Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:46 (1497616): wrapper (7.7.26015): starting
12:29:46 (1497616): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 12:29:46] Arguments: --nthreads 4
[2025-10-19 12:29:46] Threads: 4
[2025-10-19 12:29:46] Checking for CVMFS
[2025-10-19 12:29:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 12:29:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 12:29:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 12:29:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 12:29:46] 2.9.2.0 4165322 4741 96060 151884 2 57 29883695 36864000 0 130560 0 3920987 99.992 168922 2214 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 12:29:46] CVMFS is ok
[2025-10-19 12:29:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 12:29:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 12:29:46] Further information can be found at the LHC@home message board.
[2025-10-19 12:29:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 12:29:46] Checking for apptainer binary...
[2025-10-19 12:29:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 12:29:46] Running /usr/bin/apptainer --version
[2025-10-19 12:29:46] apptainer version 1.4.1-1.1
[2025-10-19 12:29:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 12:29:46] thA309
[2025-10-19 12:29:46] apptainer works
[2025-10-19 12:29:46] Set ATHENA_PROC_NUMBER=4
[2025-10-19 12:29:46] Set ATHENA_CORE_NUMBER=4
[2025-10-19 12:29:46] Starting ATLAS job with PandaID=6850527228
[2025-10-19 12:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 13:26:15]  *** The last 200 lines of the pilot log: ***
[2025-10-19 13:26:15] 2025-10-19 11:25:44,112 | INFO     | process IDs to be killed: [1507989] (in reverse order)
[2025-10-19 13:26:15] 2025-10-19 11:25:44,149 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 13:26:15] 2025-10-19 11:25:44,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 13:26:15] 2025-10-19 11:25:44,151 | INFO     | did not find any defunct processes belonging to 1507989
[2025-10-19 13:26:15] 2025-10-19 11:25:44,153 | INFO     | did not find any defunct processes belonging to 1507989
[2025-10-19 13:26:15] 2025-10-19 11:25:44,153 | INFO     | ready for new job
[2025-10-19 13:26:15] 2025-10-19 11:25:44,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 13:26:15] 2025-10-19 11:25:44,153 | INFO     | ***************************************
[2025-10-19 13:26:15] 2025-10-19 11:25:44,153 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 13:26:15] 2025-10-19 11:25:44,154 | INFO     | ***************************************
[2025-10-19 13:26:15] 2025-10-19 11:25:44,154 | INFO     | 
[2025-10-19 13:26:15] 2025-10-19 11:25:44,154 | INFO     | architecture information:
[2025-10-19 13:26:15] 2025-10-19 11:25:44,154 | INFO     | executing command: cat /etc/os-release
[2025-10-19 13:26:15] 2025-10-19 11:25:44,170 | INFO     | cat /etc/os-release:
[2025-10-19 13:26:15] NAME="CentOS Linux"
[2025-10-19 13:26:15] VERSION="7 (Core)"
[2025-10-19 13:26:15] ID="centos"
[2025-10-19 13:26:15] ID_LIKE="rhel fedora"
[2025-10-19 13:26:15] VERSION_ID="7"
[2025-10-19 13:26:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 13:26:15] ANSI_COLOR="0;31"
[2025-10-19 13:26:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 13:26:15] HOME_URL="https://www.centos.org/"
[2025-10-19 13:26:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 13:26:15] 
[2025-10-19 13:26:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 13:26:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 13:26:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 13:26:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 13:26:15] 
[2025-10-19 13:26:15] 2025-10-19 11:25:44,170 | INFO     | ***************************************
[2025-10-19 13:26:15] 2025-10-19 11:25:44,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 13:26:15] 2025-10-19 11:25:44,692 | INFO     | sufficient remaining disk space (231493074944 B)
[2025-10-19 13:26:15] 2025-10-19 11:25:44,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 13:26:15] 2025-10-19 11:25:44,693 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 13:26:15] 2025-10-19 11:25:44,693 | INFO     | update_server=False
