Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:50 (543076): wrapper (7.7.26015): starting
17:56:50 (543076): wrapper: running run_atlas (--nthreads 3)
[2025-10-19 17:56:50] Arguments: --nthreads 3
[2025-10-19 17:56:50] Threads: 3
[2025-10-19 17:56:50] Checking for CVMFS
[2025-10-19 17:56:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 17:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 17:56:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 17:56:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 17:56:51] 2.9.2.0 3245789 5179 83984 151892 0 57 4830568 36864001 0 130560 0 3904056 99.990 184574 2250 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 17:56:51] CVMFS is ok
[2025-10-19 17:56:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 17:56:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 17:56:51] Further information can be found at the LHC@home message board.
[2025-10-19 17:56:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 17:56:51] Checking for apptainer binary...
[2025-10-19 17:56:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 17:56:51] Running /usr/bin/apptainer --version
[2025-10-19 17:56:51] apptainer version 1.4.1-1.1
[2025-10-19 17:56:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 17:56:51] thA332
[2025-10-19 17:56:51] apptainer works
[2025-10-19 17:56:51] Set ATHENA_PROC_NUMBER=3
[2025-10-19 17:56:51] Set ATHENA_CORE_NUMBER=3
[2025-10-19 17:56:51] Starting ATLAS job with PandaID=6848032159
[2025-10-19 17:56:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 19:32:29]  *** The last 200 lines of the pilot log: ***
[2025-10-19 19:32:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 19:32:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 19:32:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 19:32:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 19:32:29] 
[2025-10-19 19:32:29] 2025-10-19 17:31:58,950 | INFO     | ***************************************
[2025-10-19 19:32:29] 2025-10-19 17:31:59,453 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 19:32:29] 2025-10-19 17:31:59,466 | INFO     | sufficient remaining disk space (257051066368 B)
[2025-10-19 19:32:29] 2025-10-19 17:31:59,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 19:32:29] 2025-10-19 17:31:59,466 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 19:32:29] 2025-10-19 17:31:59,466 | INFO     | update_server=False
[2025-10-19 19:32:29] 2025-10-19 17:31:59,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 19:32:29] 2025-10-19 17:31:59,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 19:32:29] 2025-10-19 17:31:59,612 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-19 19:32:29] 2025-10-19 17:31:59,612 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-19 19:32:29] 2025-10-19 17:31:59,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 19:32:29] 2025-10-19 17:31:59,613 | INFO     | will abort loop
[2025-10-19 19:32:29] 2025-10-19 17:31:59,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 19:32:29] 2025-10-19 17:31:59,890 | INFO     | all payload control threads have been joined
[2025-10-19 19:32:29] 2025-10-19 17:32:00,292 | INFO     | all job control threads have been joined
[2025-10-19 19:32:29] 2025-10-19 17:32:00,433 | INFO     | all data control threads have been joined
[2025-10-19 19:32:29] 2025-10-19 17:32:00,472 | INFO     | [job] retrieve thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:00,472 | INFO     | [job] queue monitor thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:00,618 | INFO     | [job] job monitor thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:00,755 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:00,895 | INFO     | [payload] control thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 19:32:29] 2025-10-19 17:32:01,298 | INFO     | [job] control thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,312 | INFO     | [payload] failed_post thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,337 | INFO     | [data] copytool_in thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,373 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,438 | INFO     | [data] control thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,864 | INFO     | [job] validate thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,871 | INFO     | [data] copytool_out thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,900 | INFO     | [payload] validate_post thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,946 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:01,949 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:03,638 | INFO     | [monitor] cgroup control has ended
[2025-10-19 19:32:29] 2025-10-19 17:32:05,142 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 19:32:29] 2025-10-19 17:32:05,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083256289088)>', '<ExcThread(monitor, started 140082589701888)>']
[2025-10-19 19:32:29] 2025-10-19 17:32:10,718 | INFO     | all workflow threads have been joined
[2025-10-19 19:32:29] 2025-10-19 17:32:10,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 19:32:29] 2025-10-19 17:32:10,718 | INFO     | traces error code: 0
