Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
03:00:21 (22160): wrapper (7.7.26015): starting
03:00:21 (22160): wrapper: running run_atlas (--nthreads 8)
[2025-10-19 03:00:21] Arguments: --nthreads 8
[2025-10-19 03:00:21] Threads: 8
[2025-10-19 03:00:21] Checking for CVMFS
[2025-10-19 03:00:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 03:00:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 03:00:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 03:00:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 03:00:21] 2.11.0.0 4550 10141 83660 151869 0 189 2348730 4096000 14833 130560 0 6500129 99.600 5158670 1430 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-19 03:00:21] CVMFS is ok
[2025-10-19 03:00:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 03:00:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 03:00:21] Further information can be found at the LHC@home message board.
[2025-10-19 03:00:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 03:00:21] Checking for apptainer binary...
[2025-10-19 03:00:21] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-19 03:00:21] apptainer is not installed, using version from CVMFS
[2025-10-19 03:00:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 03:00:22] WARNING: Environment variable TMPDIR already has value [/tmp/job_10685536/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node024
[2025-10-19 03:00:22] apptainer works
[2025-10-19 03:00:22] Set ATHENA_PROC_NUMBER=8
[2025-10-19 03:00:22] Set ATHENA_CORE_NUMBER=8
[2025-10-19 03:00:22] Starting ATLAS job with PandaID=6838632099
[2025-10-19 03:00:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10685536/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 03:44:47]  *** The last 200 lines of the pilot log: ***
[2025-10-19 03:44:47]  lfn=log.46676269._060629.job.log.tgz.1
[2025-10-19 03:44:47]  mtime=0
[2025-10-19 03:44:47]  protocol_id=None
[2025-10-19 03:44:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-19 03:44:47]  replicas=None
[2025-10-19 03:44:47]  scope=mc23_13p6TeV
[2025-10-19 03:44:47]  status=None
[2025-10-19 03:44:47]  status_code=0
[2025-10-19 03:44:47]  storage_token=
[2025-10-19 03:44:47]  surl=/tmp/job_10685536/atlas/pilot/slots/0/PanDA_Pilot-6838632099/log.46676269._060629.job.log.tgz.1
[2025-10-19 03:44:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/cf/log.46676269._060629.job.log.tgz.1
[2025-10-19 03:44:47]  workdir=None
[2025-10-19 03:44:47] ]
[2025-10-19 03:44:47] 2025-10-19 01:44:11,360 | INFO     | transferring file log.46676269._060629.job.log.tgz.1 from /tmp/job_10685536/atlas/pilot/slots/0/PanDA_Pilot-6838632099/log.46676269._060629.job.log.tgz.1 to /tmp/j
[2025-10-19 03:44:47] 2025-10-19 01:44:11,360 | INFO     | executing command: /usr/bin/env mv /tmp/job_10685536/atlas/pilot/slots/0/PanDA_Pilot-6838632099/log.46676269._060629.job.log.tgz.1 /tmp/job_10685536/atlas/pilot/sl
[2025-10-19 03:44:47] 2025-10-19 01:44:11,368 | INFO     | adding to output.list: log.46676269._060629.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/cf/log.46676269._060629.job.log.tg
[2025-10-19 03:44:47] 2025-10-19 01:44:11,368 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 03:44:47] 2025-10-19 01:44:11,368 | INFO     | summary of transferred files:
[2025-10-19 03:44:47] 2025-10-19 01:44:11,368 | INFO     |  -- lfn=log.46676269._060629.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 03:44:47] 2025-10-19 01:44:11,368 | INFO     | stage-out finished correctly
[2025-10-19 03:44:47] 2025-10-19 01:44:11,639 | INFO     | time since job start (2625s) is within the limit (172800.0s)
[2025-10-19 03:44:47] 2025-10-19 01:44:12,181 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | job 6838632099 has state=finished
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | preparing for final server update for job 6838632099 in state='finished'
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | this job has now completed (state=finished)
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | log transfer has been attempted: DONE
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | job 6838632099 has finished - writing final server update
[2025-10-19 03:44:47] 2025-10-19 01:44:12,227 | INFO     | total number of processed events: 400 (read)
[2025-10-19 03:44:47] 2025-10-19 01:44:12,228 | INFO     | executing command: lscpu
[2025-10-19 03:44:47] 2025-10-19 01:44:12,258 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 03:44:47] 2025-10-19 01:44:12,938 | INFO     | monitor loop #197: job 0:6838632099 is in state 'finished'
[2025-10-19 03:44:47] 2025-10-19 01:44:12,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 03:44:47] 2025-10-19 01:44:13,644 | INFO     | time since job start (2627s) is within the limit (172800.0s)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,084 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 03:44:47] 2025-10-19 01:44:14,088 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2655.3215625000003
[2025-10-19 03:44:47] 2025-10-19 01:44:14,093 | INFO     | using path: /tmp/job_10685536/atlas/pilot/slots/0/PanDA_Pilot-6838632099/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,094 | INFO     | extracted standard info from prmon json
