Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:30:50 (3962): wrapper (7.7.26015): starting
02:30:50 (3962): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 02:30:50] Arguments: --nthreads 4
[2025-10-19 02:30:50] Threads: 4
[2025-10-19 02:30:50] Checking for CVMFS
[2025-10-19 02:30:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 02:31:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 02:31:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 02:31:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 02:31:01] 2.11.5.0 4170 0 25184 151870 3 1 3867777 4096001 0 130560 0 0 0.000 1291 447 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2025-10-19 02:31:01] CVMFS is ok
[2025-10-19 02:31:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 02:31:01] Checking for apptainer binary...
[2025-10-19 02:31:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 02:31:01] Running /usr/bin/apptainer --version
[2025-10-19 02:31:02] apptainer version 1.0.3
[2025-10-19 02:31:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 02:31:03] TeeC29
[2025-10-19 02:31:03] apptainer works
[2025-10-19 02:31:03] Set ATHENA_PROC_NUMBER=4
[2025-10-19 02:31:03] Set ATHENA_CORE_NUMBER=4
[2025-10-19 02:31:03] Starting ATLAS job with PandaID=6848045007
[2025-10-19 02:31:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 05:38:04]  *** The last 200 lines of the pilot log: ***
[2025-10-19 05:38:04] 2025-10-19 04:37:14,550 | INFO     | monitor loop #906: job 0:6848045007 is in state 'finished'
[2025-10-19 05:38:04] 2025-10-19 04:37:14,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,967 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 05:38:04] 2025-10-19 04:37:14,968 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 3200.06575
[2025-10-19 05:38:04] 2025-10-19 04:37:14,969 | INFO     | using path: /home/m/BOINC/slots/0/PanDA_Pilot-6848045007/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,970 | INFO     | extracted standard info from prmon json
[2025-10-19 05:38:04] 2025-10-19 04:37:14,970 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 05:38:04] 2025-10-19 04:37:14,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 05:38:04] 2025-10-19 04:37:14,970 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 05:38:04] 2025-10-19 04:37:14,970 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 05:38:04] 2025-10-19 04:37:14,974 | INFO     | fitting pss+swap vs Time
[2025-10-19 05:38:04] 2025-10-19 04:37:14,974 | INFO     | sum of square deviations: 1778377530.0
[2025-10-19 05:38:04] 2025-10-19 04:37:14,976 | INFO     | sum of deviations: -23464609652.000004
[2025-10-19 05:38:04] 2025-10-19 04:37:14,976 | INFO     | mean x: 1760842954.0
[2025-10-19 05:38:04] 2025-10-19 04:37:14,976 | INFO     | mean y: 2401014.6312849163
[2025-10-19 05:38:04] 2025-10-19 04:37:14,976 | INFO     | -- intersect: 23235652603.277145
[2025-10-19 05:38:04] 2025-10-19 04:37:14,976 | INFO     | intersect: 23235652603.277145
[2025-10-19 05:38:04] 2025-10-19 04:37:14,977 | INFO     | chi2: 2.09510813396701
[2025-10-19 05:38:04] 2025-10-19 04:37:14,977 | INFO     | sum of square deviations: 1633472487.5
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | sum of deviations: -22475797425.500008
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | mean x: 1760842801.5
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | mean y: 2402055.5459770113
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | -- intersect: 24230753868.948605
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | intersect: 24230753868.948605
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | chi2: 2.090925814581682
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | current chi2=2.090925814581682 (change=0.19962307995096293 %)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,979 | INFO     | right removable region: 173
[2025-10-19 05:38:04] 2025-10-19 04:37:14,980 | INFO     | sum of square deviations: 1633472487.5
[2025-10-19 05:38:04] 2025-10-19 04:37:14,981 | INFO     | sum of deviations: -51995741901.49999
[2025-10-19 05:38:04] 2025-10-19 04:37:14,982 | INFO     | mean x: 1760843106.5
