Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:55:32 (806070): wrapper (7.7.26015): starting
17:55:32 (806070): wrapper: running run_atlas (--nthreads 3)
[2025-10-19 17:55:32] Arguments: --nthreads 3
[2025-10-19 17:55:32] Threads: 3
[2025-10-19 17:55:32] Checking for CVMFS
[2025-10-19 17:55:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 17:55:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 17:55:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 17:55:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 17:55:32] 2.9.2.0 193215 18961 89352 151892 2 57 5492317 36864000 12 130560 0 12612762 99.990 641174 1016 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 17:55:32] CVMFS is ok
[2025-10-19 17:55:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 17:55:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 17:55:32] Further information can be found at the LHC@home message board.
[2025-10-19 17:55:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 17:55:32] Checking for apptainer binary...
[2025-10-19 17:55:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 17:55:32] Running /usr/bin/apptainer --version
[2025-10-19 17:55:32] apptainer version 1.4.1-1.1
[2025-10-19 17:55:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 17:55:32] thA383
[2025-10-19 17:55:32] apptainer works
[2025-10-19 17:55:32] Set ATHENA_PROC_NUMBER=3
[2025-10-19 17:55:32] Set ATHENA_CORE_NUMBER=3
[2025-10-19 17:55:32] Starting ATLAS job with PandaID=6837785294
[2025-10-19 17:55:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 19:18:50]  *** The last 200 lines of the pilot log: ***
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | job 6837785294 has completed (purged errors)
[2025-10-19 19:18:50] 2025-10-19 17:18:11,485 | INFO     | overall cleanup function is called
[2025-10-19 19:18:50] 2025-10-19 17:18:12,491 | INFO     | --- collectZombieJob: --- 10, [816225]
[2025-10-19 19:18:50] 2025-10-19 17:18:12,491 | INFO     | zombie collector waiting for pid 816225
[2025-10-19 19:18:50] 2025-10-19 17:18:12,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 19:18:50] 2025-10-19 17:18:12,492 | INFO     | collected zombie processes
[2025-10-19 19:18:50] 2025-10-19 17:18:12,492 | INFO     | will attempt to kill all subprocesses of pid=816225
[2025-10-19 19:18:50] 2025-10-19 17:18:12,535 | INFO     | process IDs to be killed: [816225] (in reverse order)
[2025-10-19 19:18:50] 2025-10-19 17:18:12,558 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 19:18:50] 2025-10-19 17:18:12,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 19:18:50] 2025-10-19 17:18:12,560 | INFO     | did not find any defunct processes belonging to 816225
[2025-10-19 19:18:50] 2025-10-19 17:18:12,561 | INFO     | did not find any defunct processes belonging to 816225
[2025-10-19 19:18:50] 2025-10-19 17:18:12,561 | INFO     | ready for new job
[2025-10-19 19:18:50] 2025-10-19 17:18:12,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 19:18:50] 2025-10-19 17:18:12,562 | INFO     | ***************************************
[2025-10-19 19:18:50] 2025-10-19 17:18:12,562 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 19:18:50] 2025-10-19 17:18:12,562 | INFO     | ***************************************
[2025-10-19 19:18:50] 2025-10-19 17:18:12,562 | INFO     | 
[2025-10-19 19:18:50] 2025-10-19 17:18:12,563 | INFO     | architecture information:
[2025-10-19 19:18:50] 2025-10-19 17:18:12,563 | INFO     | executing command: cat /etc/os-release
[2025-10-19 19:18:50] 2025-10-19 17:18:12,571 | INFO     | cat /etc/os-release:
[2025-10-19 19:18:50] NAME="CentOS Linux"
[2025-10-19 19:18:50] VERSION="7 (Core)"
[2025-10-19 19:18:50] ID="centos"
[2025-10-19 19:18:50] ID_LIKE="rhel fedora"
[2025-10-19 19:18:50] VERSION_ID="7"
[2025-10-19 19:18:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 19:18:50] ANSI_COLOR="0;31"
[2025-10-19 19:18:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 19:18:50] HOME_URL="https://www.centos.org/"
[2025-10-19 19:18:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 19:18:50] 
[2025-10-19 19:18:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 19:18:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 19:18:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 19:18:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 19:18:50] 
