Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:29:09 (3762018): wrapper (7.7.26015): starting
00:29:09 (3762018): wrapper: running run_atlas (--nthreads 4)
[2025-10-21 00:29:09] Arguments: --nthreads 4
[2025-10-21 00:29:09] Threads: 4
[2025-10-21 00:29:09] Checking for CVMFS
[2025-10-21 00:29:09] No cvmfs_config command found, will try listing directly
[2025-10-21 00:29:09] CVMFS is ok
[2025-10-21 00:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 00:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 00:29:09] Further information can be found at the LHC@home message board.
[2025-10-21 00:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 00:29:09] Checking for apptainer binary...
[2025-10-21 00:29:09] which: no apptainer in ((null))
[2025-10-21 00:29:09] apptainer is not installed, using version from CVMFS
[2025-10-21 00:29:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 00:29:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-10-21 00:29:10] apptainer works
[2025-10-21 00:29:10] Set ATHENA_PROC_NUMBER=4
[2025-10-21 00:29:10] Set ATHENA_CORE_NUMBER=4
[2025-10-21 00:29:10] Starting ATLAS job with PandaID=6850529823
[2025-10-21 00:29:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 02:41:22]  *** The last 200 lines of the pilot log: ***
[2025-10-21 02:41:22] 2025-10-21 00:30:39,666 | INFO     | time since job start (7275s) is within the limit (172800.0s)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,123 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 02:41:22] 2025-10-21 00:30:40,144 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2717.233984375
[2025-10-21 02:41:22] 2025-10-21 00:30:40,168 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6850529823/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,169 | INFO     | extracted standard info from prmon json
[2025-10-21 02:41:22] 2025-10-21 00:30:40,169 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 02:41:22] 2025-10-21 00:30:40,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 02:41:22] 2025-10-21 00:30:40,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 02:41:22] 2025-10-21 00:30:40,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 02:41:22] 2025-10-21 00:30:40,172 | INFO     | fitting pss+swap vs Time
[2025-10-21 02:41:22] 2025-10-21 00:30:40,173 | INFO     | sum of square deviations: 522502820.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,173 | INFO     | sum of deviations: -21494761906.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,173 | INFO     | mean x: 1761002996.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,173 | INFO     | mean y: 2417831.7647058824
[2025-10-21 02:41:22] 2025-10-21 00:30:40,174 | INFO     | -- intersect: 72446696916.7516
[2025-10-21 02:41:22] 2025-10-21 00:30:40,174 | INFO     | intersect: 72446696916.7516
[2025-10-21 02:41:22] 2025-10-21 00:30:40,174 | INFO     | chi2: 1.4717602762431372
[2025-10-21 02:41:22] 2025-10-21 00:30:40,174 | INFO     | sum of square deviations: 459366752.5
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | sum of deviations: -19741518999.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | mean x: 1761002843.5
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | mean y: 2422068.298245614
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | -- intersect: 75682411756.38145
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | intersect: 75682411756.38145
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | chi2: 1.4649238058863367
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | current chi2=1.4649238058863367 (change=0.46450977561722595 %)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,175 | INFO     | right removable region: 113
[2025-10-21 02:41:22] 2025-10-21 00:30:40,176 | INFO     | sum of square deviations: 459366752.5
[2025-10-21 02:41:22] 2025-10-21 00:30:40,176 | INFO     | sum of deviations: -33743974998.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,176 | INFO     | mean x: 1761003148.5
[2025-10-21 02:41:22] 2025-10-21 00:30:40,177 | INFO     | mean y: 2446533.947368421
[2025-10-21 02:41:22] 2025-10-21 00:30:40,177 | INFO     | -- intersect: 129361495465.95139
[2025-10-21 02:41:22] 2025-10-21 00:30:40,177 | INFO     | intersect: 129361495465.95139
