Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:31:56 (1261245): wrapper (7.7.26015): starting
10:31:56 (1261245): wrapper: running run_atlas (--nthreads 10)
[2025-10-19 10:31:56] Arguments: --nthreads 10
[2025-10-19 10:31:56] Threads: 10
[2025-10-19 10:31:56] Checking for CVMFS
[2025-10-19 10:31:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 10:31:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 10:31:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 10:31:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 10:31:56] 2.13.2.0 3310087 28876 222448 151890 1 31 39264718 40960001 14036 16776704 0 64294614 99.787 36069476 41002 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-19 10:31:56] CVMFS is ok
[2025-10-19 10:31:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 10:31:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 10:31:56] Further information can be found at the LHC@home message board.
[2025-10-19 10:31:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 10:31:56] Checking for apptainer binary...
[2025-10-19 10:31:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 10:31:56] Running /usr/bin/apptainer --version
[2025-10-19 10:31:56] apptainer version 1.4.3-1.el9
[2025-10-19 10:31:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 10:31:57] c-206-38.aglt2.org
[2025-10-19 10:31:57] apptainer works
[2025-10-19 10:31:57] Set ATHENA_PROC_NUMBER=10
[2025-10-19 10:31:57] Set ATHENA_CORE_NUMBER=10
[2025-10-19 10:31:57] Starting ATLAS job with PandaID=6846783251
[2025-10-19 10:31:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 12:39:28]  *** The last 200 lines of the pilot log: ***
[2025-10-19 12:39:28] 2025-10-19 16:38:20,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 12:39:28] 2025-10-19 16:38:20,599 | INFO     | fitting pss+swap vs Time
[2025-10-19 12:39:28] 2025-10-19 16:38:20,599 | INFO     | sum of square deviations: 591205637.9677436
[2025-10-19 12:39:28] 2025-10-19 16:38:20,600 | INFO     | sum of deviations: 4063924121.048397
[2025-10-19 12:39:28] 2025-10-19 16:38:20,600 | INFO     | mean x: 1760888104.983871
[2025-10-19 12:39:28] 2025-10-19 16:38:20,600 | INFO     | mean y: 2578130.5241935486
[2025-10-19 12:39:28] 2025-10-19 16:38:20,600 | INFO     | -- intersect: -12101696904.656706
[2025-10-19 12:39:28] 2025-10-19 16:38:20,600 | INFO     | intersect: -12101696904.656706
[2025-10-19 12:39:28] 2025-10-19 16:38:20,600 | INFO     | chi2: 1.967211623214968
[2025-10-19 12:39:28] 2025-10-19 16:38:20,601 | INFO     | sum of square deviations: 522537753.7310928
[2025-10-19 12:39:28] 2025-10-19 16:38:20,601 | INFO     | sum of deviations: 11981852486.630247
[2025-10-19 12:39:28] 2025-10-19 16:38:20,601 | INFO     | mean x: 1760887952.487395
[2025-10-19 12:39:28] 2025-10-19 16:38:20,601 | INFO     | mean y: 2595132.4201680673
[2025-10-19 12:39:28] 2025-10-19 16:38:20,601 | INFO     | -- intersect: -40374773854.86664
[2025-10-19 12:39:28] 2025-10-19 16:38:20,601 | INFO     | intersect: -40374773854.86664
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | chi2: 1.2711098898118216
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | current chi2=1.2711098898118216 (change=35.385198277017274 %)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | sum of square deviations: 459419374.9912284
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | sum of deviations: 11745344298.280697
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | mean x: 1760887800.008772
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | mean y: 2594560.7192982454
[2025-10-19 12:39:28] 2025-10-19 16:38:20,602 | INFO     | -- intersect: -45015605819.140495
[2025-10-19 12:39:28] 2025-10-19 16:38:20,603 | INFO     | intersect: -45015605819.140495
[2025-10-19 12:39:28] 2025-10-19 16:38:20,603 | INFO     | chi2: 1.272450631367391
[2025-10-19 12:39:28] 2025-10-19 16:38:20,603 | INFO     | current chi2=1.272450631367391 (change=-0.10547802092608834 %)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,603 | INFO     | right removable region: 113
[2025-10-19 12:39:28] 2025-10-19 16:38:20,603 | INFO     | sum of square deviations: 522516281.74789804
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | sum of deviations: -12920801851.092434
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | mean x: 1760888257.5042017
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | mean y: 2615186.1848739497
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | -- intersect: 43545924843.48006
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | intersect: 43545924843.48006
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | chi2: 0.7673563180686351
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | current chi2=0.7673563180686351 (change=60.99269092287272 %)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,604 | INFO     | sum of square deviations: 459361912.921052
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | sum of deviations: -14442780175.368423
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | mean x: 1760888410.0263157
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | mean y: 2618740.789473684
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | -- intersect: 55366643280.05287
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | intersect: 55366643280.05287
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | chi2: 0.7398941456902531
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | current chi2=0.7398941456902531 (change=3.578803188524172 %)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | left removable region: 20
[2025-10-19 12:39:28] 2025-10-19 16:38:20,605 | INFO     | sum of square deviations: 249380356.06451574
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | sum of deviations: -4964829431.870969
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | mean x: 1760888379.612903
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | mean y: 2637959.8924731184
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | -- intersect: 35059571037.1714
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | intersect: 35059571037.1714
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | chi2: 0.018583261340090793
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | -- intersect: 35059571037.1714
[2025-10-19 12:39:28] 2025-10-19 16:38:20,606 | INFO     | current memory leak: -19.91 B/s (using 93 data points, chi2=0.02)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | could have reported an average CPU frequency of 3279 MHz (8 samples)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | ..............................
