Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:43:30 (1299): wrapper (7.7.26015): starting
20:43:30 (1299): wrapper: running run_atlas (--nthreads 8)
[2025-10-18 20:43:30] Arguments: --nthreads 8
[2025-10-18 20:43:30] Threads: 8
[2025-10-18 20:43:30] Checking for CVMFS
[2025-10-18 20:43:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 20:43:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 20:43:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 20:43:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 20:43:31] 2.11.2.0 2876 10293 78920 151869 2 58 19614764 20275200 1 130560 0 5753284 99.969 659867 39406 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 20:43:31] CVMFS is ok
[2025-10-18 20:43:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 20:43:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 20:43:31] Further information can be found at the LHC@home message board.
[2025-10-18 20:43:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 20:43:31] Checking for apptainer binary...
[2025-10-18 20:43:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 20:43:31] Running /usr/bin/apptainer --version
[2025-10-18 20:43:31] apptainer version 1.3.2-1.el7
[2025-10-18 20:43:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 20:43:32] c-204-40.aglt2.org
[2025-10-18 20:43:32] apptainer works
[2025-10-18 20:43:32] Set ATHENA_PROC_NUMBER=8
[2025-10-18 20:43:32] Set ATHENA_CORE_NUMBER=8
[2025-10-18 20:43:32] Starting ATLAS job with PandaID=6850384196
[2025-10-18 20:43:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 22:25:20]  *** The last 200 lines of the pilot log: ***
[2025-10-18 22:25:20] 2025-10-19 02:24:39,441 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 22:25:20] 2025-10-19 02:24:39,442 | INFO     | summary of transferred files:
[2025-10-18 22:25:20] 2025-10-19 02:24:39,442 | INFO     |  -- lfn=log.46808902._003224.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 22:25:20] 2025-10-19 02:24:39,442 | INFO     | stage-out finished correctly
[2025-10-18 22:25:20] 2025-10-19 02:24:39,666 | INFO     | PID=5118 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-18 22:25:20] 2025-10-19 02:24:40,666 | INFO     | time since job start (6050s) is within the limit (172800.0s)
[2025-10-18 22:25:20] 2025-10-19 02:24:41,016 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 22:25:20] 2025-10-19 02:24:41,736 | INFO     | job 6850384196 has state=finished
[2025-10-18 22:25:20] 2025-10-19 02:24:41,736 | INFO     | preparing for final server update for job 6850384196 in state='finished'
[2025-10-18 22:25:20] 2025-10-19 02:24:41,737 | INFO     | this job has now completed (state=finished)
[2025-10-18 22:25:20] 2025-10-19 02:24:41,737 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 22:25:20] 2025-10-19 02:24:41,738 | INFO     | log transfer has been attempted: DONE
[2025-10-18 22:25:20] 2025-10-19 02:24:41,738 | INFO     | job 6850384196 has finished - writing final server update
[2025-10-18 22:25:20] 2025-10-19 02:24:41,738 | INFO     | total number of processed events: 400 (read)
[2025-10-18 22:25:20] 2025-10-19 02:24:41,740 | INFO     | executing command: lscpu
[2025-10-18 22:25:20] 2025-10-19 02:24:41,770 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 22:25:20] 2025-10-19 02:24:42,668 | INFO     | time since job start (6052s) is within the limit (172800.0s)
[2025-10-18 22:25:20] 2025-10-19 02:24:44,673 | INFO     | time since job start (6054s) is within the limit (172800.0s)
[2025-10-18 22:25:20] 2025-10-19 02:24:44,821 | WARNING  | process 11641 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 22:25:20] 2025-10-19 02:24:44,822 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6850384196/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 22:25:20] 2025-10-19 02:24:44,823 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6850384196/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 22:25:20] 2025-10-19 02:24:44,823 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-18 22:25:20] 2025-10-19 02:24:44,823 | WARNING  | maxPSS not found in memory monitor output
[2025-10-18 22:25:20] 2025-10-19 02:24:44,824 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2893987 B
[2025-10-18 22:25:20] 2025-10-19 02:24:44,824 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15386 B