[2025-10-21 02:41:22] 2025-10-21 00:30:40,177 | INFO     | chi2: 0.1872435561902153
[2025-10-21 02:41:22] 2025-10-21 00:30:40,177 | INFO     | current chi2=0.1872435561902153 (change=87.277577794926 %)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,177 | INFO     | sum of square deviations: 401533110.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,178 | INFO     | sum of deviations: -29545896499.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,178 | INFO     | mean x: 1761003301.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,178 | INFO     | mean y: 2435441.5045871558
[2025-10-21 02:41:22] 2025-10-21 00:30:40,178 | INFO     | -- intersect: 129581839903.92448
[2025-10-21 02:41:22] 2025-10-21 00:30:40,178 | INFO     | intersect: 129581839903.92448
[2025-10-21 02:41:22] 2025-10-21 00:30:40,178 | INFO     | chi2: 0.18700089580953594
[2025-10-21 02:41:22] 2025-10-21 00:30:40,179 | INFO     | current chi2=0.18700089580953594 (change=0.12959611834804247 %)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,179 | INFO     | left removable region: 20
[2025-10-21 02:41:22] 2025-10-21 00:30:40,179 | INFO     | sum of square deviations: 249388862.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,179 | INFO     | sum of deviations: -18834372566.000004
[2025-10-21 02:41:22] 2025-10-21 00:30:40,179 | INFO     | mean x: 1761003423.0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,180 | INFO     | mean y: 2413198.946236559
[2025-10-21 02:41:22] 2025-10-21 00:30:40,180 | INFO     | -- intersect: 132997103871.15157
[2025-10-21 02:41:22] 2025-10-21 00:30:40,180 | INFO     | intersect: 132997103871.15157
[2025-10-21 02:41:22] 2025-10-21 00:30:40,180 | INFO     | chi2: 0.1651112133590194
[2025-10-21 02:41:22] 2025-10-21 00:30:40,180 | INFO     | -- intersect: 132997103871.15157
[2025-10-21 02:41:22] 2025-10-21 00:30:40,180 | INFO     | current memory leak: -75.52 B/s (using 93 data points, chi2=0.17)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | could have reported an average CPU frequency of 2700 MHz (8 samples)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | ..............................
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . Timing measurements:
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . get job = 0 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . initial setup = 1 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . payload setup = 8 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . stage-in = 0 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . payload execution = 7233 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . stage-out = 0 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | . log creation = 0 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,181 | INFO     | ..............................
[2025-10-21 02:41:22] 2025-10-21 00:30:40,285 | INFO     | 
[2025-10-21 02:41:22] 2025-10-21 00:30:40,285 | INFO     | job summary report
[2025-10-21 02:41:22] 2025-10-21 00:30:40,285 | INFO     | --------------------------------------------------
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | PanDA job id: 6850529823
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | task id: 46808902
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | errors: (none)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | pilot state: finished 
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | transexitcode: 0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | exeerrorcode: 0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | exeerrordiag: 
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | exitcode: 0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | exitmsg: OK
[2025-10-21 02:41:22] 2025-10-21 00:30:40,286 | INFO     | cpuconsumptiontime: 27470 s
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | nevents: 400
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | neventsw: 0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | pid: 3773347
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | pgrp: 3773347
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | corecount: 4