[2025-10-19 03:44:47] 2025-10-19 01:44:14,094 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 03:44:47] 2025-10-19 01:44:14,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 03:44:47] 2025-10-19 01:44:14,094 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 03:44:47] 2025-10-19 01:44:14,094 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | fitting pss+swap vs Time
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | sum of square deviations: 14456085.0
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | sum of deviations: -327472155.99999994
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | mean x: 1760837016.5
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | mean y: 2533114.888888889
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | -- intersect: 39890586772.4222
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | intersect: 39890586772.4222
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | chi2: 0.003072006500677681
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | -- intersect: 39890586772.4222
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | current memory leak: -22.65 B/s (using 36 data points, chi2=0.00)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | could have reported an average CPU frequency of 2950 MHz (5 samples)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | ..............................
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | . Timing measurements:
[2025-10-19 03:44:47] 2025-10-19 01:44:14,095 | INFO     | . get job = 0 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | . initial setup = 1 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | . payload setup = 2 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | . stage-in = 0 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | . payload execution = 2605 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | . stage-out = 0 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | . log creation = 0 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,096 | INFO     | ..............................
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | 
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | job summary report
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | --------------------------------------------------
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | PanDA job id: 6838632099
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | task id: 46676269
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | errors: (none)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | pilot state: finished 
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | transexitcode: 0
[2025-10-19 03:44:47] 2025-10-19 01:44:14,145 | INFO     | exeerrorcode: 0
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | exeerrordiag: 
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | exitcode: 0
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | exitmsg: OK
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | cpuconsumptiontime: 19076 s
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | nevents: 400
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | neventsw: 0
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | pid: 2812
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | pgrp: 2812
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | corecount: 8
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | event service: False
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | sizes: {0: 2348996, 2: 2349258, 11: 2349286, 2611: 2374630, 2612: 2383714, 2614: 2383884}
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | --------------------------------------------------
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | 
[2025-10-19 03:44:47] 2025-10-19 01:44:14,146 | INFO     | executing command: ls -lF /tmp/job_10685536/atlas/pilot/slots/0
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,157 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 03:44:47] 2025-10-19 01:44:14,157 | INFO     | job 6838632099 has completed (purged errors)
[2025-10-19 03:44:47] 2025-10-19 01:44:14,157 | INFO     | overall cleanup function is called
[2025-10-19 03:44:47] 2025-10-19 01:44:15,162 | INFO     | --- collectZombieJob: --- 10, [2812]
[2025-10-19 03:44:47] 2025-10-19 01:44:15,162 | INFO     | zombie collector waiting for pid 2812
[2025-10-19 03:44:47] 2025-10-19 01:44:15,162 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 03:44:47] 2025-10-19 01:44:15,162 | INFO     | collected zombie processes
[2025-10-19 03:44:47] 2025-10-19 01:44:15,162 | INFO     | will attempt to kill all subprocesses of pid=2812
[2025-10-19 03:44:47] 2025-10-19 01:44:15,265 | INFO     | process IDs to be killed: [2812] (in reverse order)
[2025-10-19 03:44:47] 2025-10-19 01:44:15,303 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 03:44:47] 2025-10-19 01:44:15,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 03:44:47] 2025-10-19 01:44:15,306 | INFO     | did not find any defunct processes belonging to 2812
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | did not find any defunct processes belonging to 2812
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | ready for new job