[2025-10-19 05:38:04] 2025-10-19 04:37:14,982 | INFO     | mean y: 2430681.143678161
[2025-10-19 05:38:04] 2025-10-19 04:37:14,982 | INFO     | -- intersect: 56052559713.151306
[2025-10-19 05:38:04] 2025-10-19 04:37:14,982 | INFO     | intersect: 56052559713.151306
[2025-10-19 05:38:04] 2025-10-19 04:37:14,982 | INFO     | chi2: 0.3872100792645482
[2025-10-19 05:38:04] 2025-10-19 04:37:14,982 | INFO     | current chi2=0.3872100792645482 (change=81.51837258483741 %)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,983 | INFO     | sum of square deviations: 1496660620.0
[2025-10-19 05:38:04] 2025-10-19 04:37:14,984 | INFO     | sum of deviations: -44805430371.999985
[2025-10-19 05:38:04] 2025-10-19 04:37:14,984 | INFO     | mean x: 1760843259.0
[2025-10-19 05:38:04] 2025-10-19 04:37:14,984 | INFO     | mean y: 2422640.5443786983
[2025-10-19 05:38:04] 2025-10-19 04:37:14,984 | INFO     | -- intersect: 52716671270.35735
[2025-10-19 05:38:04] 2025-10-19 04:37:14,984 | INFO     | intersect: 52716671270.35735
[2025-10-19 05:38:04] 2025-10-19 04:37:14,985 | INFO     | chi2: 0.3751807084035387
[2025-10-19 05:38:04] 2025-10-19 04:37:14,985 | INFO     | current chi2=0.3751807084035387 (change=3.1066781329291957 %)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,985 | INFO     | left removable region: 20
[2025-10-19 05:38:04] 2025-10-19 04:37:14,985 | INFO     | sum of square deviations: 1110539892.0
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | sum of deviations: -26069041862.000008
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | mean x: 1760843381.0
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | mean y: 2402468.0849673203
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | -- intersect: 41336802197.792854
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | intersect: 41336802197.792854
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | chi2: 0.2968206428063284
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | -- intersect: 41336802197.792854
[2025-10-19 05:38:04] 2025-10-19 04:37:14,987 | INFO     | current memory leak: -23.47 B/s (using 153 data points, chi2=0.30)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | could have reported an average CPU frequency of 3118 MHz (10 samples)
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | ..............................
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . Timing measurements:
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . get job = 0 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . initial setup = 11 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . payload setup = 7 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . stage-in = 0 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . payload execution = 10897 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . stage-out = 85 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,988 | INFO     | . log creation = 0 s
[2025-10-19 05:38:04] 2025-10-19 04:37:14,989 | INFO     | ..............................
[2025-10-19 05:38:04] 2025-10-19 04:37:15,091 | INFO     | 
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | job summary report
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | --------------------------------------------------
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | PanDA job id: 6848045007
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | task id: 46771637
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | errors: (none)
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | pilot state: finished 
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | transexitcode: 0
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | exeerrorcode: 0
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | exeerrordiag: 
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | exitcode: 0
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | exitmsg: OK
[2025-10-19 05:38:04] 2025-10-19 04:37:15,092 | INFO     | cpuconsumptiontime: 41862 s
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | nevents: 400
