Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
03:47:14 (22952): wrapper (7.7.26015): starting
03:47:14 (22952): wrapper: running run_atlas (--nthreads 8)
[2025-10-19 03:47:14] Arguments: --nthreads 8
[2025-10-19 03:47:14] Threads: 8
[2025-10-19 03:47:14] Checking for CVMFS
[2025-10-19 03:47:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 03:47:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 03:47:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 03:47:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 03:47:15] 2.11.0.0 8301 10296 62684 151870 0 188 3622740 4096001 1834 130560 0 2246478 99.695 978097 655 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-19 03:47:15] CVMFS is ok
[2025-10-19 03:47:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 03:47:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 03:47:15] Further information can be found at the LHC@home message board.
[2025-10-19 03:47:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 03:47:15] Checking for apptainer binary...
[2025-10-19 03:47:15] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-19 03:47:15] apptainer is not installed, using version from CVMFS
[2025-10-19 03:47:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 03:47:15] WARNING: Environment variable TMPDIR already has value [/tmp/job_10684916/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node228
[2025-10-19 03:47:15] apptainer works
[2025-10-19 03:47:15] Set ATHENA_PROC_NUMBER=8
[2025-10-19 03:47:15] Set ATHENA_CORE_NUMBER=8
[2025-10-19 03:47:15] Starting ATLAS job with PandaID=6848041388
[2025-10-19 03:47:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10684916/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 04:41:30]  *** The last 200 lines of the pilot log: ***
[2025-10-19 04:41:30]  replicas=None
[2025-10-19 04:41:30]  scope=mc23_13p6TeV
[2025-10-19 04:41:30]  status=None
[2025-10-19 04:41:30]  status_code=0
[2025-10-19 04:41:30]  storage_token=
[2025-10-19 04:41:30]  surl=/tmp/job_10684916/atlas/pilot/slots/0/PanDA_Pilot-6848041388/log.46771637._045965.job.log.tgz.1
[2025-10-19 04:41:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/68/log.46771637._045965.job.log.tgz.1
[2025-10-19 04:41:30]  workdir=None
[2025-10-19 04:41:30] ]
[2025-10-19 04:41:30] 2025-10-19 02:40:46,627 | INFO     | transferring file log.46771637._045965.job.log.tgz.1 from /tmp/job_10684916/atlas/pilot/slots/0/PanDA_Pilot-6848041388/log.46771637._045965.job.log.tgz.1 to /tmp/j
[2025-10-19 04:41:30] 2025-10-19 02:40:46,627 | INFO     | executing command: /usr/bin/env mv /tmp/job_10684916/atlas/pilot/slots/0/PanDA_Pilot-6848041388/log.46771637._045965.job.log.tgz.1 /tmp/job_10684916/atlas/pilot/sl
[2025-10-19 04:41:30] 2025-10-19 02:40:46,635 | INFO     | adding to output.list: log.46771637._045965.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/68/log.46771637._045965.job.log.tg
[2025-10-19 04:41:30] 2025-10-19 02:40:46,636 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 04:41:30] 2025-10-19 02:40:46,636 | INFO     | summary of transferred files:
[2025-10-19 04:41:30] 2025-10-19 02:40:46,636 | INFO     |  -- lfn=log.46771637._045965.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 04:41:30] 2025-10-19 02:40:46,636 | INFO     | stage-out finished correctly
[2025-10-19 04:41:30] 2025-10-19 02:40:47,075 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 04:41:30] 2025-10-19 02:40:47,685 | INFO     | time since job start (3207s) is within the limit (172800.0s)
[2025-10-19 04:41:30] 2025-10-19 02:40:47,933 | WARNING  | process 3408 can no longer be monitored (due to stat problems) - aborting
[2025-10-19 04:41:30] 2025-10-19 02:40:47,933 | INFO     | using path: /tmp/job_10684916/atlas/pilot/slots/0/PanDA_Pilot-6848041388/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 04:41:30] 2025-10-19 02:40:48,015 | INFO     | number of running child processes to parent process 3408: 1
[2025-10-19 04:41:30] 2025-10-19 02:40:48,015 | INFO     | maximum number of monitored processes: 6
[2025-10-19 04:41:30] 2025-10-19 02:40:49,691 | INFO     | time since job start (3209s) is within the limit (172800.0s)
[2025-10-19 04:41:30] 2025-10-19 02:40:49,911 | INFO     | job 6848041388 has state=finished
[2025-10-19 04:41:30] 2025-10-19 02:40:49,911 | INFO     | preparing for final server update for job 6848041388 in state='finished'
[2025-10-19 04:41:30] 2025-10-19 02:40:49,911 | INFO     | this job has now completed (state=finished)
[2025-10-19 04:41:30] 2025-10-19 02:40:49,911 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 04:41:30] 2025-10-19 02:40:49,911 | INFO     | log transfer has been attempted: DONE
[2025-10-19 04:41:30] 2025-10-19 02:40:49,911 | INFO     | job 6848041388 has finished - writing final server update
[2025-10-19 04:41:30] 2025-10-19 02:40:49,912 | INFO     | total number of processed events: 400 (read)
[2025-10-19 04:41:30] 2025-10-19 02:40:49,912 | INFO     | executing command: lscpu
[2025-10-19 04:41:30] 2025-10-19 02:40:49,942 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 04:41:30] 2025-10-19 02:40:50,517 | INFO     | monitor loop #240: job 0:6848041388 is in state 'finished'
[2025-10-19 04:41:30] 2025-10-19 02:40:50,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 04:41:30] 2025-10-19 02:40:50,812 | INFO     | PID=27548 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-19 04:41:30] 2025-10-19 02:40:51,489 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 04:41:30] 2025-10-19 02:40:51,494 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2364.78334375
[2025-10-19 04:41:30] 2025-10-19 02:40:51,499 | INFO     | using path: /tmp/job_10684916/atlas/pilot/slots/0/PanDA_Pilot-6848041388/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,499 | INFO     | extracted standard info from prmon json
[2025-10-19 04:41:30] 2025-10-19 02:40:51,499 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 04:41:30] 2025-10-19 02:40:51,499 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 04:41:30] 2025-10-19 02:40:51,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 04:41:30] 2025-10-19 02:40:51,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 04:41:30] 2025-10-19 02:40:51,500 | INFO     | fitting pss+swap vs Time
[2025-10-19 04:41:30] 2025-10-19 02:40:51,500 | INFO     | sum of square deviations: 30168007.5
[2025-10-19 04:41:30] 2025-10-19 02:40:51,500 | INFO     | sum of deviations: -2259688636.0
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | mean x: 1760840134.5
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | mean y: 2614036.4782608696
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | -- intersect: 131895661389.45181
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | intersect: 131895661389.45181
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | chi2: 0.02395710591701354
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | -- intersect: 131895661389.45181
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | current memory leak: -74.90 B/s (using 46 data points, chi2=0.02)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | could have reported an average CPU frequency of 2567 MHz (5 samples)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | ..............................
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . Timing measurements:
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . get job = 0 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . initial setup = 1 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . payload setup = 2 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . stage-in = 0 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . payload execution = 3188 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . stage-out = 0 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | . log creation = 0 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,501 | INFO     | ..............................
[2025-10-19 04:41:30] 2025-10-19 02:40:51,812 | INFO     | time since job start (3211s) is within the limit (172800.0s)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,847 | INFO     | 
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | job summary report
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | --------------------------------------------------
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | PanDA job id: 6848041388
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | task id: 46771637
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | errors: (none)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | pilot state: finished 
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | transexitcode: 0
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | exeerrorcode: 0
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | exeerrordiag: 
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | exitcode: 0
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | exitmsg: OK
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | cpuconsumptiontime: 23707 s
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | nevents: 400
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | neventsw: 0
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | pid: 3408
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | pgrp: 3408
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | corecount: 8
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | event service: False
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | sizes: {0: 2349055, 2: 2349317, 11: 2349345, 3194: 2383981, 3195: 2383981, 3199: 2384207}
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | --------------------------------------------------
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | 
[2025-10-19 04:41:30] 2025-10-19 02:40:51,848 | INFO     | executing command: ls -lF /tmp/job_10684916/atlas/pilot/slots/0
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 04:41:30] 2025-10-19 02:40:51,859 | INFO     | job 6848041388 has completed (purged errors)
[2025-10-19 04:41:30] 2025-10-19 02:40:51,859 | INFO     | overall cleanup function is called
[2025-10-19 04:41:30] 2025-10-19 02:40:52,864 | INFO     | --- collectZombieJob: --- 10, [3408]
[2025-10-19 04:41:30] 2025-10-19 02:40:52,865 | INFO     | zombie collector waiting for pid 3408
[2025-10-19 04:41:30] 2025-10-19 02:40:52,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 04:41:30] 2025-10-19 02:40:52,865 | INFO     | collected zombie processes
[2025-10-19 04:41:30] 2025-10-19 02:40:52,865 | INFO     | will attempt to kill all subprocesses of pid=3408
[2025-10-19 04:41:30] 2025-10-19 02:40:52,950 | INFO     | process IDs to be killed: [3408] (in reverse order)
[2025-10-19 04:41:30] 2025-10-19 02:40:52,979 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 04:41:30] 2025-10-19 02:40:52,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 04:41:30] 2025-10-19 02:40:52,982 | INFO     | did not find any defunct processes belonging to 3408
[2025-10-19 04:41:30] 2025-10-19 02:40:52,985 | INFO     | did not find any defunct processes belonging to 3408
[2025-10-19 04:41:30] 2025-10-19 02:40:52,985 | INFO     | ready for new job
[2025-10-19 04:41:30] 2025-10-19 02:40:52,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 04:41:30] 2025-10-19 02:40:52,986 | INFO     | ***************************************
[2025-10-19 04:41:30] 2025-10-19 02:40:52,986 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 04:41:30] 2025-10-19 02:40:52,986 | INFO     | ***************************************
[2025-10-19 04:41:30] 2025-10-19 02:40:52,986 | INFO     | 
[2025-10-19 04:41:30] 2025-10-19 02:40:53,000 | INFO     | architecture information:
[2025-10-19 04:41:30] 2025-10-19 02:40:53,000 | INFO     | executing command: cat /etc/os-release
[2025-10-19 04:41:30] 2025-10-19 02:40:53,007 | INFO     | cat /etc/os-release:
[2025-10-19 04:41:30] NAME="CentOS Linux"
[2025-10-19 04:41:30] VERSION="7 (Core)"
[2025-10-19 04:41:30] ID="centos"
[2025-10-19 04:41:30] ID_LIKE="rhel fedora"
[2025-10-19 04:41:30] VERSION_ID="7"
[2025-10-19 04:41:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 04:41:30] ANSI_COLOR="0;31"
[2025-10-19 04:41:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 04:41:30] HOME_URL="https://www.centos.org/"
[2025-10-19 04:41:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 04:41:30] 
[2025-10-19 04:41:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 04:41:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 04:41:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 04:41:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 04:41:30] 
[2025-10-19 04:41:30] 2025-10-19 02:40:53,007 | INFO     | ***************************************
[2025-10-19 04:41:30] 2025-10-19 02:40:53,509 | INFO     | executing command: df -mP /tmp/job_10684916/atlas/pilot/slots/0
[2025-10-19 04:41:30] 2025-10-19 02:40:53,515 | INFO     | sufficient remaining disk space (227570352128 B)
[2025-10-19 04:41:30] 2025-10-19 02:40:53,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 04:41:30] 2025-10-19 02:40:53,515 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 04:41:30] 2025-10-19 02:40:53,515 | INFO     | update_server=False
[2025-10-19 04:41:30] 2025-10-19 02:40:53,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 04:41:30] 2025-10-19 02:40:53,516 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 04:41:30] 2025-10-19 02:40:53,516 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-19 04:41:30] 2025-10-19 02:40:53,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 04:41:30] 2025-10-19 02:40:53,516 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 04:41:30] 2025-10-19 02:40:53,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 04:41:30] 2025-10-19 02:40:53,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 04:41:30] 2025-10-19 02:40:53,853 | INFO     | all data control threads have been joined
[2025-10-19 04:41:30] 2025-10-19 02:40:54,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 04:41:30] 2025-10-19 02:40:54,030 | INFO     | aborting loop
[2025-10-19 04:41:30] 2025-10-19 02:40:54,039 | INFO     | all payload control threads have been joined
[2025-10-19 04:41:30] 2025-10-19 02:40:54,521 | INFO     | [job] retrieve thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:54,521 | INFO     | [job] queue monitor thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:54,582 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:54,591 | INFO     | [payload] failed_post thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:54,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 04:41:30] 2025-10-19 02:40:54,702 | INFO     | [data] copytool_in thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:54,708 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:54,802 | INFO     | all job control threads have been joined
[2025-10-19 04:41:30] 2025-10-19 02:40:54,858 | INFO     | [data] control thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:55,035 | INFO     | [job] job monitor thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:55,044 | INFO     | [payload] control thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:55,260 | INFO     | [payload] validate_post thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:55,808 | INFO     | [job] control thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:55,938 | INFO     | [job] validate thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:55,983 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:56,704 | INFO     | [data] copytool_out thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:40:57,521 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:41:04,379 | INFO     | job.realtimelogging is not enabled
[2025-10-19 04:41:30] 2025-10-19 02:41:05,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 04:41:30] 2025-10-19 02:41:24,814 | INFO     | [monitor] cgroup control has ended
[2025-10-19 04:41:30] 2025-10-19 02:41:24,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-19 04:41:30] 2025-10-19 02:41:25,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 04:41:30] 2025-10-19 02:41:25,675 | INFO     | [monitor] control thread has ended
[2025-10-19 04:41:30] 2025-10-19 02:41:29,882 | INFO     | all workflow threads have been joined
[2025-10-19 04:41:30] 2025-10-19 02:41:29,883 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 04:41:30] 2025-10-19 02:41:29,883 | INFO     | traces error code: 0
[2025-10-19 04:41:30] 2025-10-19 02:41:29,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 04:41:30] 2025-10-19 02:41:29,935 [wrapper] ==== pilot stdout END ====
[2025-10-19 04:41:30] 2025-10-19 02:41:29,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 04:41:30] 2025-10-19 02:41:29,937 [wrapper] pilotpid: 27548
[2025-10-19 04:41:30] 2025-10-19 02:41:29,939 [wrapper] Pilot exit status: 0
[2025-10-19 04:41:30] 2025-10-19 02:41:29,942 [wrapper] pandaids: 6848041388
[2025-10-19 04:41:30] 2025-10-19 02:41:29,965 [wrapper] cleanup supervisor_pilot  2162 27549
[2025-10-19 04:41:30] 2025-10-19 02:41:29,966 [wrapper] Test setup, not cleaning
[2025-10-19 04:41:30] 2025-10-19 02:41:29,967 [wrapper] apfmon messages muted
[2025-10-19 04:41:30] 2025-10-19 02:41:29,969 [wrapper] ==== wrapper stdout END ====
[2025-10-19 04:41:30] 2025-10-19 02:41:29,970 [wrapper] ==== wrapper stderr END ====
[2025-10-19 04:41:30]  *** Error codes and diagnostics ***
[2025-10-19 04:41:30]     "exeErrorCode": 0,
[2025-10-19 04:41:30]     "exeErrorDiag": "",
[2025-10-19 04:41:30]     "pilotErrorCode": 0,
[2025-10-19 04:41:30]     "pilotErrorDiag": "",
[2025-10-19 04:41:30]  *** Listing of results directory ***
[2025-10-19 04:41:30] total 439624
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user    557409 Oct 18 19:39 pilot3.tar.gz
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      5112 Oct 18 20:11 queuedata.json
[2025-10-19 04:41:30] -rwx------ 1 mf493845 unix-user     36292 Oct 18 20:12 runpilot2-wrapper.sh
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user       100 Oct 19 02:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 04:41:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 19 02:48 run_atlas
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user       105 Oct 19 02:48 job.xml
[2025-10-19 04:41:30] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 19 03:47 start_atlas.sh
[2025-10-19 04:41:30] drwxrwx--x 2 mf493845 unix-user       100 Oct 19 03:47 shared
[2025-10-19 04:41:30] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 19 03:47 input.tar.gz
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      6394 Oct 19 03:47 init_data.xml
[2025-10-19 04:41:30] -rw-r--r-- 2 mf493845 unix-user 229054006 Oct 19 03:47 EVNT.46771634._001937.pool.root.1
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user         0 Oct 19 03:47 boinc_setup_complete
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      8192 Oct 19 03:47 boinc_mmap_file
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user         0 Oct 19 03:47 boinc_lockfile
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      2558 Oct 19 03:47 pandaJob.out
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user    976750 Oct 19 03:47 agis_schedconf.cvmfs.json
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user   1560740 Oct 19 03:47 agis_ddmendpoints.agis.ALL.json
[2025-10-19 04:41:30] drwx------ 5 mf493845 unix-user       440 Oct 19 03:47 pilot3
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user        95 Oct 19 04:40 pilot_heartbeat.json
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user 215599169 Oct 19 04:40 HITS.46771637._045965.pool.root.1
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      1014 Oct 19 04:40 memory_monitor_summary.json
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user    319760 Oct 19 04:40 log.46771637._045965.job.log.tgz.1
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      7774 Oct 19 04:40 heartbeat.json
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      4638 Oct 19 04:41 pilotlog.txt
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user    500135 Oct 19 04:41 log.46771637._045965.job.log.1
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user       357 Oct 19 04:41 output.list
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user       620 Oct 19 04:41 runtime_log
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user    839680 Oct 19 04:41 result.tar.gz
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user      9076 Oct 19 04:41 runtime_log.err
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user       642 Oct 19 04:41 5pSKDmsaQU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDicMDmw99Con.diag
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user     22329 Oct 19 04:41 stderr.txt
[2025-10-19 04:41:30] HITS file was successfully produced:
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user 215599169 Oct 19 04:40 shared/HITS.pool.root.1
[2025-10-19 04:41:30]  *** Contents of shared directory: ***
[2025-10-19 04:41:30] total 435632
[2025-10-19 04:41:30] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 19 03:47 start_atlas.sh
[2025-10-19 04:41:30] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 19 03:47 input.tar.gz
[2025-10-19 04:41:30] -rw-r--r-- 2 mf493845 unix-user 229054006 Oct 19 03:47 ATLAS.root_0
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user 215599169 Oct 19 04:40 HITS.pool.root.1
[2025-10-19 04:41:30] -rw------- 1 mf493845 unix-user    839680 Oct 19 04:41 result.tar.gz
04:41:31 (22952): run_atlas exited; CPU time 23748.587276
04:41:31 (22952): called boinc_finish(0)

</stderr_txt>
]]>

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