[2025-10-19 13:26:15] 2025-10-19 11:25:44,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 13:26:15] 2025-10-19 11:25:44,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 13:26:15] 2025-10-19 11:25:44,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 13:26:15] 2025-10-19 11:25:44,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 13:26:15] 2025-10-19 11:25:44,738 | INFO     | aborting loop
[2025-10-19 13:26:15] 2025-10-19 11:25:44,747 | INFO     | all data control threads have been joined
[2025-10-19 13:26:15] 2025-10-19 11:25:45,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 13:26:15] 2025-10-19 11:25:45,445 | INFO     | all payload control threads have been joined
[2025-10-19 13:26:15] 2025-10-19 11:25:45,698 | INFO     | [job] retrieve thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:45,699 | INFO     | [job] queue monitor thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:45,743 | INFO     | [job] job monitor thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:45,752 | INFO     | [data] control thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:45,781 | INFO     | all job control threads have been joined
[2025-10-19 13:26:15] 2025-10-19 11:25:45,809 | INFO     | [payload] failed_post thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:45,910 | INFO     | [data] copytool_in thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,333 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,451 | INFO     | [payload] control thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,693 | INFO     | [job] validate thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,786 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,787 | INFO     | [job] control thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,869 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:46,979 | INFO     | [payload] validate_post thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:47,210 | INFO     | [data] copytool_out thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:48,700 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:55,027 | INFO     | job.realtimelogging is not enabled
[2025-10-19 13:26:15] 2025-10-19 11:25:56,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 13:26:15] 2025-10-19 11:25:58,175 | INFO     | [monitor] cgroup control has ended
[2025-10-19 13:26:15] 2025-10-19 11:25:58,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635362658112)>', '<ExcThread(monitor, started 139634336061184)>']
[2025-10-19 13:26:15] 2025-10-19 11:26:03,440 | INFO     | all workflow threads have been joined
[2025-10-19 13:26:15] 2025-10-19 11:26:03,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 13:26:15] 2025-10-19 11:26:03,441 | INFO     | traces error code: 0
[2025-10-19 13:26:15] 2025-10-19 11:26:03,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 13:26:15] 2025-10-19 11:26:15,195 | INFO     | PID=1501410 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 13:26:15] 2025-10-19 11:26:15,195 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 13:26:15] 2025-10-19 11:26:15,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 13:26:15] 2025-10-19 11:26:15,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 13:26:15] 2025-10-19 11:26:15,195 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 13:26:15] 2025-10-19 11:26:15,195 | INFO     | [monitor] control thread has ended
[2025-10-19 13:26:15] 2025-10-19 11:26:15,275 [wrapper] ==== pilot stdout END ====
[2025-10-19 13:26:15] 2025-10-19 11:26:15,279 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 13:26:15] 2025-10-19 11:26:15,283 [wrapper] pilotpid: 1501410
[2025-10-19 13:26:15] 2025-10-19 11:26:15,287 [wrapper] Pilot exit status: 0
[2025-10-19 13:26:15] 2025-10-19 11:26:15,299 [wrapper] pandaids: 6850527228
[2025-10-19 13:26:15] 2025-10-19 11:26:15,322 [wrapper] cleanup supervisor_pilot 1517616 1501411
[2025-10-19 13:26:15] 2025-10-19 11:26:15,326 [wrapper] Test setup, not cleaning
[2025-10-19 13:26:15] 2025-10-19 11:26:15,330 [wrapper] apfmon messages muted
[2025-10-19 13:26:15] 2025-10-19 11:26:15,334 [wrapper] ==== wrapper stdout END ====
[2025-10-19 13:26:15] 2025-10-19 11:26:15,338 [wrapper] ==== wrapper stderr END ====
[2025-10-19 13:26:15]  *** Error codes and diagnostics ***