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | neventsw: 0
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | pid: 14591
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | pgrp: 14591
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | corecount: 4
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | event service: False
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | sizes: {0: 2348101, 1: 2348956, 3: 2349218, 12: 2349246, 10908: 2378585, 10995: 2387581, 10996: 2387765, 11121: 2387789}
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | --------------------------------------------------
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | 
[2025-10-19 05:38:04] 2025-10-19 04:37:15,093 | INFO     | executing command: ls -lF /home/m/BOINC/slots/0
[2025-10-19 05:38:04] 2025-10-19 04:37:15,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,101 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,101 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | job 6848045007 has completed (purged errors)
[2025-10-19 05:38:04] 2025-10-19 04:37:15,103 | INFO     | overall cleanup function is called
[2025-10-19 05:38:04] 2025-10-19 04:37:16,110 | INFO     | --- collectZombieJob: --- 10, [14591]
[2025-10-19 05:38:04] 2025-10-19 04:37:16,110 | INFO     | zombie collector waiting for pid 14591
[2025-10-19 05:38:04] 2025-10-19 04:37:16,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 05:38:04] 2025-10-19 04:37:16,111 | INFO     | collected zombie processes
[2025-10-19 05:38:04] 2025-10-19 04:37:16,111 | INFO     | will attempt to kill all subprocesses of pid=14591
[2025-10-19 05:38:04] 2025-10-19 04:37:16,192 | INFO     | process IDs to be killed: [14591] (in reverse order)
[2025-10-19 05:38:04] 2025-10-19 04:37:16,218 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 05:38:04] 2025-10-19 04:37:16,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 05:38:04] 2025-10-19 04:37:16,221 | INFO     | did not find any defunct processes belonging to 14591
[2025-10-19 05:38:04] 2025-10-19 04:37:16,223 | INFO     | did not find any defunct processes belonging to 14591
[2025-10-19 05:38:04] 2025-10-19 04:37:16,223 | INFO     | ready for new job
[2025-10-19 05:38:04] 2025-10-19 04:37:16,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 05:38:04] 2025-10-19 04:37:16,224 | INFO     | ***************************************
[2025-10-19 05:38:04] 2025-10-19 04:37:16,225 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 05:38:04] 2025-10-19 04:37:16,225 | INFO     | ***************************************
[2025-10-19 05:38:04] 2025-10-19 04:37:16,225 | INFO     | 
[2025-10-19 05:38:04] 2025-10-19 04:37:16,243 | INFO     | architecture information:
[2025-10-19 05:38:04] 2025-10-19 04:37:16,243 | INFO     | executing command: cat /etc/os-release
[2025-10-19 05:38:04] 2025-10-19 04:37:16,250 | INFO     | cat /etc/os-release:
[2025-10-19 05:38:04] NAME="CentOS Linux"
[2025-10-19 05:38:04] VERSION="7 (Core)"
[2025-10-19 05:38:04] ID="centos"
[2025-10-19 05:38:04] ID_LIKE="rhel fedora"
[2025-10-19 05:38:04] VERSION_ID="7"
[2025-10-19 05:38:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 05:38:04] ANSI_COLOR="0;31"
[2025-10-19 05:38:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 05:38:04] HOME_URL="https://www.centos.org/"
[2025-10-19 05:38:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 05:38:04] 
[2025-10-19 05:38:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 05:38:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 05:38:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 05:38:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 05:38:04] 
[2025-10-19 05:38:04] 2025-10-19 04:37:16,251 | INFO     | ***************************************
[2025-10-19 05:38:04] 2025-10-19 04:37:16,754 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2025-10-19 05:38:04] 2025-10-19 04:37:16,764 | INFO     | sufficient remaining disk space (418872557568 B)
[2025-10-19 05:38:04] 2025-10-19 04:37:16,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 05:38:04] 2025-10-19 04:37:16,765 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 05:38:04] 2025-10-19 04:37:16,765 | INFO     | update_server=False
