Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:10:07 (278335): wrapper (7.7.26015): starting
14:10:07 (278335): wrapper: running run_atlas (--nthreads 12)
[2025-10-19 14:10:07] Arguments: --nthreads 12
[2025-10-19 14:10:07] Threads: 12
[2025-10-19 14:10:07] Checking for CVMFS
[2025-10-19 14:10:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 14:10:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 14:10:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 14:10:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 14:10:07] 2.13.2.0 8705 43335 134428 151886 2 188 43132323 46080001 878 130560 0 78390287 99.997 1453181 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-19 14:10:07] CVMFS is ok
[2025-10-19 14:10:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 14:10:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 14:10:07] Further information can be found at the LHC@home message board.
[2025-10-19 14:10:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 14:10:07] Checking for apptainer binary...
[2025-10-19 14:10:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 14:10:07] Running /usr/bin/apptainer --version
[2025-10-19 14:10:07] apptainer version 1.4.2-1.el9
[2025-10-19 14:10:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 14:10:08] gpu01.farm.particle.cz
[2025-10-19 14:10:08] apptainer works
[2025-10-19 14:10:08] Set ATHENA_PROC_NUMBER=12
[2025-10-19 14:10:08] Set ATHENA_CORE_NUMBER=12
[2025-10-19 14:10:08] Starting ATLAS job with PandaID=6848041404
[2025-10-19 14:10:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 14:52:25]  *** The last 200 lines of the pilot log: ***
[2025-10-19 14:52:25]  scope=mc23_13p6TeV
[2025-10-19 14:52:25]  status=None
[2025-10-19 14:52:25]  status_code=0
[2025-10-19 14:52:25]  storage_token=
[2025-10-19 14:52:25]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6848041404/log.46771637._045981.job.log.tgz.1
[2025-10-19 14:52:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/56/log.46771637._045981.job.log.tgz.1
[2025-10-19 14:52:25]  workdir=None
[2025-10-19 14:52:25] ]
[2025-10-19 14:52:25] 2025-10-19 12:51:20,600 | INFO     | transferring file log.46771637._045981.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6848041404/log.46771637._045981.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-19 14:52:25] 2025-10-19 12:51:20,600 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6848041404/log.46771637._045981.job.log.tgz.1 /var/lib/boinc/slots/0/log.46771637._045981.job
[2025-10-19 14:52:25] 2025-10-19 12:51:20,615 | INFO     | adding to output.list: log.46771637._045981.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/56/log.46771637._045981.job.log.tg
[2025-10-19 14:52:25] 2025-10-19 12:51:20,616 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 14:52:25] 2025-10-19 12:51:20,616 | INFO     | summary of transferred files:
[2025-10-19 14:52:25] 2025-10-19 12:51:20,616 | INFO     |  -- lfn=log.46771637._045981.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 14:52:25] 2025-10-19 12:51:20,616 | INFO     | stage-out finished correctly
[2025-10-19 14:52:25] 2025-10-19 12:51:21,340 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 14:52:25] 2025-10-19 12:51:21,635 | INFO     | PID=282192 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-19 14:52:25] 2025-10-19 12:51:21,635 | INFO     | .. there are 2 such processes running
[2025-10-19 14:52:25] 2025-10-19 12:51:21,879 | INFO     | job 6848041404 has state=finished
[2025-10-19 14:52:25] 2025-10-19 12:51:21,879 | INFO     | preparing for final server update for job 6848041404 in state='finished'
[2025-10-19 14:52:25] 2025-10-19 12:51:21,880 | INFO     | this job has now completed (state=finished)
[2025-10-19 14:52:25] 2025-10-19 12:51:21,880 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 14:52:25] 2025-10-19 12:51:21,880 | INFO     | log transfer has been attempted: DONE
[2025-10-19 14:52:25] 2025-10-19 12:51:21,880 | INFO     | job 6848041404 has finished - writing final server update
[2025-10-19 14:52:25] 2025-10-19 12:51:21,880 | INFO     | total number of processed events: 400 (read)
[2025-10-19 14:52:25] 2025-10-19 12:51:21,881 | INFO     | executing command: lscpu
[2025-10-19 14:52:25] 2025-10-19 12:51:21,908 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 14:52:25] 2025-10-19 12:51:21,917 | INFO     | monitor loop #190: job 0:6848041404 is in state 'finished'
[2025-10-19 14:52:25] 2025-10-19 12:51:21,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 14:52:25] 2025-10-19 12:51:22,636 | INFO     | time since job start (2467s) is within the limit (172800.0s)
[2025-10-19 14:52:25] 2025-10-19 12:51:24,419 | INFO     | monitor loop #191: job 0:6848041404 is in state 'finished'
[2025-10-19 14:52:25] 2025-10-19 12:51:24,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 14:52:25] 2025-10-19 12:51:24,568 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 14:52:25] 2025-10-19 12:51:24,573 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3248.4460937500003
[2025-10-19 14:52:25] 2025-10-19 12:51:24,578 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6848041404/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 14:52:25] 2025-10-19 12:51:24,578 | INFO     | extracted standard info from prmon json
[2025-10-19 14:52:25] 2025-10-19 12:51:24,578 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 14:52:25] 2025-10-19 12:51:24,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 14:52:25] 2025-10-19 12:51:24,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 14:52:25] 2025-10-19 12:51:24,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 14:52:25] 2025-10-19 12:51:24,580 | INFO     | fitting pss+swap vs Time
[2025-10-19 14:52:25] 2025-10-19 12:51:24,580 | INFO     | sum of square deviations: 12176972.5
[2025-10-19 14:52:25] 2025-10-19 12:51:24,580 | INFO     | sum of deviations: -24830111.0
[2025-10-19 14:52:25] 2025-10-19 12:51:24,580 | INFO     | mean x: 1760877147.5
[2025-10-19 14:52:25] 2025-10-19 12:51:24,580 | INFO     | mean y: 2829759.0
[2025-10-19 14:52:25] 2025-10-19 12:51:24,580 | INFO     | -- intersect: 3593441056.659445
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | intersect: 3593441056.659445
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | chi2: 0.0024470097282482447
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | -- intersect: 3593441056.659445
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | current memory leak: -2.04 B/s (using 34 data points, chi2=0.00)
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | could have reported an average CPU frequency of 3175 MHz (5 samples)
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | ..............................