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | ***************************************
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | ***************************************
[2025-10-19 03:44:47] 2025-10-19 01:44:15,310 | INFO     | 
[2025-10-19 03:44:47] 2025-10-19 01:44:15,324 | INFO     | architecture information:
[2025-10-19 03:44:47] 2025-10-19 01:44:15,325 | INFO     | executing command: cat /etc/os-release
[2025-10-19 03:44:47] 2025-10-19 01:44:15,331 | INFO     | cat /etc/os-release:
[2025-10-19 03:44:47] NAME="CentOS Linux"
[2025-10-19 03:44:47] VERSION="7 (Core)"
[2025-10-19 03:44:47] ID="centos"
[2025-10-19 03:44:47] ID_LIKE="rhel fedora"
[2025-10-19 03:44:47] VERSION_ID="7"
[2025-10-19 03:44:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 03:44:47] ANSI_COLOR="0;31"
[2025-10-19 03:44:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 03:44:47] HOME_URL="https://www.centos.org/"
[2025-10-19 03:44:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 03:44:47] 
[2025-10-19 03:44:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 03:44:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 03:44:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 03:44:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 03:44:47] 
[2025-10-19 03:44:47] 2025-10-19 01:44:15,331 | INFO     | ***************************************
[2025-10-19 03:44:47] 2025-10-19 01:44:15,834 | INFO     | executing command: df -mP /tmp/job_10685536/atlas/pilot/slots/0
[2025-10-19 03:44:47] 2025-10-19 01:44:15,840 | INFO     | sufficient remaining disk space (227113172992 B)
[2025-10-19 03:44:47] 2025-10-19 01:44:15,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 03:44:47] 2025-10-19 01:44:15,841 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 03:44:47] 2025-10-19 01:44:15,841 | INFO     | update_server=False
[2025-10-19 03:44:47] 2025-10-19 01:44:15,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 03:44:47] 2025-10-19 01:44:15,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 03:44:47] 2025-10-19 01:44:16,251 | INFO     | all job control threads have been joined
[2025-10-19 03:44:47] 2025-10-19 01:44:16,377 | INFO     | all data control threads have been joined
[2025-10-19 03:44:47] 2025-10-19 01:44:16,434 | INFO     | all payload control threads have been joined
[2025-10-19 03:44:47] 2025-10-19 01:44:16,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 03:44:47] 2025-10-19 01:44:16,446 | INFO     | aborting loop
[2025-10-19 03:44:47] 2025-10-19 01:44:16,846 | INFO     | [job] retrieve thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:16,846 | INFO     | [job] queue monitor thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:16,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 03:44:47] 2025-10-19 01:44:17,248 | INFO     | [payload] failed_post thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,256 | INFO     | [job] control thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,382 | INFO     | [data] control thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,431 | INFO     | [job] validate thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,439 | INFO     | [payload] control thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,451 | INFO     | [job] job monitor thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,537 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,645 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,670 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,708 | INFO     | [data] copytool_in thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:17,987 | INFO     | [payload] validate_post thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:18,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 03:44:47] 2025-10-19 01:44:18,930 | INFO     | [data] copytool_out thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:22,237 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:26,284 | INFO     | job.realtimelogging is not enabled
[2025-10-19 03:44:47] 2025-10-19 01:44:27,289 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 03:44:47] 2025-10-19 01:44:30,621 | INFO     | [monitor] cgroup control has ended
[2025-10-19 03:44:47] 2025-10-19 01:44:31,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-19 03:44:47] 2025-10-19 01:44:36,651 | INFO     | all workflow threads have been joined
[2025-10-19 03:44:47] 2025-10-19 01:44:36,651 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 03:44:47] 2025-10-19 01:44:36,651 | INFO     | traces error code: 0
[2025-10-19 03:44:47] 2025-10-19 01:44:36,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 03:44:47] 2025-10-19 01:44:46,841 | INFO     | PID=26876 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-19 03:44:47] 2025-10-19 01:44:46,841 | INFO     | .. there are 2 such processes running
[2025-10-19 03:44:47] 2025-10-19 01:44:46,841 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 03:44:47] 2025-10-19 01:44:46,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 03:44:47] 2025-10-19 01:44:46,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 03:44:47] 2025-10-19 01:44:46,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 03:44:47] 2025-10-19 01:44:46,842 | CRITICAL | thread 'MainThread' is not alive