[2025-10-19 05:38:04] 2025-10-19 04:37:16,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 05:38:04] 2025-10-19 04:37:16,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 05:38:04] 2025-10-19 04:37:16,877 | INFO     | all payload control threads have been joined
[2025-10-19 05:38:04] 2025-10-19 04:37:17,054 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-19 05:38:04] 2025-10-19 04:37:17,055 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-19 05:38:04] 2025-10-19 04:37:17,055 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 05:38:04] 2025-10-19 04:37:17,055 | INFO     | will abort loop
[2025-10-19 05:38:04] 2025-10-19 04:37:17,102 | INFO     | all data control threads have been joined
[2025-10-19 05:38:04] 2025-10-19 04:37:17,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 05:38:04] 2025-10-19 04:37:17,717 | INFO     | all job control threads have been joined
[2025-10-19 05:38:04] 2025-10-19 04:37:17,772 | INFO     | [job] retrieve thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:17,772 | INFO     | [job] queue monitor thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:17,802 | INFO     | [payload] validate_post thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:17,883 | INFO     | [payload] control thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:17,936 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 05:38:04] 2025-10-19 04:37:18,062 | INFO     | [job] job monitor thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,106 | INFO     | [data] control thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,180 | INFO     | [data] copytool_in thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,239 | INFO     | [payload] failed_post thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,498 | INFO     | [job] validate thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,607 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:18,724 | INFO     | [job] control thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:19,126 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:19,241 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:19,335 | INFO     | [data] copytool_out thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:21,943 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 05:38:04] 2025-10-19 04:37:47,445 | INFO     | PID=8220 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-19 05:38:04] 2025-10-19 04:37:47,446 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 05:38:04] 2025-10-19 04:37:47,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 05:38:04] 2025-10-19 04:37:47,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 05:38:04] 2025-10-19 04:37:57,782 | INFO     | [monitor] cgroup control has ended
[2025-10-19 05:38:04] 2025-10-19 04:37:58,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907228968768)>', '<ExcThread(monitor, started 139906781263616)>']
[2025-10-19 05:38:04] 2025-10-19 04:37:59,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 05:38:04] 2025-10-19 04:37:59,507 | INFO     | [monitor] control thread has ended
[2025-10-19 05:38:04] 2025-10-19 04:38:03,895 | INFO     | all workflow threads have been joined
[2025-10-19 05:38:04] 2025-10-19 04:38:03,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 05:38:04] 2025-10-19 04:38:03,896 | INFO     | traces error code: 0
[2025-10-19 05:38:04] 2025-10-19 04:38:03,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 05:38:04] 2025-10-19 04:38:04,002 [wrapper] ==== pilot stdout END ====
[2025-10-19 05:38:04] 2025-10-19 04:38:04,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 05:38:04] 2025-10-19 04:38:04,005 [wrapper] pilotpid: 8220
[2025-10-19 05:38:04] 2025-10-19 04:38:04,007 [wrapper] Pilot exit status: 0
[2025-10-19 05:38:04] 2025-10-19 04:38:04,042 [wrapper] pandaids: 6848045007
[2025-10-19 05:38:04] 2025-10-19 04:38:04,086 [wrapper] cleanup supervisor_pilot  1337 8221
[2025-10-19 05:38:04] 2025-10-19 04:38:04,089 [wrapper] Test setup, not cleaning