[2025-10-19 13:26:15]     "exeErrorCode": 0,
[2025-10-19 13:26:15]     "exeErrorDiag": "",
[2025-10-19 13:26:15]     "pilotErrorCode": 0,
[2025-10-19 13:26:15]     "pilotErrorDiag": "",
[2025-10-19 13:26:15]  *** Listing of results directory ***
[2025-10-19 13:26:15] total 334068
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc    557409 Oct 18 20:42 pilot3.tar.gz
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc      5112 Oct 18 20:47 queuedata.json
[2025-10-19 13:26:15] -rwx------ 1 boinc boinc     36292 Oct 18 20:47 runpilot2-wrapper.sh
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc       100 Oct 19 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 13:26:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 12:29 run_atlas
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc       105 Oct 19 12:29 job.xml
[2025-10-19 13:26:15] -rw-r--r-- 2 boinc boinc 189836957 Oct 19 12:29 EVNT.46808900._000146.pool.root.1
[2025-10-19 13:26:15] drwxrwx--x 2 boinc boinc      4096 Oct 19 12:29 shared
[2025-10-19 13:26:15] -rw-r--r-- 2 boinc boinc    569673 Oct 19 12:29 input.tar.gz
[2025-10-19 13:26:15] -rw-r--r-- 2 boinc boinc     15120 Oct 19 12:29 start_atlas.sh
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc         0 Oct 19 12:29 boinc_setup_complete
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc      6377 Oct 19 12:29 init_data.xml
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc         0 Oct 19 12:29 boinc_lockfile
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc      2503 Oct 19 12:29 pandaJob.out
[2025-10-19 13:26:15] -rw------- 1 boinc boinc    976750 Oct 19 12:29 agis_schedconf.cvmfs.json
[2025-10-19 13:26:15] -rw------- 1 boinc boinc   1560740 Oct 19 12:29 agis_ddmendpoints.agis.ALL.json
[2025-10-19 13:26:15] drwx------ 5 boinc boinc      4096 Oct 19 12:29 pilot3
[2025-10-19 13:26:15] -rw------- 1 boinc boinc 146845009 Oct 19 13:25 HITS.46808902._003622.pool.root.1
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc       529 Oct 19 13:25 boinc_task_state.xml
[2025-10-19 13:26:15] -rw------- 1 boinc boinc      1020 Oct 19 13:25 memory_monitor_summary.json
[2025-10-19 13:26:15] -rw------- 1 boinc boinc    246180 Oct 19 13:25 log.46808902._003622.job.log.tgz.1
[2025-10-19 13:26:15] -rw------- 1 boinc boinc      7758 Oct 19 13:25 heartbeat.json
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc      8192 Oct 19 13:26 boinc_mmap_file
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc        27 Oct 19 13:26 wrapper_checkpoint.txt
[2025-10-19 13:26:15] -rw------- 1 boinc boinc       747 Oct 19 13:26 pilotlog.txt
[2025-10-19 13:26:15] -rw------- 1 boinc boinc        95 Oct 19 13:26 pilot_heartbeat.json
[2025-10-19 13:26:15] -rw------- 1 boinc boinc    508097 Oct 19 13:26 log.46808902._003622.job.log.1
[2025-10-19 13:26:15] -rw------- 1 boinc boinc       357 Oct 19 13:26 output.list
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc       620 Oct 19 13:26 runtime_log
[2025-10-19 13:26:15] -rw------- 1 boinc boinc    778240 Oct 19 13:26 result.tar.gz
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc      8777 Oct 19 13:26 runtime_log.err
[2025-10-19 13:26:15] -rw------- 1 boinc boinc       657 Oct 19 13:26 hveKDmv8QU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmImcMDmnN81cn.diag
[2025-10-19 13:26:15] -rw-r--r-- 1 boinc boinc     10178 Oct 19 13:26 stderr.txt
[2025-10-19 13:26:15] HITS file was successfully produced:
[2025-10-19 13:26:15] -rw------- 1 boinc boinc 146845009 Oct 19 13:25 shared/HITS.pool.root.1
[2025-10-19 13:26:15]  *** Contents of shared directory: ***
[2025-10-19 13:26:15] total 330136
[2025-10-19 13:26:15] -rw-r--r-- 2 boinc boinc 189836957 Oct 19 12:29 ATLAS.root_0
[2025-10-19 13:26:15] -rw-r--r-- 2 boinc boinc    569673 Oct 19 12:29 input.tar.gz
[2025-10-19 13:26:15] -rw-r--r-- 2 boinc boinc     15120 Oct 19 12:29 start_atlas.sh
[2025-10-19 13:26:15] -rw------- 1 boinc boinc 146845009 Oct 19 13:25 HITS.pool.root.1
[2025-10-19 13:26:15] -rw------- 1 boinc boinc    778240 Oct 19 13:26 result.tar.gz
13:26:16 (1497616): run_atlas exited; CPU time 12429.673547
13:26:16 (1497616): called boinc_finish(0)

</stderr_txt>
]]>

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