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . Timing measurements:
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . get job = 0 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . initial setup = 2 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . payload setup = 5 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . stage-in = 0 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . payload execution = 7527 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . stage-out = 0 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,607 | INFO     | . log creation = 0 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,608 | INFO     | ..............................
[2025-10-19 12:39:28] 2025-10-19 16:38:20,963 | INFO     | 
[2025-10-19 12:39:28] 2025-10-19 16:38:20,967 | INFO     | job summary report
[2025-10-19 12:39:28] 2025-10-19 16:38:20,967 | INFO     | --------------------------------------------------
[2025-10-19 12:39:28] 2025-10-19 16:38:20,967 | INFO     | PanDA job id: 6846783251
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | task id: 46771637
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | errors: (none)
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | pilot state: finished 
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | transexitcode: 0
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | exeerrorcode: 0
[2025-10-19 12:39:28] 2025-10-19 16:38:20,968 | INFO     | exeerrordiag: 
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | exitcode: 0
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | exitmsg: OK
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | cpuconsumptiontime: 35444 s
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | nevents: 400
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | neventsw: 0
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | pid: 1291486
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | pgrp: 1291486
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | corecount: 10
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | event service: False
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | sizes: {0: 2348694, 1: 2348949, 5: 2349211, 11: 2349267, 7537: 2377093, 7538: 2386091, 7540: 2386275, 7559: 2386469}
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | --------------------------------------------------
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | 
[2025-10-19 12:39:28] 2025-10-19 16:38:20,969 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-19 12:39:28] 2025-10-19 16:38:21,013 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,013 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,013 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,013 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 12:39:28] 2025-10-19 16:38:21,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 12:39:28] 2025-10-19 16:38:21,015 | INFO     | job 6846783251 has completed (purged errors)
[2025-10-19 12:39:28] 2025-10-19 16:38:21,015 | INFO     | overall cleanup function is called
[2025-10-19 12:39:28] 2025-10-19 16:38:22,023 | INFO     | --- collectZombieJob: --- 10, [1291486]
[2025-10-19 12:39:28] 2025-10-19 16:38:22,026 | INFO     | zombie collector waiting for pid 1291486
[2025-10-19 12:39:28] 2025-10-19 16:38:22,027 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 12:39:28] 2025-10-19 16:38:22,027 | INFO     | collected zombie processes
[2025-10-19 12:39:28] 2025-10-19 16:38:22,027 | INFO     | will attempt to kill all subprocesses of pid=1291486
[2025-10-19 12:39:28] 2025-10-19 16:38:22,396 | INFO     | process IDs to be killed: [1291486] (in reverse order)
[2025-10-19 12:39:28] 2025-10-19 16:38:22,569 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 12:39:28] 2025-10-19 16:38:22,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 12:39:28] 2025-10-19 16:38:22,680 | INFO     | did not find any defunct processes belonging to 1291486
[2025-10-19 12:39:28] 2025-10-19 16:38:22,703 | INFO     | did not find any defunct processes belonging to 1291486
[2025-10-19 12:39:28] 2025-10-19 16:38:22,703 | INFO     | ready for new job
[2025-10-19 12:39:28] 2025-10-19 16:38:22,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 12:39:28] 2025-10-19 16:38:22,705 | INFO     | ***************************************
[2025-10-19 12:39:28] 2025-10-19 16:38:22,705 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 12:39:28] 2025-10-19 16:38:22,705 | INFO     | ***************************************
[2025-10-19 12:39:28] 2025-10-19 16:38:22,705 | INFO     | 
[2025-10-19 12:39:28] 2025-10-19 16:38:22,711 | INFO     | architecture information:
[2025-10-19 12:39:28] 2025-10-19 16:38:22,715 | INFO     | executing command: cat /etc/os-release
[2025-10-19 12:39:28] 2025-10-19 16:38:22,820 | INFO     | cat /etc/os-release:
[2025-10-19 12:39:28] NAME="CentOS Linux"
[2025-10-19 12:39:28] VERSION="7 (Core)"
[2025-10-19 12:39:28] ID="centos"
[2025-10-19 12:39:28] ID_LIKE="rhel fedora"
[2025-10-19 12:39:28] VERSION_ID="7"
[2025-10-19 12:39:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 12:39:28] ANSI_COLOR="0;31"
[2025-10-19 12:39:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 12:39:28] HOME_URL="https://www.centos.org/"
[2025-10-19 12:39:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 12:39:28] 
[2025-10-19 12:39:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 12:39:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 12:39:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 12:39:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 12:39:28] 
[2025-10-19 12:39:28] 2025-10-19 16:38:22,820 | INFO     | ***************************************
[2025-10-19 12:39:28] 2025-10-19 16:38:23,323 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-19 12:39:28] 2025-10-19 16:38:23,450 | INFO     | sufficient remaining disk space (85266006016 B)
[2025-10-19 12:39:28] 2025-10-19 16:38:23,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 12:39:28] 2025-10-19 16:38:23,451 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 12:39:28] 2025-10-19 16:38:23,451 | INFO     | update_server=False
[2025-10-19 12:39:28] 2025-10-19 16:38:23,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 12:39:28] 2025-10-19 16:38:23,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 12:39:28] 2025-10-19 16:38:23,705 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-19 12:39:28] 2025-10-19 16:38:23,705 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-19 12:39:28] 2025-10-19 16:38:23,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 12:39:28] 2025-10-19 16:38:23,705 | INFO     | will abort loop
[2025-10-19 12:39:28] 2025-10-19 16:38:23,897 | INFO     | all job control threads have been joined
[2025-10-19 12:39:28] 2025-10-19 16:38:24,359 | INFO     | all data control threads have been joined
[2025-10-19 12:39:28] 2025-10-19 16:38:24,457 | INFO     | [job] retrieve thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:24,713 | INFO     | [job] job monitor thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:24,773 | INFO     | [job] validate thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:24,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:24,785 | INFO     | [payload] failed_post thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:24,860 | INFO     | all payload control threads have been joined
[2025-10-19 12:39:28] 2025-10-19 16:38:24,902 | INFO     | [job] control thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,365 | INFO     | [data] control thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,446 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,459 | INFO     | [data] copytool_out thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,705 | INFO     | [data] copytool_in thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 12:39:28] 2025-10-19 16:38:25,847 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,866 | INFO     | [payload] control thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,869 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:25,989 | INFO     | [payload] validate_post thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:26,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 12:39:28] 2025-10-19 16:38:26,744 | INFO     | [job] queue monitor thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:30,213 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 12:39:28] 2025-10-19 16:38:54,188 | INFO     | PID=1271765 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 12:39:28] 2025-10-19 16:38:54,188 | INFO     | .. there are 17 such processes running
[2025-10-19 12:39:28] 2025-10-19 16:38:54,189 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 12:39:28] 2025-10-19 16:38:54,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 12:39:28] 2025-10-19 16:38:54,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 12:39:28] 2025-10-19 16:39:20,254 | INFO     | [monitor] cgroup control has ended
[2025-10-19 12:39:28] 2025-10-19 16:39:22,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735211214656)>', '<ExcThread(monitor, started 139734714136320)>']
[2025-10-19 12:39:28] 2025-10-19 16:39:22,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 12:39:28] 2025-10-19 16:39:22,397 | INFO     | [monitor] control thread has ended
[2025-10-19 12:39:28] 2025-10-19 16:39:27,387 | INFO     | all workflow threads have been joined
[2025-10-19 12:39:28] 2025-10-19 16:39:27,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 12:39:28] 2025-10-19 16:39:27,387 | INFO     | traces error code: 0
[2025-10-19 12:39:28] 2025-10-19 16:39:27,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 12:39:28] 2025-10-19 16:39:27,697 [wrapper] ==== pilot stdout END ====
[2025-10-19 12:39:28] 2025-10-19 16:39:27,701 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 12:39:28] 2025-10-19 16:39:27,711 [wrapper] pilotpid: 1271765
[2025-10-19 12:39:28] 2025-10-19 16:39:27,722 [wrapper] Pilot exit status: 0
[2025-10-19 12:39:28] 2025-10-19 16:39:27,747 [wrapper] pandaids: 6846783251
[2025-10-19 12:39:28] 2025-10-19 16:39:27,822 [wrapper] cleanup supervisor_pilot 1515017 1271766
[2025-10-19 12:39:28] 2025-10-19 16:39:27,827 [wrapper] Test setup, not cleaning
[2025-10-19 12:39:28] 2025-10-19 16:39:27,883 [wrapper] apfmon messages muted
[2025-10-19 12:39:28] 2025-10-19 16:39:27,906 [wrapper] ==== wrapper stdout END ====
[2025-10-19 12:39:28] 2025-10-19 16:39:27,921 [wrapper] ==== wrapper stderr END ====
[2025-10-19 12:39:28]  *** Error codes and diagnostics ***
[2025-10-19 12:39:28]     "exeErrorCode": 0,
[2025-10-19 12:39:28]     "exeErrorDiag": "",
[2025-10-19 12:39:28]     "pilotErrorCode": 0,
[2025-10-19 12:39:28]     "pilotErrorDiag": "",
[2025-10-19 12:39:28]  *** Listing of results directory ***
[2025-10-19 12:39:28] total 421408
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas    557409 Oct 15 21:30 pilot3.tar.gz
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas      5112 Oct 15 21:56 queuedata.json
[2025-10-19 12:39:28] -rwx------. 1 boincer umatlas     36292 Oct 15 21:57 runpilot2-wrapper.sh
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas       100 Oct 19 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 12:39:28] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 19 10:31 run_atlas
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas       105 Oct 19 10:31 job.xml
[2025-10-19 12:39:28] -rw-r--r--. 2 boincer umatlas 226570309 Oct 19 10:31 EVNT.46771634._000315.pool.root.1
[2025-10-19 12:39:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 19 10:31 start_atlas.sh
[2025-10-19 12:39:28] drwxrwx--x. 2 boincer umatlas      4096 Oct 19 10:31 shared
[2025-10-19 12:39:28] -rw-r--r--. 2 boincer umatlas    569674 Oct 19 10:31 input.tar.gz
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas         0 Oct 19 10:31 boinc_lockfile
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas      2553 Oct 19 10:31 pandaJob.out
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas    976750 Oct 19 10:32 agis_schedconf.cvmfs.json
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas   1560740 Oct 19 10:32 agis_ddmendpoints.agis.ALL.json
[2025-10-19 12:39:28] drwx------. 5 boincer umatlas      4096 Oct 19 10:32 pilot3
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas      6899 Oct 19 12:36 init_data.xml
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas 198113214 Oct 19 12:37 HITS.46771637._007120.pool.root.1
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas       529 Oct 19 12:37 boinc_task_state.xml
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas      1042 Oct 19 12:37 memory_monitor_summary.json
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas    410594 Oct 19 12:37 log.46771637._007120.job.log.tgz.1
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas        95 Oct 19 12:38 pilot_heartbeat.json
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas      7772 Oct 19 12:38 heartbeat.json
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas      8192 Oct 19 12:39 boinc_mmap_file
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas        27 Oct 19 12:39 wrapper_checkpoint.txt
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas      5010 Oct 19 12:39 pilotlog.txt
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas   1053834 Oct 19 12:39 log.46771637._007120.job.log.1
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas       357 Oct 19 12:39 output.list
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas       620 Oct 19 12:39 runtime_log
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas   1484800 Oct 19 12:39 result.tar.gz
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas      8705 Oct 19 12:39 runtime_log.err
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas       652 Oct 19 12:39 cr6KDmvPST8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlLXMDmfeZfOn.diag
[2025-10-19 12:39:28] -rw-r--r--. 1 boincer umatlas     21012 Oct 19 12:39 stderr.txt
[2025-10-19 12:39:28] HITS file was successfully produced:
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas 198113214 Oct 19 12:37 shared/HITS.pool.root.1
[2025-10-19 12:39:28]  *** Contents of shared directory: ***
[2025-10-19 12:39:28] total 416768
[2025-10-19 12:39:28] -rw-r--r--. 2 boincer umatlas 226570309 Oct 19 10:31 ATLAS.root_0
[2025-10-19 12:39:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 19 10:31 start_atlas.sh
[2025-10-19 12:39:28] -rw-r--r--. 2 boincer umatlas    569674 Oct 19 10:31 input.tar.gz
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas 198113214 Oct 19 12:37 HITS.pool.root.1
[2025-10-19 12:39:28] -rw-------. 1 boincer umatlas   1484800 Oct 19 12:39 result.tar.gz
12:39:30 (1261245): run_atlas exited; CPU time 35478.026892
12:39:30 (1261245): called boinc_finish(0)

</stderr_txt>
]]>

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