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | event service: False
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | sizes: {0: 2348860, 7: 2349122, 11: 2349150, 7246: 2377005, 7247: 2386025, 7250: 2386081, 7258: 2386233}
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | --------------------------------------------------
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | 
[2025-10-21 02:41:22] 2025-10-21 00:30:40,287 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-10-21 02:41:22] 2025-10-21 00:30:40,319 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,320 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,321 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,322 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 02:41:22] 2025-10-21 00:30:40,322 | INFO     | job 6850529823 has completed (purged errors)
[2025-10-21 02:41:22] 2025-10-21 00:30:40,322 | INFO     | overall cleanup function is called
[2025-10-21 02:41:22] 2025-10-21 00:30:41,331 | INFO     | --- collectZombieJob: --- 10, [3773347]
[2025-10-21 02:41:22] 2025-10-21 00:30:41,331 | INFO     | zombie collector waiting for pid 3773347
[2025-10-21 02:41:22] 2025-10-21 00:30:41,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 02:41:22] 2025-10-21 00:30:41,332 | INFO     | collected zombie processes
[2025-10-21 02:41:22] 2025-10-21 00:30:41,333 | INFO     | will attempt to kill all subprocesses of pid=3773347
[2025-10-21 02:41:22] 2025-10-21 00:30:42,010 | INFO     | PID=3766038 has CPU usage=18.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-21 02:41:22] 2025-10-21 00:30:42,010 | INFO     | .. there are 11 such processes running
[2025-10-21 02:41:22] 2025-10-21 00:30:42,507 | INFO     | process IDs to be killed: [3773347] (in reverse order)
[2025-10-21 02:41:22] 2025-10-21 00:30:42,778 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 02:41:22] 2025-10-21 00:30:42,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 02:41:22] 2025-10-21 00:30:42,811 | INFO     | did not find any defunct processes belonging to 3773347
[2025-10-21 02:41:22] 2025-10-21 00:30:42,841 | INFO     | did not find any defunct processes belonging to 3773347
[2025-10-21 02:41:22] 2025-10-21 00:30:42,842 | INFO     | ready for new job
[2025-10-21 02:41:22] 2025-10-21 00:30:42,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 02:41:22] 2025-10-21 00:30:42,844 | INFO     | ***************************************
[2025-10-21 02:41:22] 2025-10-21 00:30:42,844 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 02:41:22] 2025-10-21 00:30:42,845 | INFO     | ***************************************
[2025-10-21 02:41:22] 2025-10-21 00:30:42,845 | INFO     | 
[2025-10-21 02:41:22] 2025-10-21 00:30:42,853 | INFO     | architecture information:
[2025-10-21 02:41:22] 2025-10-21 00:30:42,853 | INFO     | executing command: cat /etc/os-release
[2025-10-21 02:41:22] 2025-10-21 00:30:42,878 | INFO     | cat /etc/os-release:
[2025-10-21 02:41:22] NAME="CentOS Linux"
[2025-10-21 02:41:22] VERSION="7 (Core)"
[2025-10-21 02:41:22] ID="centos"
[2025-10-21 02:41:22] ID_LIKE="rhel fedora"
[2025-10-21 02:41:22] VERSION_ID="7"
[2025-10-21 02:41:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 02:41:22] ANSI_COLOR="0;31"
[2025-10-21 02:41:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 02:41:22] HOME_URL="https://www.centos.org/"
[2025-10-21 02:41:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 02:41:22] 
[2025-10-21 02:41:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 02:41:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 02:41:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 02:41:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 02:41:22] 
[2025-10-21 02:41:22] 2025-10-21 00:30:42,879 | INFO     | ***************************************
[2025-10-21 02:41:22] 2025-10-21 00:30:43,381 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-10-21 02:41:22] 2025-10-21 00:30:43,408 | INFO     | sufficient remaining disk space (3344971071488 B)
[2025-10-21 02:41:22] 2025-10-21 00:30:43,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 02:41:22] 2025-10-21 00:30:43,408 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 02:41:22] 2025-10-21 00:30:43,408 | INFO     | update_server=False
[2025-10-21 02:41:22] 2025-10-21 00:30:43,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 02:41:22] 2025-10-21 00:30:43,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 02:41:22] 2025-10-21 00:30:43,647 | INFO     | all data control threads have been joined
[2025-10-21 02:41:22] 2025-10-21 00:30:43,866 | INFO     | all payload control threads have been joined
[2025-10-21 02:41:22] 2025-10-21 00:30:43,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 02:41:22] 2025-10-21 00:30:43,883 | INFO     | aborting loop
[2025-10-21 02:41:22] 2025-10-21 00:30:44,267 | INFO     | all job control threads have been joined
[2025-10-21 02:41:22] 2025-10-21 00:30:44,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 02:41:22] 2025-10-21 00:30:44,413 | INFO     | [job] retrieve thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:44,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:44,652 | INFO     | [data] control thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:44,668 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:44,869 | INFO     | [payload] control thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:44,876 | INFO     | [payload] validate_post thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:44,888 | INFO     | [job] job monitor thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:45,272 | INFO     | [job] control thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:45,277 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:45,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 02:41:22] 2025-10-21 00:30:45,479 | INFO     | [payload] failed_post thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:45,605 | INFO     | [data] copytool_in thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:45,808 | INFO     | [job] validate thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:45,863 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:46,301 | INFO     | [job] queue monitor thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:46,312 | INFO     | [data] copytool_out thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:30:47,414 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 02:41:22] 2025-10-21 00:31:15,045 | INFO     | PID=3766038 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 02:41:22] 2025-10-21 00:31:15,045 | INFO     | .. there are 11 such processes running
[2025-10-21 02:41:22] 2025-10-21 00:31:15,046 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 02:41:22] 2025-10-21 00:31:15,046 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 02:41:22] 2025-10-21 00:31:15,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 02:41:22] 2025-10-21 00:31:35,666 | INFO     | [monitor] cgroup control has ended
[2025-10-21 02:41:22] 2025-10-21 00:31:36,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22876966975296)>', '<ExcThread(monitor, started 22876656727808)>']
[2025-10-21 02:41:22] 2025-10-21 00:31:36,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 02:41:22] 2025-10-21 00:31:36,152 | INFO     | [monitor] control thread has ended
[2025-10-21 02:41:22] 2025-10-21 00:31:41,152 | INFO     | all workflow threads have been joined
[2025-10-21 02:41:22] 2025-10-21 00:31:41,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 02:41:22] 2025-10-21 00:31:41,153 | INFO     | traces error code: 0
[2025-10-21 02:41:22] 2025-10-21 00:31:41,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 02:41:22] 2025-10-21 00:31:41,333 [wrapper] ==== pilot stdout END ====
[2025-10-21 02:41:22] 2025-10-21 00:31:41,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 02:41:22] 2025-10-21 00:31:41,341 [wrapper] pilotpid: 3766038
[2025-10-21 02:41:22] 2025-10-21 00:31:41,345 [wrapper] Pilot exit status: 0
[2025-10-21 02:41:22] 2025-10-21 00:31:41,360 [wrapper] pandaids: 6850529823
[2025-10-21 02:41:22] 2025-10-21 00:31:41,539 [wrapper] cleanup supervisor_pilot 4097765 3766039
[2025-10-21 02:41:22] 2025-10-21 00:31:41,544 [wrapper] Test setup, not cleaning
[2025-10-21 02:41:22] 2025-10-21 00:31:41,547 [wrapper] apfmon messages muted
[2025-10-21 02:41:22] 2025-10-21 00:31:41,550 [wrapper] ==== wrapper stdout END ====
[2025-10-21 02:41:22] 2025-10-21 00:31:41,554 [wrapper] ==== wrapper stderr END ====