[2025-10-18 22:25:20] 2025-10-19 02:24:44,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-18 22:25:20] 2025-10-19 02:24:46,678 | INFO     | time since job start (6056s) is within the limit (172800.0s)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,448 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-18 22:25:20] 2025-10-19 02:24:47,456 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-10-18 22:25:20] 2025-10-19 02:24:47,459 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6850384196/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,460 | INFO     | extracted standard info from prmon json
[2025-10-18 22:25:20] 2025-10-19 02:24:47,460 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 22:25:20] 2025-10-19 02:24:47,460 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 22:25:20] 2025-10-19 02:24:47,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 22:25:20] 2025-10-19 02:24:47,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 22:25:20] 2025-10-19 02:24:47,464 | INFO     | fitting pss+swap vs Time
[2025-10-18 22:25:20] 2025-10-19 02:24:47,464 | INFO     | sum of square deviations: 241429643.0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,465 | INFO     | sum of deviations: -11542438788.0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,465 | INFO     | mean x: 1760837742.5
[2025-10-18 22:25:20] 2025-10-19 02:24:47,465 | INFO     | mean y: 2548746.347826087
[2025-10-18 22:25:20] 2025-10-19 02:24:47,465 | INFO     | -- intersect: 84185922444.19302
[2025-10-18 22:25:20] 2025-10-19 02:24:47,465 | INFO     | intersect: 84185922444.19302
[2025-10-18 22:25:20] 2025-10-19 02:24:47,466 | INFO     | chi2: 0.11617688395138762
[2025-10-18 22:25:20] 2025-10-19 02:24:47,466 | INFO     | -- intersect: 84185922444.19302
[2025-10-18 22:25:20] 2025-10-19 02:24:47,466 | INFO     | current memory leak: -47.81 B/s (using 92 data points, chi2=0.12)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,466 | INFO     | could have reported an average CPU frequency of 1955 MHz (7 samples)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,466 | INFO     | ..............................
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . Timing measurements:
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . get job = 0 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . initial setup = 2 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . payload setup = 8 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . stage-in = 0 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . payload execution = 6019 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . stage-out = 0 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,467 | INFO     | . log creation = 0 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,468 | INFO     | ..............................
[2025-10-18 22:25:20] 2025-10-19 02:24:47,479 | INFO     | sufficient remaining disk space (18658361344 B)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,495 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,566 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6850384196: 3202496 B (within 2537553920 B limit)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,566 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6850384196/HITS.46808902._003224.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,566 | INFO     | total size of present files: 0 B (workdir size: 3202496 B)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,566 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6850384196/HITS.46808902._003224.pool.root.1 since it does not exist
[2025-10-18 22:25:20] 2025-10-19 02:24:47,659 | INFO     | number of running child processes to parent process 11641: 1
[2025-10-18 22:25:20] 2025-10-19 02:24:47,659 | INFO     | maximum number of monitored processes: 6
[2025-10-18 22:25:20] 2025-10-19 02:24:47,659 | INFO     | aborting job monitoring since job object (job id=6850384196) has expired
[2025-10-18 22:25:20] 2025-10-19 02:24:47,770 | INFO     | 
[2025-10-18 22:25:20] 2025-10-19 02:24:47,770 | INFO     | job summary report
[2025-10-18 22:25:20] 2025-10-19 02:24:47,771 | INFO     | --------------------------------------------------
[2025-10-18 22:25:20] 2025-10-19 02:24:47,771 | INFO     | PanDA job id: 6850384196
[2025-10-18 22:25:20] 2025-10-19 02:24:47,771 | INFO     | task id: 46808902
[2025-10-18 22:25:20] 2025-10-19 02:24:47,771 | INFO     | errors: (none)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 22:25:20] 2025-10-19 02:24:47,771 | INFO     | pilot state: finished 