[2025-10-19 05:38:04] 2025-10-19 04:38:04,091 [wrapper] apfmon messages muted
[2025-10-19 05:38:04] 2025-10-19 04:38:04,093 [wrapper] ==== wrapper stdout END ====
[2025-10-19 05:38:04] 2025-10-19 04:38:04,095 [wrapper] ==== wrapper stderr END ====
[2025-10-19 05:38:04]  *** Error codes and diagnostics ***
[2025-10-19 05:38:04]     "exeErrorCode": 0,
[2025-10-19 05:38:04]     "exeErrorDiag": "",
[2025-10-19 05:38:04]     "pilotErrorCode": 0,
[2025-10-19 05:38:04]     "pilotErrorDiag": "",
[2025-10-19 05:38:04]  *** Listing of results directory ***
[2025-10-19 05:38:04] total 436404
[2025-10-19 05:38:04] -rw-r--r-- 1 m m    557409 Oct 18 21:42 pilot3.tar.gz
[2025-10-19 05:38:04] -rw-r--r-- 1 m m      5112 Oct 18 21:53 queuedata.json
[2025-10-19 05:38:04] -rwx------ 1 m m     36292 Oct 18 21:54 runpilot2-wrapper.sh
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m       100 Oct 19 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 05:38:04] -rwxr-xr-x 1 m m      7986 Oct 19 02:30 run_atlas
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m       105 Oct 19 02:30 job.xml
[2025-10-19 05:38:04] -rw-r--r-- 2 m m     15120 Oct 19 02:30 start_atlas.sh
[2025-10-19 05:38:04] drwxrwx--x 2 m m      4096 Oct 19 02:30 shared
[2025-10-19 05:38:04] -rw-r--r-- 2 m m    569679 Oct 19 02:30 input.tar.gz
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m      6021 Oct 19 02:30 init_data.xml
[2025-10-19 05:38:04] -rw-r--r-- 2 m m 227348949 Oct 19 02:30 EVNT.46771634._002000.pool.root.1
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m         0 Oct 19 02:30 boinc_lockfile
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m      2558 Oct 19 02:31 pandaJob.out
[2025-10-19 05:38:04] -rw------- 1 m m    976750 Oct 19 02:31 agis_schedconf.cvmfs.json
[2025-10-19 05:38:04] drwx------ 5 m m      4096 Oct 19 02:31 pilot3
[2025-10-19 05:38:04] -rw------- 1 m m 211743820 Oct 19 05:33 HITS.46771637._047513.pool.root.1
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m       530 Oct 19 05:33 boinc_task_state.xml
[2025-10-19 05:38:04] -rw------- 1 m m      1042 Oct 19 05:33 memory_monitor_summary.json
[2025-10-19 05:38:04] -rw------- 1 m m   1560740 Oct 19 05:35 agis_ddmendpoints.agis.ALL.json
[2025-10-19 05:38:04] -rw------- 1 m m    364652 Oct 19 05:35 log.46771637._047513.job.log.tgz.1
[2025-10-19 05:38:04] -rw------- 1 m m      7789 Oct 19 05:37 heartbeat.json
[2025-10-19 05:38:04] -rw------- 1 m m        95 Oct 19 05:37 pilot_heartbeat.json
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m      8192 Oct 19 05:38 boinc_mmap_file
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m        28 Oct 19 05:38 wrapper_checkpoint.txt
[2025-10-19 05:38:04] -rw------- 1 m m      4931 Oct 19 05:38 pilotlog.txt
[2025-10-19 05:38:04] -rw------- 1 m m   1569372 Oct 19 05:38 log.46771637._047513.job.log.1
[2025-10-19 05:38:04] -rw------- 1 m m       357 Oct 19 05:38 output.list
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m       620 Oct 19 05:38 runtime_log
[2025-10-19 05:38:04] -rw------- 1 m m   1955840 Oct 19 05:38 result.tar.gz
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m      8618 Oct 19 05:38 runtime_log.err
[2025-10-19 05:38:04] -rw------- 1 m m       645 Oct 19 05:38 MSMKDmV7SU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmy2cMDm44b1sm.diag
[2025-10-19 05:38:04] -rw-rw-r-- 1 m m     20776 Oct 19 05:38 stderr.txt
[2025-10-19 05:38:04] HITS file was successfully produced:
[2025-10-19 05:38:04] -rw------- 1 m m 211743820 Oct 19 05:33 shared/HITS.pool.root.1
[2025-10-19 05:38:04]  *** Contents of shared directory: ***
[2025-10-19 05:38:04] total 431304
[2025-10-19 05:38:04] -rw-r--r-- 2 m m     15120 Oct 19 02:30 start_atlas.sh
[2025-10-19 05:38:04] -rw-r--r-- 2 m m    569679 Oct 19 02:30 input.tar.gz
[2025-10-19 05:38:04] -rw-r--r-- 2 m m 227348949 Oct 19 02:30 ATLAS.root_0
[2025-10-19 05:38:04] -rw------- 1 m m 211743820 Oct 19 05:33 HITS.pool.root.1
[2025-10-19 05:38:04] -rw------- 1 m m   1955840 Oct 19 05:38 result.tar.gz
05:38:05 (3962): run_atlas exited; CPU time 41974.853952
05:38:05 (3962): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN