfully produced:
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas 148333412 Oct 19 17:27 shared/HITS.pool.root.1
[2025-10-19 17:28:56]  *** Contents of shared directory: ***
[2025-10-19 17:28:56] total 334920
[2025-10-19 17:28:56] -rw-r--r-- 2 boincer umatlas 193148736 Oct 19 16:31 ATLAS.root_0
[2025-10-19 17:28:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 19 16:31 start_atlas.sh
[2025-10-19 17:28:56] -rw-r--r-- 2 boincer umatlas    569672 Oct 19 16:31 input.tar.gz
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas 148333412 Oct 19 17:27 HITS.pool.root.1
[2025-10-19 17:28:56] -rw------- 1 boincer umatlas    880640 Oct 19 17:28 result.tar.gz
17:28:57 (21470): run_atlas exited; CPU time 35872.821562
17:28:57 (21470): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN