Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:26:42 (2566925): wrapper (7.7.26015): starting
15:26:42 (2566925): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 15:26:42] Arguments: --nthreads 4
[2025-10-19 15:26:42] Threads: 4
[2025-10-19 15:26:42] Checking for CVMFS
[2025-10-19 15:26:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 15:26:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 15:26:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 15:26:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 15:26:44] 2.9.2.0 2567128 0 30028 151888 4 1 35498847 36864001 0 130560 0 0 0.000 1291 13447 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 15:26:44] CVMFS is ok
[2025-10-19 15:26:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 15:26:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 15:26:44] Further information can be found at the LHC@home message board.
[2025-10-19 15:26:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 15:26:44] Checking for apptainer binary...
[2025-10-19 15:26:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 15:26:44] Running /usr/bin/apptainer --version
[2025-10-19 15:26:44] apptainer version 1.4.1-1.1
[2025-10-19 15:26:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 15:26:44] atlasA237
[2025-10-19 15:26:44] apptainer works
[2025-10-19 15:26:44] Set ATHENA_PROC_NUMBER=4
[2025-10-19 15:26:44] Set ATHENA_CORE_NUMBER=4
[2025-10-19 15:26:44] Starting ATLAS job with PandaID=6837732216
[2025-10-19 15:26:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 16:40:22]  *** The last 200 lines of the pilot log: ***
[2025-10-19 16:40:22] 2025-10-19 14:39:50,995 | INFO     | zombie collector waiting for pid 2577953
[2025-10-19 16:40:22] 2025-10-19 14:39:50,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 16:40:22] 2025-10-19 14:39:50,995 | INFO     | collected zombie processes
[2025-10-19 16:40:22] 2025-10-19 14:39:50,995 | INFO     | will attempt to kill all subprocesses of pid=2577953
[2025-10-19 16:40:22] 2025-10-19 14:39:51,070 | INFO     | process IDs to be killed: [2577953] (in reverse order)
[2025-10-19 16:40:22] 2025-10-19 14:39:51,111 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 16:40:22] 2025-10-19 14:39:51,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 16:40:22] 2025-10-19 14:39:51,114 | INFO     | did not find any defunct processes belonging to 2577953
[2025-10-19 16:40:22] 2025-10-19 14:39:51,117 | INFO     | did not find any defunct processes belonging to 2577953
[2025-10-19 16:40:22] 2025-10-19 14:39:51,117 | INFO     | ready for new job
[2025-10-19 16:40:22] 2025-10-19 14:39:51,117 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 16:40:22] 2025-10-19 14:39:51,118 | INFO     | ***************************************
[2025-10-19 16:40:22] 2025-10-19 14:39:51,118 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 16:40:22] 2025-10-19 14:39:51,118 | INFO     | ***************************************
[2025-10-19 16:40:22] 2025-10-19 14:39:51,118 | INFO     | 
[2025-10-19 16:40:22] 2025-10-19 14:39:51,118 | INFO     | architecture information:
[2025-10-19 16:40:22] 2025-10-19 14:39:51,119 | INFO     | executing command: cat /etc/os-release
[2025-10-19 16:40:22] 2025-10-19 14:39:51,132 | INFO     | cat /etc/os-release:
[2025-10-19 16:40:22] NAME="CentOS Linux"
[2025-10-19 16:40:22] VERSION="7 (Core)"
[2025-10-19 16:40:22] ID="centos"
[2025-10-19 16:40:22] ID_LIKE="rhel fedora"
[2025-10-19 16:40:22] VERSION_ID="7"
[2025-10-19 16:40:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 16:40:22] ANSI_COLOR="0;31"
[2025-10-19 16:40:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 16:40:22] HOME_URL="https://www.centos.org/"
[2025-10-19 16:40:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 16:40:22] 
[2025-10-19 16:40:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 16:40:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 16:40:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 16:40:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 16:40:22] 
[2025-10-19 16:40:22] 2025-10-19 14:39:51,132 | INFO     | ***************************************
[2025-10-19 16:40:22] 2025-10-19 14:39:51,635 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | INFO     | sufficient remaining disk space (325722308608 B)
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | INFO     | update_server=False
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 16:40:22] 2025-10-19 14:39:51,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 16:40:22] 2025-10-19 14:39:51,652 | INFO     | aborting loop
[2025-10-19 16:40:22] 2025-10-19 14:39:51,726 | INFO     | all job control threads have been joined
[2025-10-19 16:40:22] 2025-10-19 14:39:52,191 | INFO     | all payload control threads have been joined
[2025-10-19 16:40:22] 2025-10-19 14:39:52,534 | INFO     | all data control threads have been joined
[2025-10-19 16:40:22] 2025-10-19 14:39:52,657 | INFO     | [job] retrieve thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:52,657 | INFO     | [job] queue monitor thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:52,657 | INFO     | [job] job monitor thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:52,731 | INFO     | [job] control thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 16:40:22] 2025-10-19 14:39:53,116 | INFO     | [payload] validate_post thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,196 | INFO     | [payload] control thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,540 | INFO     | [data] control thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,596 | INFO     | [job] validate thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,680 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,723 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,801 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:53,952 | INFO     | [data] copytool_in thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:54,128 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:54,221 | INFO     | [payload] failed_post thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:54,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 16:40:22] 2025-10-19 14:39:55,115 | INFO     | [data] copytool_out thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:58,543 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 16:40:22] 2025-10-19 14:39:59,666 | INFO     | [monitor] cgroup control has ended
[2025-10-19 16:40:22] 2025-10-19 14:40:01,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624885847872)>', '<ExcThread(monitor, started 140623671719680)>']
[2025-10-19 16:40:22] 2025-10-19 14:40:06,073 | INFO     | all workflow threads have been joined
[2025-10-19 16:40:22] 2025-10-19 14:40:06,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 16:40:22] 2025-10-19 14:40:06,074 | INFO     | traces error code: 0
[2025-10-19 16:40:22] 2025-10-19 14:40:06,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 16:40:22] 2025-10-19 14:40:22,686 | INFO     | PID=2571326 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 16:40:22] 2025-10-19 14:40:22,687 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 16:40:22] 2025-10-19 14:40:22,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 16:40:22] 2025-10-19 14:40:22,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 16:40:22] 2025-10-19 14:40:22,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 16:40:22] 2025-10-19 14:40:22,687 | INFO     | [monitor] control thread has ended
[2025-10-19 16:40:22] 2025-10-19 14:40:22,754 [wrapper] ==== pilot stdout END ====
[2025-10-19 16:40:22] 2025-10-19 14:40:22,758 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 16:40:22] 2025-10-19 14:40:22,762 [wrapper] pilotpid: 2571326
[2025-10-19 16:40:22] 2025-10-19 14:40:22,766 [wrapper] Pilot exit status: 0
[2025-10-19 16:40:22] 2025-10-19 14:40:22,776 [wrapper] pandaids: 6837732216
[2025-10-19 16:40:22] 2025-10-19 14:40:22,803 [wrapper] cleanup supervisor_pilot 2596804 2571327
[2025-10-19 16:40:22] 2025-10-19 14:40:22,806 [wrapper] Test setup, not cleaning
[2025-10-19 16:40:22] 2025-10-19 14:40:22,809 [wrapper] apfmon messages muted
[2025-10-19 16:40:22] 2025-10-19 14:40:22,813 [wrapper] ==== wrapper stdout END ====
[2025-10-19 16:40:22] 2025-10-19 14:40:22,816 [wrapper] ==== wrapper stderr END ====
[2025-10-19 16:40:22]  *** Error codes and diagnostics ***
[2025-10-19 16:40:22]     "exeErrorCode": 0,