[2025-10-19 03:44:47] 2025-10-19 01:44:46,842 | INFO     | [monitor] control thread has ended
[2025-10-19 03:44:47] 2025-10-19 01:44:46,894 [wrapper] ==== pilot stdout END ====
[2025-10-19 03:44:47] 2025-10-19 01:44:46,895 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 03:44:47] 2025-10-19 01:44:46,897 [wrapper] pilotpid: 26876
[2025-10-19 03:44:47] 2025-10-19 01:44:46,898 [wrapper] Pilot exit status: 0
[2025-10-19 03:44:47] 2025-10-19 01:44:46,902 [wrapper] pandaids: 6838632099
[2025-10-19 03:44:47] 2025-10-19 01:44:46,925 [wrapper] cleanup supervisor_pilot  1545 26877
[2025-10-19 03:44:47] 2025-10-19 01:44:46,926 [wrapper] Test setup, not cleaning
[2025-10-19 03:44:47] 2025-10-19 01:44:46,927 [wrapper] apfmon messages muted
[2025-10-19 03:44:47] 2025-10-19 01:44:46,928 [wrapper] ==== wrapper stdout END ====
[2025-10-19 03:44:47] 2025-10-19 01:44:46,929 [wrapper] ==== wrapper stderr END ====
[2025-10-19 03:44:47]  *** Error codes and diagnostics ***
[2025-10-19 03:44:47]     "exeErrorCode": 0,
[2025-10-19 03:44:47]     "exeErrorDiag": "",
[2025-10-19 03:44:47]     "pilotErrorCode": 0,
[2025-10-19 03:44:47]     "pilotErrorDiag": "",
[2025-10-19 03:44:47]  *** Listing of results directory ***
[2025-10-19 03:44:47] total 405672
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user    557409 Oct 11 17:50 pilot3.tar.gz
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      5112 Oct 11 18:08 queuedata.json
[2025-10-19 03:44:47] -rwx------ 1 mf493845 unix-user     36292 Oct 11 18:09 runpilot2-wrapper.sh
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user       100 Oct 19 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 03:44:47] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 19 03:00 run_atlas
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user       105 Oct 19 03:00 job.xml
[2025-10-19 03:44:47] -rw-r--r-- 2 mf493845 unix-user 222315236 Oct 19 03:00 EVNT.46676267._002434.pool.root.1
[2025-10-19 03:44:47] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 19 03:00 start_atlas.sh
[2025-10-19 03:44:47] drwxrwx--x 2 mf493845 unix-user       100 Oct 19 03:00 shared
[2025-10-19 03:44:47] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 19 03:00 input.tar.gz
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      6394 Oct 19 03:00 init_data.xml
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user         0 Oct 19 03:00 boinc_setup_complete
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      8192 Oct 19 03:00 boinc_mmap_file
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user         0 Oct 19 03:00 boinc_lockfile
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      2549 Oct 19 03:00 pandaJob.out
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user    976750 Oct 19 03:00 agis_schedconf.cvmfs.json
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user   1560740 Oct 19 03:00 agis_ddmendpoints.agis.ALL.json
[2025-10-19 03:44:47] drwx------ 5 mf493845 unix-user       440 Oct 19 03:00 pilot3
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user 187794246 Oct 19 03:43 HITS.46676269._060629.pool.root.1
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user        95 Oct 19 03:44 pilot_heartbeat.json
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      1015 Oct 19 03:44 memory_monitor_summary.json
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user    289227 Oct 19 03:44 log.46676269._060629.job.log.tgz.1
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      7766 Oct 19 03:44 heartbeat.json
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user       890 Oct 19 03:44 pilotlog.txt
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user    421987 Oct 19 03:44 log.46676269._060629.job.log.1
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user       357 Oct 19 03:44 output.list
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user       620 Oct 19 03:44 runtime_log
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user    727040 Oct 19 03:44 result.tar.gz
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user      9076 Oct 19 03:44 runtime_log.err
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user       641 Oct 19 03:44 JsjLDm7KrR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFsgNDmEMfUyn.diag
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user     22016 Oct 19 03:44 stderr.txt
[2025-10-19 03:44:47] HITS file was successfully produced:
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user 187794246 Oct 19 03:43 shared/HITS.pool.root.1
[2025-10-19 03:44:47]  *** Contents of shared directory: ***
[2025-10-19 03:44:47] total 401792
[2025-10-19 03:44:47] -rw-r--r-- 2 mf493845 unix-user 222315236 Oct 19 03:00 ATLAS.root_0
[2025-10-19 03:44:47] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 19 03:00 start_atlas.sh
[2025-10-19 03:44:47] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 19 03:00 input.tar.gz
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user 187794246 Oct 19 03:43 HITS.pool.root.1
[2025-10-19 03:44:47] -rw------- 1 mf493845 unix-user    727040 Oct 19 03:44 result.tar.gz
03:44:48 (22160): run_atlas exited; CPU time 19115.537426
03:44:48 (22160): called boinc_finish(0)

</stderr_txt>
]]>

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