[2025-10-21 02:41:22]  *** Error codes and diagnostics ***
[2025-10-21 02:41:22]     "exeErrorCode": 0,
[2025-10-21 02:41:22]     "exeErrorDiag": "",
[2025-10-21 02:41:22]     "pilotErrorCode": 0,
[2025-10-21 02:41:22]     "pilotErrorDiag": "",
[2025-10-21 02:41:22]  *** Listing of results directory ***
[2025-10-21 02:41:22] total 331852
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc    557409 Oct 18 21:29 pilot3.tar.gz
[2025-10-21 02:41:22] -rwx------ 1 boinc boinc     36292 Oct 18 21:32 runpilot2-wrapper.sh
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc      5112 Oct 18 21:32 queuedata.json
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc       100 Oct 21 00:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 02:41:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 00:29 run_atlas
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc       105 Oct 21 00:29 job.xml
[2025-10-21 02:41:22] -rw-r--r-- 2 boinc boinc 185912290 Oct 21 00:29 EVNT.46808900._000177.pool.root.1
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc      6684 Oct 21 00:29 init_data.xml
[2025-10-21 02:41:22] -rw-r--r-- 2 boinc boinc     15120 Oct 21 00:29 start_atlas.sh
[2025-10-21 02:41:22] drwxrwx--x 2 boinc boinc      4096 Oct 21 00:29 shared
[2025-10-21 02:41:22] -rw-r--r-- 2 boinc boinc    569667 Oct 21 00:29 input.tar.gz
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc         0 Oct 21 00:29 boinc_lockfile
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc      2503 Oct 21 00:29 pandaJob.out
[2025-10-21 02:41:22] -rw------- 1 boinc boinc    978846 Oct 21 00:29 agis_schedconf.cvmfs.json
[2025-10-21 02:41:22] -rw------- 1 boinc boinc   1560740 Oct 21 00:29 agis_ddmendpoints.agis.ALL.json
[2025-10-21 02:41:22] drwx------ 5 boinc boinc      4096 Oct 21 00:29 pilot3
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc       529 Oct 21 02:29 boinc_task_state.xml
[2025-10-21 02:41:22] -rw------- 1 boinc boinc 147332066 Oct 21 02:29 HITS.46808902._004344.pool.root.1
[2025-10-21 02:41:22] -rw------- 1 boinc boinc      1026 Oct 21 02:30 memory_monitor_summary.json
[2025-10-21 02:41:22] -rw------- 1 boinc boinc    299013 Oct 21 02:30 log.46808902._004344.job.log.tgz.1
[2025-10-21 02:41:22] -rw------- 1 boinc boinc      7783 Oct 21 02:30 heartbeat.json
[2025-10-21 02:41:22] -rw------- 1 boinc boinc        95 Oct 21 02:31 pilot_heartbeat.json
[2025-10-21 02:41:22] -rw------- 1 boinc boinc      4835 Oct 21 02:31 pilotlog.txt
[2025-10-21 02:41:22] -rw------- 1 boinc boinc   1034026 Oct 21 02:31 log.46808902._004344.job.log.1
[2025-10-21 02:41:22] -rw------- 1 boinc boinc       357 Oct 21 02:31 output.list
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc       620 Oct 21 02:31 runtime_log
[2025-10-21 02:41:22] -rw------- 1 boinc boinc   1351680 Oct 21 02:31 result.tar.gz
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc      9069 Oct 21 02:31 runtime_log.err
[2025-10-21 02:41:22] -rw------- 1 boinc boinc       662 Oct 21 02:31 p68NDmvpRU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmprcMDmjPlN3m.diag
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc        27 Oct 21 02:40 wrapper_checkpoint.txt
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc      8192 Oct 21 02:41 boinc_mmap_file
[2025-10-21 02:41:22] -rw-r--r-- 1 boinc boinc     20956 Oct 21 02:41 stderr.txt
[2025-10-21 02:41:22] HITS file was successfully produced:
[2025-10-21 02:41:22] -rw------- 1 boinc boinc 147332066 Oct 21 02:29 shared/HITS.pool.root.1
[2025-10-21 02:41:22]  *** Contents of shared directory: ***
[2025-10-21 02:41:22] total 327340
[2025-10-21 02:41:22] -rw-r--r-- 2 boinc boinc 185912290 Oct 21 00:29 ATLAS.root_0
[2025-10-21 02:41:22] -rw-r--r-- 2 boinc boinc     15120 Oct 21 00:29 start_atlas.sh
[2025-10-21 02:41:22] -rw-r--r-- 2 boinc boinc    569667 Oct 21 00:29 input.tar.gz
[2025-10-21 02:41:22] -rw------- 1 boinc boinc 147332066 Oct 21 02:29 HITS.pool.root.1
[2025-10-21 02:41:22] -rw------- 1 boinc boinc   1351680 Oct 21 02:31 result.tar.gz
02:41:23 (3762018): run_atlas exited; CPU time 27967.325216
02:41:23 (3762018): called boinc_finish(0)

</stderr_txt>
]]>

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