[2025-10-19 16:40:22]     "exeErrorDiag": "",
[2025-10-19 16:40:22]     "pilotErrorCode": 0,
[2025-10-19 16:40:22]     "pilotErrorDiag": "",
[2025-10-19 16:40:22]  *** Listing of results directory ***
[2025-10-19 16:40:22] total 414176
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc    557409 Oct 10 22:08 pilot3.tar.gz
[2025-10-19 16:40:22] -rwx------ 1 boinc boinc     36292 Oct 10 22:09 runpilot2-wrapper.sh
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc      5112 Oct 10 22:09 queuedata.json
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc       100 Oct 19 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 16:40:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 15:26 run_atlas
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc       105 Oct 19 15:26 job.xml
[2025-10-19 16:40:22] -rw-r--r-- 2 boinc boinc 221372268 Oct 19 15:26 EVNT.46676267._001799.pool.root.1
[2025-10-19 16:40:22] -rw-r--r-- 2 boinc boinc    569671 Oct 19 15:26 input.tar.gz
[2025-10-19 16:40:22] -rw-r--r-- 2 boinc boinc     15120 Oct 19 15:26 start_atlas.sh
[2025-10-19 16:40:22] drwxrwx--x 2 boinc boinc      4096 Oct 19 15:26 shared
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc         0 Oct 19 15:26 boinc_setup_complete
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc      6370 Oct 19 15:26 init_data.xml
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc         0 Oct 19 15:26 boinc_lockfile
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc      2549 Oct 19 15:26 pandaJob.out
[2025-10-19 16:40:22] -rw------- 1 boinc boinc    976750 Oct 19 15:26 agis_schedconf.cvmfs.json
[2025-10-19 16:40:22] -rw------- 1 boinc boinc   1560740 Oct 19 15:26 agis_ddmendpoints.agis.ALL.json
[2025-10-19 16:40:22] drwx------ 5 boinc boinc      4096 Oct 19 15:26 pilot3
[2025-10-19 16:40:22] -rw------- 1 boinc boinc 197007218 Oct 19 16:39 HITS.46676269._044468.pool.root.1
[2025-10-19 16:40:22] -rw------- 1 boinc boinc        95 Oct 19 16:39 pilot_heartbeat.json
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc       530 Oct 19 16:39 boinc_task_state.xml
[2025-10-19 16:40:22] -rw------- 1 boinc boinc      1020 Oct 19 16:39 memory_monitor_summary.json
[2025-10-19 16:40:22] -rw------- 1 boinc boinc    277380 Oct 19 16:39 log.46676269._044468.job.log.tgz.1
[2025-10-19 16:40:22] -rw------- 1 boinc boinc      7771 Oct 19 16:39 heartbeat.json
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc      8192 Oct 19 16:39 boinc_mmap_file
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc        27 Oct 19 16:39 wrapper_checkpoint.txt
[2025-10-19 16:40:22] -rw------- 1 boinc boinc       747 Oct 19 16:40 pilotlog.txt
[2025-10-19 16:40:22] -rw------- 1 boinc boinc    647244 Oct 19 16:40 log.46676269._044468.job.log.1
[2025-10-19 16:40:22] -rw------- 1 boinc boinc       357 Oct 19 16:40 output.list
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc       620 Oct 19 16:40 runtime_log
[2025-10-19 16:40:22] -rw------- 1 boinc boinc    942080 Oct 19 16:40 result.tar.gz
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc      8792 Oct 19 16:40 runtime_log.err
[2025-10-19 16:40:22] -rw------- 1 boinc boinc       661 Oct 19 16:40 p4GNDmXbYR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1KeNDm106ySo.diag
[2025-10-19 16:40:22] -rw-r--r-- 1 boinc boinc     10506 Oct 19 16:40 stderr.txt
[2025-10-19 16:40:22] HITS file was successfully produced:
[2025-10-19 16:40:22] -rw------- 1 boinc boinc 197007218 Oct 19 16:39 shared/HITS.pool.root.1
[2025-10-19 16:40:22]  *** Contents of shared directory: ***
[2025-10-19 16:40:22] total 410080
[2025-10-19 16:40:22] -rw-r--r-- 2 boinc boinc 221372268 Oct 19 15:26 ATLAS.root_0
[2025-10-19 16:40:22] -rw-r--r-- 2 boinc boinc    569671 Oct 19 15:26 input.tar.gz
[2025-10-19 16:40:22] -rw-r--r-- 2 boinc boinc     15120 Oct 19 15:26 start_atlas.sh
[2025-10-19 16:40:22] -rw------- 1 boinc boinc 197007218 Oct 19 16:39 HITS.pool.root.1
[2025-10-19 16:40:22] -rw------- 1 boinc boinc    942080 Oct 19 16:40 result.tar.gz
16:40:24 (2566925): run_atlas exited; CPU time 16550.891720
16:40:24 (2566925): called boinc_finish(0)

</stderr_txt>
]]>

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