Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:02:57 (1045630): wrapper (7.7.26015): starting
03:02:57 (1045630): wrapper: running run_atlas (--nthreads 10)
[2025-10-19 03:02:57] Arguments: --nthreads 10
[2025-10-19 03:02:57] Threads: 10
[2025-10-19 03:02:57] Checking for CVMFS
[2025-10-19 03:02:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 03:02:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 03:02:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 03:02:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 03:02:57] 2.13.2.0 681289 134780 175912 151878 2 331 34797817 40960000 15340 16776704 0 329461121 99.767 197681454 35269 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-19 03:02:57] CVMFS is ok
[2025-10-19 03:02:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 03:02:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 03:02:57] Further information can be found at the LHC@home message board.
[2025-10-19 03:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 03:02:57] Checking for apptainer binary...
[2025-10-19 03:02:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 03:02:57] Running /usr/bin/apptainer --version
[2025-10-19 03:02:57] apptainer version 1.4.3-1.el9
[2025-10-19 03:02:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 03:02:58] c-212-14.aglt2.org
[2025-10-19 03:02:58] apptainer works
[2025-10-19 03:02:58] Set ATHENA_PROC_NUMBER=10
[2025-10-19 03:02:58] Set ATHENA_CORE_NUMBER=10
[2025-10-19 03:02:58] Starting ATLAS job with PandaID=6837931960
[2025-10-19 03:02:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 03:56:21]  *** The last 200 lines of the pilot log: ***
[2025-10-19 03:56:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-19 03:56:21]  replicas=None
[2025-10-19 03:56:21]  scope=mc23_13p6TeV
[2025-10-19 03:56:21]  status=None
[2025-10-19 03:56:21]  status_code=0
[2025-10-19 03:56:21]  storage_token=
[2025-10-19 03:56:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837931960/log.46676269._048543.job.log.tgz.1
[2025-10-19 03:56:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/72/log.46676269._048543.job.log.tgz.1
[2025-10-19 03:56:21]  workdir=None
[2025-10-19 03:56:21] ]
[2025-10-19 03:56:21] 2025-10-19 07:55:44,340 | INFO     | transferring file log.46676269._048543.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837931960/log.46676269._048543.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-19 03:56:21] 2025-10-19 07:55:44,340 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837931960/log.46676269._048543.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._048543.job
[2025-10-19 03:56:21] 2025-10-19 07:55:44,361 | INFO     | adding to output.list: log.46676269._048543.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/72/log.46676269._048543.job.log.tg
[2025-10-19 03:56:21] 2025-10-19 07:55:44,362 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 03:56:21] 2025-10-19 07:55:44,362 | INFO     | summary of transferred files:
[2025-10-19 03:56:21] 2025-10-19 07:55:44,362 | INFO     |  -- lfn=log.46676269._048543.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 03:56:21] 2025-10-19 07:55:44,362 | INFO     | stage-out finished correctly
[2025-10-19 03:56:21] 2025-10-19 07:55:45,168 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 03:56:21] 2025-10-19 07:55:45,239 | INFO     | job 6837931960 has state=finished
[2025-10-19 03:56:21] 2025-10-19 07:55:45,240 | INFO     | preparing for final server update for job 6837931960 in state='finished'
[2025-10-19 03:56:21] 2025-10-19 07:55:45,241 | INFO     | this job has now completed (state=finished)
[2025-10-19 03:56:21] 2025-10-19 07:55:45,241 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 03:56:21] 2025-10-19 07:55:45,241 | INFO     | log transfer has been attempted: DONE
[2025-10-19 03:56:21] 2025-10-19 07:55:45,241 | INFO     | job 6837931960 has finished - writing final server update
[2025-10-19 03:56:21] 2025-10-19 07:55:45,241 | INFO     | total number of processed events: 400 (read)
[2025-10-19 03:56:21] 2025-10-19 07:55:45,242 | INFO     | executing command: lscpu
[2025-10-19 03:56:21] 2025-10-19 07:55:45,306 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 03:56:21] 2025-10-19 07:55:45,489 | WARNING  | process 1055831 can no longer be monitored (due to stat problems) - aborting
[2025-10-19 03:56:21] 2025-10-19 07:55:45,489 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837931960/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 03:56:21] 2025-10-19 07:55:45,588 | INFO     | time since job start (3159s) is within the limit (172800.0s)
[2025-10-19 03:56:21] 2025-10-19 07:55:45,795 | INFO     | number of running child processes to parent process 1055831: 1
[2025-10-19 03:56:21] 2025-10-19 07:55:45,795 | INFO     | maximum number of monitored processes: 6
[2025-10-19 03:56:21] 2025-10-19 07:55:47,594 | INFO     | time since job start (3161s) is within the limit (172800.0s)
[2025-10-19 03:56:21] 2025-10-19 07:55:48,298 | INFO     | monitor loop #235: job 0:6837931960 is in state 'finished'
[2025-10-19 03:56:21] 2025-10-19 07:55:48,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 03:56:21] 2025-10-19 07:55:48,864 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 03:56:21] 2025-10-19 07:55:48,869 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3086.7891875000005
[2025-10-19 03:56:21] 2025-10-19 07:55:48,881 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837931960/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 03:56:21] 2025-10-19 07:55:48,881 | INFO     | extracted standard info from prmon json
[2025-10-19 03:56:21] 2025-10-19 07:55:48,882 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 03:56:21] 2025-10-19 07:55:48,882 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 03:56:21] 2025-10-19 07:55:48,882 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 03:56:21] 2025-10-19 07:55:48,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 03:56:21] 2025-10-19 07:55:48,883 | INFO     | fitting pss+swap vs Time
[2025-10-19 03:56:21] 2025-10-19 07:55:48,883 | INFO     | sum of square deviations: 28242390.0
[2025-10-19 03:56:21] 2025-10-19 07:55:48,883 | INFO     | sum of deviations: -3619546629.9999995
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | mean x: 1760859055.0
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | mean y: 2720494.5555555555
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | -- intersect: 225674537165.53253
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | intersect: 225674537165.53253
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | chi2: 0.07852201395913062
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | -- intersect: 225674537165.53253
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | current memory leak: -128.16 B/s (using 45 data points, chi2=0.08)
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | could have reported an average CPU frequency of 3075 MHz (5 samples)
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | ..............................
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | . Timing measurements:
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | . get job = 0 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | . initial setup = 2 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,884 | INFO     | . payload setup = 4 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,885 | INFO     | . stage-in = 0 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,885 | INFO     | . payload execution = 3135 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,885 | INFO     | . stage-out = 0 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,885 | INFO     | . log creation = 0 s
[2025-10-19 03:56:21] 2025-10-19 07:55:48,885 | INFO     | ..............................
[2025-10-19 03:56:21] 2025-10-19 07:55:49,271 | INFO     | 
[2025-10-19 03:56:21] 2025-10-19 07:55:49,271 | INFO     | job summary report
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | --------------------------------------------------
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | PanDA job id: 6837931960
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | task id: 46676269
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | errors: (none)
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | pilot state: finished 
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | transexitcode: 0
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | exeerrorcode: 0
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | exeerrordiag: 
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | exitcode: 0
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | exitmsg: OK
[2025-10-19 03:56:21] 2025-10-19 07:55:49,272 | INFO     | cpuconsumptiontime: 28771 s
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | nevents: 400
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | neventsw: 0
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | pid: 1055831
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | pgrp: 1055831
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | corecount: 10
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | event service: False
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | sizes: {0: 2348694, 1: 2348949, 4: 2349211, 11: 2349239, 3144: 2383743, 3145: 2383743, 3149: 2384097}
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | --------------------------------------------------
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | 
[2025-10-19 03:56:21] 2025-10-19 07:55:49,273 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-19 03:56:21] 2025-10-19 07:55:49,298 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,298 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,298 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,298 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,299 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,300 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 03:56:21] 2025-10-19 07:55:49,300 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,300 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 03:56:21] 2025-10-19 07:55:49,300 | INFO     | job 6837931960 has completed (purged errors)
[2025-10-19 03:56:21] 2025-10-19 07:55:49,300 | INFO     | overall cleanup function is called
[2025-10-19 03:56:21] 2025-10-19 07:55:50,309 | INFO     | --- collectZombieJob: --- 10, [1055831]
[2025-10-19 03:56:21] 2025-10-19 07:55:50,310 | INFO     | zombie collector waiting for pid 1055831
[2025-10-19 03:56:21] 2025-10-19 07:55:50,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 03:56:21] 2025-10-19 07:55:50,310 | INFO     | collected zombie processes
[2025-10-19 03:56:21] 2025-10-19 07:55:50,310 | INFO     | will attempt to kill all subprocesses of pid=1055831
[2025-10-19 03:56:21] 2025-10-19 07:55:50,617 | INFO     | process IDs to be killed: [1055831] (in reverse order)
[2025-10-19 03:56:21] 2025-10-19 07:55:50,721 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 03:56:21] 2025-10-19 07:55:50,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 03:56:21] 2025-10-19 07:55:50,736 | INFO     | did not find any defunct processes belonging to 1055831
[2025-10-19 03:56:21] 2025-10-19 07:55:50,751 | INFO     | did not find any defunct processes belonging to 1055831
[2025-10-19 03:56:21] 2025-10-19 07:55:50,751 | INFO     | ready for new job
[2025-10-19 03:56:21] 2025-10-19 07:55:50,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 03:56:21] 2025-10-19 07:55:50,753 | INFO     | ***************************************
[2025-10-19 03:56:21] 2025-10-19 07:55:50,753 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 03:56:21] 2025-10-19 07:55:50,753 | INFO     | ***************************************
[2025-10-19 03:56:21] 2025-10-19 07:55:50,753 | INFO     | 
[2025-10-19 03:56:21] 2025-10-19 07:55:50,759 | INFO     | architecture information:
[2025-10-19 03:56:21] 2025-10-19 07:55:50,760 | INFO     | executing command: cat /etc/os-release
[2025-10-19 03:56:21] 2025-10-19 07:55:50,777 | INFO     | cat /etc/os-release:
[2025-10-19 03:56:21] NAME="CentOS Linux"
[2025-10-19 03:56:21] VERSION="7 (Core)"
[2025-10-19 03:56:21] ID="centos"
[2025-10-19 03:56:21] ID_LIKE="rhel fedora"
[2025-10-19 03:56:21] VERSION_ID="7"
[2025-10-19 03:56:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 03:56:21] ANSI_COLOR="0;31"
[2025-10-19 03:56:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 03:56:21] HOME_URL="https://www.centos.org/"
[2025-10-19 03:56:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 03:56:21] 
[2025-10-19 03:56:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 03:56:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 03:56:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 03:56:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 03:56:21] 
[2025-10-19 03:56:21] 2025-10-19 07:55:50,777 | INFO     | ***************************************
[2025-10-19 03:56:21] 2025-10-19 07:55:51,280 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-19 03:56:21] 2025-10-19 07:55:51,300 | INFO     | sufficient remaining disk space (129827340288 B)
[2025-10-19 03:56:21] 2025-10-19 07:55:51,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 03:56:21] 2025-10-19 07:55:51,301 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 03:56:21] 2025-10-19 07:55:51,301 | INFO     | update_server=False
[2025-10-19 03:56:21] 2025-10-19 07:55:51,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 03:56:21] 2025-10-19 07:55:51,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 03:56:21] 2025-10-19 07:55:51,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 03:56:21] 2025-10-19 07:55:51,807 | INFO     | aborting loop
[2025-10-19 03:56:21] 2025-10-19 07:55:51,813 | INFO     | all data control threads have been joined
[2025-10-19 03:56:21] 2025-10-19 07:55:52,117 | INFO     | all job control threads have been joined
[2025-10-19 03:56:21] 2025-10-19 07:55:52,302 | INFO     | all payload control threads have been joined
[2025-10-19 03:56:21] 2025-10-19 07:55:52,302 | INFO     | [job] retrieve thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:52,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 03:56:21] 2025-10-19 07:55:52,782 | INFO     | [payload] validate_post thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:52,812 | INFO     | [job] job monitor thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:52,818 | INFO     | [data] control thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,044 | INFO     | [payload] failed_post thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,122 | INFO     | [job] control thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,127 | INFO     | [job] validate thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,304 | INFO     | [payload] control thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,326 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,328 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,668 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,780 | INFO     | [data] copytool_in thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:53,962 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 03:56:21] 2025-10-19 07:55:54,448 | INFO     | [data] copytool_out thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:54,968 | INFO     | [job] queue monitor thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:55:55,307 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:56:01,603 | INFO     | job.realtimelogging is not enabled
[2025-10-19 03:56:21] 2025-10-19 07:56:02,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 03:56:21] 2025-10-19 07:56:10,803 | INFO     | [monitor] cgroup control has ended
[2025-10-19 03:56:21] 2025-10-19 07:56:12,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560046339904)>', '<ExcThread(monitor, started 140559540791040)>']
[2025-10-19 03:56:21] 2025-10-19 07:56:17,898 | INFO     | all workflow threads have been joined
[2025-10-19 03:56:21] 2025-10-19 07:56:17,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 03:56:21] 2025-10-19 07:56:17,898 | INFO     | traces error code: 0
[2025-10-19 03:56:21] 2025-10-19 07:56:17,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 03:56:21] 2025-10-19 07:56:21,007 | INFO     | PID=1049353 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 03:56:21] 2025-10-19 07:56:21,008 | INFO     | .. there are 12 such processes running
[2025-10-19 03:56:21] 2025-10-19 07:56:21,008 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 03:56:21] 2025-10-19 07:56:21,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 03:56:21] 2025-10-19 07:56:21,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 03:56:21] 2025-10-19 07:56:21,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 03:56:21] 2025-10-19 07:56:21,009 | INFO     | [monitor] control thread has ended
[2025-10-19 03:56:21] 2025-10-19 07:56:21,140 [wrapper] ==== pilot stdout END ====
[2025-10-19 03:56:21] 2025-10-19 07:56:21,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 03:56:21] 2025-10-19 07:56:21,147 [wrapper] pilotpid: 1049353
[2025-10-19 03:56:21] 2025-10-19 07:56:21,149 [wrapper] Pilot exit status: 0
[2025-10-19 03:56:21] 2025-10-19 07:56:21,163 [wrapper] pandaids: 6837931960
[2025-10-19 03:56:21] 2025-10-19 07:56:21,229 [wrapper] cleanup supervisor_pilot 1124374 1049354
[2025-10-19 03:56:21] 2025-10-19 07:56:21,234 [wrapper] Test setup, not cleaning
[2025-10-19 03:56:21] 2025-10-19 07:56:21,239 [wrapper] apfmon messages muted
[2025-10-19 03:56:21] 2025-10-19 07:56:21,244 [wrapper] ==== wrapper stdout END ====
[2025-10-19 03:56:21] 2025-10-19 07:56:21,248 [wrapper] ==== wrapper stderr END ====
[2025-10-19 03:56:21]  *** Error codes and diagnostics ***
[2025-10-19 03:56:21]     "exeErrorCode": 0,
[2025-10-19 03:56:21]     "exeErrorDiag": "",
[2025-10-19 03:56:21]     "pilotErrorCode": 0,
[2025-10-19 03:56:21]     "pilotErrorDiag": "",
[2025-10-19 03:56:21]  *** Listing of results directory ***
[2025-10-19 03:56:21] total 415712
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 21:35 pilot3.tar.gz
[2025-10-19 03:56:21] -rwx------. 1 boincer umatlas     36292 Oct 10 21:43 runpilot2-wrapper.sh
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 21:43 queuedata.json
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas       100 Oct 19 03:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 03:56:21] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 19 03:02 run_atlas
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas       105 Oct 19 03:02 job.xml
[2025-10-19 03:56:21] -rw-r--r--. 2 boincer umatlas 224009143 Oct 19 03:02 EVNT.46676267._001958.pool.root.1
[2025-10-19 03:56:21] -rw-r--r--. 2 boincer umatlas     15120 Oct 19 03:02 start_atlas.sh
[2025-10-19 03:56:21] drwxrwx--x. 2 boincer umatlas      4096 Oct 19 03:02 shared
[2025-10-19 03:56:21] -rw-r--r--. 2 boincer umatlas    569678 Oct 19 03:02 input.tar.gz
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas         0 Oct 19 03:02 boinc_lockfile
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas      2550 Oct 19 03:02 pandaJob.out
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas    976750 Oct 19 03:03 agis_schedconf.cvmfs.json
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas   1560740 Oct 19 03:03 agis_ddmendpoints.agis.ALL.json
[2025-10-19 03:56:21] drwx------. 5 boincer umatlas      4096 Oct 19 03:03 pilot3
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas 196163665 Oct 19 03:55 HITS.46676269._048543.pool.root.1
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas       529 Oct 19 03:55 boinc_task_state.xml
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas      1045 Oct 19 03:55 memory_monitor_summary.json
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas    324508 Oct 19 03:55 log.46676269._048543.job.log.tgz.1
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas      7782 Oct 19 03:55 heartbeat.json
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas      6947 Oct 19 03:56 init_data.xml
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas        27 Oct 19 03:56 wrapper_checkpoint.txt
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas      8192 Oct 19 03:56 boinc_mmap_file
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas        95 Oct 19 03:56 pilot_heartbeat.json
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas       823 Oct 19 03:56 pilotlog.txt
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas    482955 Oct 19 03:56 log.46676269._048543.job.log.1
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas       357 Oct 19 03:56 output.list
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas       620 Oct 19 03:56 runtime_log
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas    829440 Oct 19 03:56 result.tar.gz
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas      8705 Oct 19 03:56 runtime_log.err
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas       652 Oct 19 03:56 KM0MDmcodR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm90eNDmK0WrNo.diag
[2025-10-19 03:56:21] -rw-r--r--. 1 boincer umatlas     21487 Oct 19 03:56 stderr.txt
[2025-10-19 03:56:21] HITS file was successfully produced:
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas 196163665 Oct 19 03:55 shared/HITS.pool.root.1
[2025-10-19 03:56:21]  *** Contents of shared directory: ***
[2025-10-19 03:56:21] total 411720
[2025-10-19 03:56:21] -rw-r--r--. 2 boincer umatlas 224009143 Oct 19 03:02 ATLAS.root_0
[2025-10-19 03:56:21] -rw-r--r--. 2 boincer umatlas     15120 Oct 19 03:02 start_atlas.sh
[2025-10-19 03:56:21] -rw-r--r--. 2 boincer umatlas    569678 Oct 19 03:02 input.tar.gz
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas 196163665 Oct 19 03:55 HITS.pool.root.1
[2025-10-19 03:56:21] -rw-------. 1 boincer umatlas    829440 Oct 19 03:56 result.tar.gz
03:56:23 (1045630): run_atlas exited; CPU time 28791.718595
03:56:23 (1045630): called boinc_finish(0)

</stderr_txt>
]]>

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