[2025-10-18 22:25:20] 2025-10-19 02:24:47,772 | INFO     | transexitcode: 0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,772 | INFO     | exeerrorcode: 0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,772 | INFO     | exeerrordiag: 
[2025-10-18 22:25:20] 2025-10-19 02:24:47,772 | INFO     | exitcode: 0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,772 | INFO     | exitmsg: OK
[2025-10-18 22:25:20] 2025-10-19 02:24:47,773 | INFO     | cpuconsumptiontime: 44340 s
[2025-10-18 22:25:20] 2025-10-19 02:24:47,773 | INFO     | nevents: 400
[2025-10-18 22:25:20] 2025-10-19 02:24:47,773 | INFO     | neventsw: 0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,773 | INFO     | pid: 11641
[2025-10-18 22:25:20] 2025-10-19 02:24:47,773 | INFO     | pgrp: 11641
[2025-10-18 22:25:20] 2025-10-19 02:24:47,773 | INFO     | corecount: 8
[2025-10-18 22:25:20] 2025-10-19 02:24:47,774 | INFO     | event service: False
[2025-10-18 22:25:20] 2025-10-19 02:24:47,774 | INFO     | sizes: {0: 2348847, 6: 2349109, 11: 2349137, 6031: 2375852, 6032: 2384850, 6033: 2384906, 6040: 2385228}
[2025-10-18 22:25:20] 2025-10-19 02:24:47,774 | INFO     | --------------------------------------------------
[2025-10-18 22:25:20] 2025-10-19 02:24:47,774 | INFO     | 
[2025-10-18 22:25:20] 2025-10-19 02:24:47,774 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-18 22:25:20] 2025-10-19 02:24:47,804 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,804 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,805 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,807 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,807 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,807 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,807 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,807 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 22:25:20] 2025-10-19 02:24:47,808 | INFO     | job 6850384196 has completed (purged errors)
[2025-10-18 22:25:20] 2025-10-19 02:24:47,808 | INFO     | overall cleanup function is called
[2025-10-18 22:25:20] 2025-10-19 02:24:48,816 | INFO     | --- collectZombieJob: --- 10, [11641]
[2025-10-18 22:25:20] 2025-10-19 02:24:48,816 | INFO     | zombie collector waiting for pid 11641
[2025-10-18 22:25:20] 2025-10-19 02:24:48,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 22:25:20] 2025-10-19 02:24:48,817 | INFO     | collected zombie processes
[2025-10-18 22:25:20] 2025-10-19 02:24:48,817 | INFO     | will attempt to kill all subprocesses of pid=11641
[2025-10-18 22:25:20] 2025-10-19 02:24:48,909 | INFO     | process IDs to be killed: [11641] (in reverse order)
[2025-10-18 22:25:20] 2025-10-19 02:24:48,967 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 22:25:20] 2025-10-19 02:24:48,968 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 22:25:20] 2025-10-19 02:24:48,972 | INFO     | did not find any defunct processes belonging to 11641
[2025-10-18 22:25:20] 2025-10-19 02:24:48,976 | INFO     | did not find any defunct processes belonging to 11641
[2025-10-18 22:25:20] 2025-10-19 02:24:48,976 | INFO     | ready for new job
[2025-10-18 22:25:20] 2025-10-19 02:24:48,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 22:25:20] 2025-10-19 02:24:48,978 | INFO     | ***************************************
[2025-10-18 22:25:20] 2025-10-19 02:24:48,978 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 22:25:20] 2025-10-19 02:24:48,978 | INFO     | ***************************************
[2025-10-18 22:25:20] 2025-10-19 02:24:48,978 | INFO     | 
[2025-10-18 22:25:20] 2025-10-19 02:24:48,978 | INFO     | architecture information:
[2025-10-18 22:25:20] 2025-10-19 02:24:48,979 | INFO     | executing command: cat /etc/os-release
[2025-10-18 22:25:20] 2025-10-19 02:24:48,998 | INFO     | cat /etc/os-release:
[2025-10-18 22:25:20] NAME="CentOS Linux"
[2025-10-18 22:25:20] VERSION="7 (Core)"
[2025-10-18 22:25:20] ID="centos"
[2025-10-18 22:25:20] ID_LIKE="rhel fedora"
[2025-10-18 22:25:20] VERSION_ID="7"
[2025-10-18 22:25:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 22:25:20] ANSI_COLOR="0;31"
[2025-10-18 22:25:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 22:25:20] HOME_URL="https://www.centos.org/"
[2025-10-18 22:25:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 22:25:20] 
[2025-10-18 22:25:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 22:25:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 22:25:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 22:25:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 22:25:20] 
[2025-10-18 22:25:20] 2025-10-19 02:24:48,999 | INFO     | ***************************************