[2025-10-19 19:18:50] 2025-10-19 17:18:12,571 | INFO     | ***************************************
[2025-10-19 19:18:50] 2025-10-19 17:18:13,074 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 19:18:50] 2025-10-19 17:18:13,087 | INFO     | sufficient remaining disk space (256392560640 B)
[2025-10-19 19:18:50] 2025-10-19 17:18:13,087 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | INFO     | update_server=False
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 19:18:50] 2025-10-19 17:18:13,088 | INFO     | aborting loop
[2025-10-19 19:18:50] 2025-10-19 17:18:13,137 | INFO     | all payload control threads have been joined
[2025-10-19 19:18:50] 2025-10-19 17:18:13,362 | INFO     | all data control threads have been joined
[2025-10-19 19:18:50] 2025-10-19 17:18:14,093 | INFO     | [job] retrieve thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,093 | INFO     | [job] queue monitor thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,093 | INFO     | [job] job monitor thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,143 | INFO     | [payload] control thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,368 | INFO     | [data] control thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,379 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,471 | INFO     | all job control threads have been joined
[2025-10-19 19:18:50] 2025-10-19 17:18:14,485 | INFO     | [data] copytool_in thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:14,942 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,009 | INFO     | [payload] validate_post thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,087 | INFO     | [job] validate thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,094 | INFO     | [data] copytool_out thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,103 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,166 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,477 | INFO     | [job] control thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:15,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 19:18:50] 2025-10-19 17:18:15,689 | INFO     | [payload] failed_post thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:19,564 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 19:18:50] 2025-10-19 17:18:43,283 | INFO     | PID=809786 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-19 19:18:50] 2025-10-19 17:18:43,283 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 19:18:50] 2025-10-19 17:18:43,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 19:18:50] 2025-10-19 17:18:43,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 19:18:50] 2025-10-19 17:18:44,198 | INFO     | [monitor] cgroup control has ended
[2025-10-19 19:18:50] 2025-10-19 17:18:45,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961929447232)>', '<ExcThread(monitor, started 139961307232000)>']
[2025-10-19 19:18:50] 2025-10-19 17:18:46,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 19:18:50] 2025-10-19 17:18:46,300 | INFO     | [monitor] control thread has ended
[2025-10-19 19:18:50] 2025-10-19 17:18:50,539 | INFO     | all workflow threads have been joined
[2025-10-19 19:18:50] 2025-10-19 17:18:50,540 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 19:18:50] 2025-10-19 17:18:50,540 | INFO     | traces error code: 0
[2025-10-19 19:18:50] 2025-10-19 17:18:50,540 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 19:18:50] 2025-10-19 17:18:50,592 [wrapper] ==== pilot stdout END ====
[2025-10-19 19:18:50] 2025-10-19 17:18:50,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 19:18:50] 2025-10-19 17:18:50,597 [wrapper] pilotpid: 809786
[2025-10-19 19:18:50] 2025-10-19 17:18:50,599 [wrapper] Pilot exit status: 0
[2025-10-19 19:18:50] 2025-10-19 17:18:50,606 [wrapper] pandaids: 6837785294
[2025-10-19 19:18:50] 2025-10-19 17:18:50,622 [wrapper] cleanup supervisor_pilot  828002 809787
[2025-10-19 19:18:50] 2025-10-19 17:18:50,624 [wrapper] Test setup, not cleaning
[2025-10-19 19:18:50] 2025-10-19 17:18:50,627 [wrapper] apfmon messages muted
[2025-10-19 19:18:50] 2025-10-19 17:18:50,629 [wrapper] ==== wrapper stdout END ====
[2025-10-19 19:18:50] 2025-10-19 17:18:50,631 [wrapper] ==== wrapper stderr END ====
[2025-10-19 19:18:50]  *** Error codes and diagnostics ***
[2025-10-19 19:18:50]     "exeErrorCode": 0,
[2025-10-19 19:18:50]     "exeErrorDiag": "",
[2025-10-19 19:18:50]     "pilotErrorCode": 0,
[2025-10-19 19:18:50]     "pilotErrorDiag": "",
[2025-10-19 19:18:50]  *** Listing of results directory ***
[2025-10-19 19:18:50] total 409016
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc    557409 Oct 10 22:48 pilot3.tar.gz
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc      5112 Oct 10 22:53 queuedata.json
[2025-10-19 19:18:50] -rwx------ 1 boinc boinc     36292 Oct 10 22:54 runpilot2-wrapper.sh
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc       100 Oct 19 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 19:18:50] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 17:55 run_atlas
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc       105 Oct 19 17:55 job.xml
[2025-10-19 19:18:50] -rw-r--r-- 2 boinc boinc 220442589 Oct 19 17:55 EVNT.46676267._001825.pool.root.1
[2025-10-19 19:18:50] -rw-r--r-- 2 boinc boinc    569679 Oct 19 17:55 input.tar.gz
[2025-10-19 19:18:50] -rw-r--r-- 2 boinc boinc     15120 Oct 19 17:55 start_atlas.sh
[2025-10-19 19:18:50] drwxrwx--x 2 boinc boinc      4096 Oct 19 17:55 shared
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc         0 Oct 19 17:55 boinc_setup_complete
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc      6438 Oct 19 17:55 init_data.xml
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc         0 Oct 19 17:55 boinc_lockfile
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc      2550 Oct 19 17:55 pandaJob.out
[2025-10-19 19:18:50] -rw------- 1 boinc boinc    976742 Oct 19 17:55 agis_schedconf.cvmfs.json
[2025-10-19 19:18:50] -rw------- 1 boinc boinc   1560740 Oct 19 17:55 agis_ddmendpoints.agis.ALL.json
[2025-10-19 19:18:50] drwx------ 5 boinc boinc      4096 Oct 19 17:55 pilot3
[2025-10-19 19:18:50] -rw------- 1 boinc boinc 192525408 Oct 19 19:17 HITS.46676269._045125.pool.root.1
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc       530 Oct 19 19:17 boinc_task_state.xml
[2025-10-19 19:18:50] -rw------- 1 boinc boinc      1017 Oct 19 19:18 memory_monitor_summary.json
[2025-10-19 19:18:50] -rw------- 1 boinc boinc        95 Oct 19 19:18 pilot_heartbeat.json
[2025-10-19 19:18:50] -rw------- 1 boinc boinc    254197 Oct 19 19:18 log.46676269._045125.job.log.tgz.1
[2025-10-19 19:18:50] -rw------- 1 boinc boinc      7760 Oct 19 19:18 heartbeat.json
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc      8192 Oct 19 19:18 boinc_mmap_file
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc        27 Oct 19 19:18 wrapper_checkpoint.txt
[2025-10-19 19:18:50] -rw------- 1 boinc boinc      4751 Oct 19 19:18 pilotlog.txt
[2025-10-19 19:18:50] -rw------- 1 boinc boinc    727447 Oct 19 19:18 log.46676269._045125.job.log.1
[2025-10-19 19:18:50] -rw------- 1 boinc boinc       357 Oct 19 19:18 output.list
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc       620 Oct 19 19:18 runtime_log
[2025-10-19 19:18:50] -rw------- 1 boinc boinc   1003520 Oct 19 19:18 result.tar.gz
[2025-10-19 19:18:50] -rw------- 1 boinc boinc       658 Oct 19 19:18 uIaLDmVJZR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUReNDmBL1mTn.diag
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc      8777 Oct 19 19:18 runtime_log.err
[2025-10-19 19:18:50] -rw-r--r-- 1 boinc boinc     12730 Oct 19 19:18 stderr.txt
[2025-10-19 19:18:50] HITS file was successfully produced:
[2025-10-19 19:18:50] -rw------- 1 boinc boinc 192525408 Oct 19 19:17 shared/HITS.pool.root.1
[2025-10-19 19:18:50]  *** Contents of shared directory: ***
[2025-10-19 19:18:50] total 404856
[2025-10-19 19:18:50] -rw-r--r-- 2 boinc boinc 220442589 Oct 19 17:55 ATLAS.root_0
[2025-10-19 19:18:50] -rw-r--r-- 2 boinc boinc    569679 Oct 19 17:55 input.tar.gz
[2025-10-19 19:18:50] -rw-r--r-- 2 boinc boinc     15120 Oct 19 17:55 start_atlas.sh
[2025-10-19 19:18:50] -rw------- 1 boinc boinc 192525408 Oct 19 19:17 HITS.pool.root.1
[2025-10-19 19:18:50] -rw------- 1 boinc boinc   1003520 Oct 19 19:18 result.tar.gz
19:18:52 (806070): run_atlas exited; CPU time 14137.142480
19:18:52 (806070): called boinc_finish(0)

</stderr_txt>
]]>

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