[2025-10-19 19:32:29] 2025-10-19 17:32:10,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 19:32:29] 2025-10-19 17:32:29,491 | INFO     | PID=546794 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-19 19:32:29] 2025-10-19 17:32:29,492 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 19:32:29] 2025-10-19 17:32:29,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 19:32:29] 2025-10-19 17:32:29,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 19:32:29] 2025-10-19 17:32:29,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 19:32:29] 2025-10-19 17:32:29,492 | INFO     | [monitor] control thread has ended
[2025-10-19 19:32:29] 2025-10-19 17:32:29,538 [wrapper] ==== pilot stdout END ====
[2025-10-19 19:32:29] 2025-10-19 17:32:29,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 19:32:29] 2025-10-19 17:32:29,542 [wrapper] pilotpid: 546794
[2025-10-19 19:32:29] 2025-10-19 17:32:29,545 [wrapper] Pilot exit status: 0
[2025-10-19 19:32:29] 2025-10-19 17:32:29,552 [wrapper] pandaids: 6848032159
[2025-10-19 19:32:29] 2025-10-19 17:32:29,567 [wrapper] cleanup supervisor_pilot  565507 546795
[2025-10-19 19:32:29] 2025-10-19 17:32:29,570 [wrapper] Test setup, not cleaning
[2025-10-19 19:32:29] 2025-10-19 17:32:29,572 [wrapper] apfmon messages muted
[2025-10-19 19:32:29] 2025-10-19 17:32:29,574 [wrapper] ==== wrapper stdout END ====
[2025-10-19 19:32:29] 2025-10-19 17:32:29,576 [wrapper] ==== wrapper stderr END ====
[2025-10-19 19:32:29]  *** Error codes and diagnostics ***
[2025-10-19 19:32:29]     "exeErrorCode": 0,
[2025-10-19 19:32:29]     "exeErrorDiag": "",
[2025-10-19 19:32:29]     "pilotErrorCode": 0,
[2025-10-19 19:32:29]     "pilotErrorDiag": "",
[2025-10-19 19:32:29]  *** Listing of results directory ***
[2025-10-19 19:32:29] total 424840
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc      5112 Oct 18 12:28 queuedata.json
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc    557409 Oct 18 12:29 pilot3.tar.gz
[2025-10-19 19:32:29] -rwx------ 1 boinc boinc     36292 Oct 18 12:30 runpilot2-wrapper.sh
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc       100 Oct 19 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 19:32:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 17:56 run_atlas
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc       105 Oct 19 17:56 job.xml
[2025-10-19 19:32:29] -rw-r--r-- 2 boinc boinc 224897178 Oct 19 17:56 EVNT.46771634._000802.pool.root.1
[2025-10-19 19:32:29] -rw-r--r-- 2 boinc boinc    569681 Oct 19 17:56 input.tar.gz
[2025-10-19 19:32:29] -rw-r--r-- 2 boinc boinc     15120 Oct 19 17:56 start_atlas.sh
[2025-10-19 19:32:29] drwxrwx--x 2 boinc boinc      4096 Oct 19 17:56 shared
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc         0 Oct 19 17:56 boinc_setup_complete
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc      6438 Oct 19 17:56 init_data.xml
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc         0 Oct 19 17:56 boinc_lockfile
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc      2557 Oct 19 17:56 pandaJob.out
[2025-10-19 19:32:29] -rw------- 1 boinc boinc    976742 Oct 19 17:56 agis_schedconf.cvmfs.json
[2025-10-19 19:32:29] -rw------- 1 boinc boinc   1560740 Oct 19 17:56 agis_ddmendpoints.agis.ALL.json
[2025-10-19 19:32:29] drwx------ 5 boinc boinc      4096 Oct 19 17:56 pilot3
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc       529 Oct 19 19:31 boinc_task_state.xml
[2025-10-19 19:32:29] -rw------- 1 boinc boinc 204055498 Oct 19 19:31 HITS.46771637._041475.pool.root.1
[2025-10-19 19:32:29] -rw------- 1 boinc boinc      1020 Oct 19 19:31 memory_monitor_summary.json
[2025-10-19 19:32:29] -rw------- 1 boinc boinc    263390 Oct 19 19:31 log.46771637._041475.job.log.tgz.1
[2025-10-19 19:32:29] -rw------- 1 boinc boinc      7757 Oct 19 19:31 heartbeat.json
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc      8192 Oct 19 19:32 boinc_mmap_file
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc        27 Oct 19 19:32 wrapper_checkpoint.txt
[2025-10-19 19:32:29] -rw------- 1 boinc boinc       746 Oct 19 19:32 pilotlog.txt
[2025-10-19 19:32:29] -rw------- 1 boinc boinc        95 Oct 19 19:32 pilot_heartbeat.json
[2025-10-19 19:32:29] -rw------- 1 boinc boinc    829821 Oct 19 19:32 log.46771637._041475.job.log.1
[2025-10-19 19:32:29] -rw------- 1 boinc boinc       357 Oct 19 19:32 output.list
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc       620 Oct 19 19:32 runtime_log
[2025-10-19 19:32:29] -rw------- 1 boinc boinc   1116160 Oct 19 19:32 result.tar.gz
[2025-10-19 19:32:29] -rw------- 1 boinc boinc       659 Oct 19 19:32 skVLDmqNJU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9pwNDmgqiSen.diag
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc      8777 Oct 19 19:32 runtime_log.err
[2025-10-19 19:32:29] -rw-r--r-- 1 boinc boinc      8436 Oct 19 19:32 stderr.txt
[2025-10-19 19:32:29] HITS file was successfully produced:
[2025-10-19 19:32:29] -rw------- 1 boinc boinc 204055498 Oct 19 19:31 shared/HITS.pool.root.1
[2025-10-19 19:32:29]  *** Contents of shared directory: ***
[2025-10-19 19:32:29] total 420580
[2025-10-19 19:32:29] -rw-r--r-- 2 boinc boinc 224897178 Oct 19 17:56 ATLAS.root_0
[2025-10-19 19:32:29] -rw-r--r-- 2 boinc boinc    569681 Oct 19 17:56 input.tar.gz
[2025-10-19 19:32:29] -rw-r--r-- 2 boinc boinc     15120 Oct 19 17:56 start_atlas.sh
[2025-10-19 19:32:29] -rw------- 1 boinc boinc 204055498 Oct 19 19:31 HITS.pool.root.1
[2025-10-19 19:32:29] -rw------- 1 boinc boinc   1116160 Oct 19 19:32 result.tar.gz
19:32:31 (543076): run_atlas exited; CPU time 16382.597526
19:32:31 (543076): called boinc_finish(0)

</stderr_txt>
]]>

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