[2025-10-18 22:25:20] 2025-10-19 02:24:49,501 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-18 22:25:20] 2025-10-19 02:24:49,522 | INFO     | sufficient remaining disk space (18662555648 B)
[2025-10-18 22:25:20] 2025-10-19 02:24:49,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 22:25:20] 2025-10-19 02:24:49,522 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 22:25:20] 2025-10-19 02:24:49,523 | INFO     | update_server=False
[2025-10-18 22:25:20] 2025-10-19 02:24:49,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 22:25:20] 2025-10-19 02:24:49,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 22:25:20] 2025-10-19 02:24:49,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 22:25:20] 2025-10-19 02:24:49,525 | INFO     | aborting loop
[2025-10-18 22:25:20] 2025-10-19 02:24:49,760 | INFO     | all job control threads have been joined
[2025-10-18 22:25:20] 2025-10-19 02:24:49,772 | INFO     | all data control threads have been joined
[2025-10-18 22:25:20] 2025-10-19 02:24:50,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 22:25:20] 2025-10-19 02:24:50,527 | INFO     | [job] queue monitor thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,528 | INFO     | [job] retrieve thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,529 | INFO     | [job] job monitor thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,754 | INFO     | [payload] failed_post thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,766 | INFO     | [job] control thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,778 | INFO     | [data] control thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,833 | INFO     | [payload] validate_post thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:50,972 | INFO     | all payload control threads have been joined
[2025-10-18 22:25:20] 2025-10-19 02:24:51,408 | INFO     | [job] validate thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:51,408 | INFO     | [data] copytool_in thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:51,554 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:51,580 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:51,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 22:25:20] 2025-10-19 02:24:51,639 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:51,902 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:51,978 | INFO     | [payload] control thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:52,063 | INFO     | [data] copytool_out thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:55,618 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 22:25:20] 2025-10-19 02:24:59,447 | INFO     | [monitor] cgroup control has ended
[2025-10-18 22:25:20] 2025-10-19 02:24:59,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697144366912)>', '<ExcThread(monitor, started 139696495654656)>']
[2025-10-18 22:25:20] 2025-10-19 02:25:04,594 | INFO     | all workflow threads have been joined
[2025-10-18 22:25:20] 2025-10-19 02:25:04,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 22:25:20] 2025-10-19 02:25:04,595 | INFO     | traces error code: 0
[2025-10-18 22:25:20] 2025-10-19 02:25:04,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 22:25:20] 2025-10-19 02:25:19,897 | INFO     | PID=5118 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-18 22:25:20] 2025-10-19 02:25:19,899 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 22:25:20] 2025-10-19 02:25:19,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 22:25:20] 2025-10-19 02:25:19,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 22:25:20] 2025-10-19 02:25:19,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 22:25:20] 2025-10-19 02:25:19,899 | CRITICAL | thread 'MainThread' is not alive
[2025-10-18 22:25:20] 2025-10-19 02:25:19,900 | INFO     | [monitor] control thread has ended
[2025-10-18 22:25:20] 2025-10-19 02:25:20,024 [wrapper] ==== pilot stdout END ====
[2025-10-18 22:25:20] 2025-10-19 02:25:20,028 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 22:25:20] 2025-10-19 02:25:20,033 [wrapper] pilotpid: 5118
[2025-10-18 22:25:20] 2025-10-19 02:25:20,037 [wrapper] Pilot exit status: 0
[2025-10-18 22:25:20] 2025-10-19 02:25:20,055 [wrapper] pandaids: 6850384196
[2025-10-18 22:25:20] 2025-10-19 02:25:20,100 [wrapper] cleanup supervisor_pilot  5894 5119
[2025-10-18 22:25:20] 2025-10-19 02:25:20,104 [wrapper] Test setup, not cleaning
[2025-10-18 22:25:20] 2025-10-19 02:25:20,109 [wrapper] apfmon messages muted
[2025-10-18 22:25:20] 2025-10-19 02:25:20,114 [wrapper] ==== wrapper stdout END ====
[2025-10-18 22:25:20] 2025-10-19 02:25:20,119 [wrapper] ==== wrapper stderr END ====
[2025-10-18 22:25:20]  *** Error codes and diagnostics ***
[2025-10-18 22:25:20]     "exeErrorCode": 0,
[2025-10-18 22:25:20]     "exeErrorDiag": "",
[2025-10-18 22:25:20]     "pilotErrorCode": 0,
[2025-10-18 22:25:20]     "pilotErrorDiag": "",
[2025-10-18 22:25:20]  *** Listing of results directory ***
[2025-10-18 22:25:20] total 333768
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 18 12:53 pilot3.tar.gz
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 18 13:06 queuedata.json
[2025-10-18 22:25:20] -rwx------ 1 boincer umatlas     36292 Oct 18 13:06 runpilot2-wrapper.sh
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas       100 Oct 18 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 22:25:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 18 20:43 run_atlas
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas       105 Oct 18 20:43 job.xml
[2025-10-18 22:25:20] -rw-r--r-- 2 boincer umatlas 190658996 Oct 18 20:43 EVNT.46808900._000165.pool.root.1
[2025-10-18 22:25:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 20:43 start_atlas.sh
[2025-10-18 22:25:20] drwxrwx--x 2 boincer umatlas      4096 Oct 18 20:43 shared
[2025-10-18 22:25:20] -rw-r--r-- 2 boincer umatlas    569670 Oct 18 20:43 input.tar.gz
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas         0 Oct 18 20:43 boinc_lockfile
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas      2502 Oct 18 20:43 pandaJob.out
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas    976750 Oct 18 20:43 agis_schedconf.cvmfs.json
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas   1560740 Oct 18 20:43 agis_ddmendpoints.agis.ALL.json
[2025-10-18 22:25:20] drwx------ 5 boincer umatlas      4096 Oct 18 20:43 pilot3
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas      5909 Oct 18 22:20 init_data.xml
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas 144846428 Oct 18 22:24 HITS.46808902._003224.pool.root.1
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas       530 Oct 18 22:24 boinc_task_state.xml
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas      1049 Oct 18 22:24 memory_monitor_summary.json
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas    330158 Oct 18 22:24 log.46808902._003224.job.log.tgz.1
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas      7841 Oct 18 22:24 heartbeat.json
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas        27 Oct 18 22:25 wrapper_checkpoint.txt
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 18 22:25 boinc_mmap_file
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas        95 Oct 18 22:25 pilot_heartbeat.json
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas       814 Oct 18 22:25 pilotlog.txt
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas    859792 Oct 18 22:25 log.46808902._003224.job.log.1
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas       357 Oct 18 22:25 output.list
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas       620 Oct 18 22:25 runtime_log
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas   1208320 Oct 18 22:25 result.tar.gz
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas      8703 Oct 18 22:25 runtime_log.err
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas       658 Oct 18 22:25 BI5LDm0YPU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvbcMDm3pquwn.diag
[2025-10-18 22:25:20] -rw-r--r-- 1 boincer umatlas     22467 Oct 18 22:25 stderr.txt
[2025-10-18 22:25:20] HITS file was successfully produced:
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas 144846428 Oct 18 22:24 shared/HITS.pool.root.1
[2025-10-18 22:25:20]  *** Contents of shared directory: ***
[2025-10-18 22:25:20] total 329404
[2025-10-18 22:25:20] -rw-r--r-- 2 boincer umatlas 190658996 Oct 18 20:43 ATLAS.root_0
[2025-10-18 22:25:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 20:43 start_atlas.sh
[2025-10-18 22:25:20] -rw-r--r-- 2 boincer umatlas    569670 Oct 18 20:43 input.tar.gz
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas 144846428 Oct 18 22:24 HITS.pool.root.1
[2025-10-18 22:25:20] -rw------- 1 boincer umatlas   1208320 Oct 18 22:25 result.tar.gz
22:25:22 (1299): run_atlas exited; CPU time 44304.913987
22:25:22 (1299): called boinc_finish(0)

</stderr_txt>
]]>

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