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | . Timing measurements:
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | . get job = 0 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | . initial setup = 2 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | . payload setup = 3 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,581 | INFO     | . stage-in = 0 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,582 | INFO     | . payload execution = 2443 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,582 | INFO     | . stage-out = 0 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,582 | INFO     | . log creation = 0 s
[2025-10-19 14:52:25] 2025-10-19 12:51:24,582 | INFO     | ..............................
[2025-10-19 14:52:25] 2025-10-19 12:51:24,642 | INFO     | time since job start (2469s) is within the limit (172800.0s)
[2025-10-19 14:52:25] 2025-10-19 12:51:25,007 | INFO     | 
[2025-10-19 14:52:25] 2025-10-19 12:51:25,007 | INFO     | job summary report
[2025-10-19 14:52:25] 2025-10-19 12:51:25,007 | INFO     | --------------------------------------------------
[2025-10-19 14:52:25] 2025-10-19 12:51:25,007 | INFO     | PanDA job id: 6848041404
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | task id: 46771637
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | errors: (none)
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | pilot state: finished 
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | transexitcode: 0
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | exeerrorcode: 0
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | exeerrordiag: 
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | exitcode: 0
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | exitmsg: OK
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | cpuconsumptiontime: 26663 s
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | nevents: 400
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | neventsw: 0
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | pid: 288861
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | pgrp: 288861
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | corecount: 12
[2025-10-19 14:52:25] 2025-10-19 12:51:25,008 | INFO     | event service: False
[2025-10-19 14:52:25] 2025-10-19 12:51:25,009 | INFO     | sizes: {0: 2348929, 3: 2349191, 11: 2349219, 2451: 2374424, 2452: 2383478, 2456: 2383648}
[2025-10-19 14:52:25] 2025-10-19 12:51:25,009 | INFO     | --------------------------------------------------
[2025-10-19 14:52:25] 2025-10-19 12:51:25,009 | INFO     | 
[2025-10-19 14:52:25] 2025-10-19 12:51:25,009 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-19 14:52:25] 2025-10-19 12:51:25,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,025 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | job 6848041404 has completed (purged errors)
[2025-10-19 14:52:25] 2025-10-19 12:51:25,026 | INFO     | overall cleanup function is called
[2025-10-19 14:52:25] 2025-10-19 12:51:26,034 | INFO     | --- collectZombieJob: --- 10, [288861]
[2025-10-19 14:52:25] 2025-10-19 12:51:26,035 | INFO     | zombie collector waiting for pid 288861
[2025-10-19 14:52:25] 2025-10-19 12:51:26,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 14:52:25] 2025-10-19 12:51:26,035 | INFO     | collected zombie processes
[2025-10-19 14:52:25] 2025-10-19 12:51:26,035 | INFO     | will attempt to kill all subprocesses of pid=288861
[2025-10-19 14:52:25] 2025-10-19 12:51:26,123 | INFO     | process IDs to be killed: [288861] (in reverse order)
[2025-10-19 14:52:25] 2025-10-19 12:51:26,162 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 14:52:25] 2025-10-19 12:51:26,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 14:52:25] 2025-10-19 12:51:26,165 | INFO     | did not find any defunct processes belonging to 288861
[2025-10-19 14:52:25] 2025-10-19 12:51:26,168 | INFO     | did not find any defunct processes belonging to 288861
[2025-10-19 14:52:25] 2025-10-19 12:51:26,168 | INFO     | ready for new job
[2025-10-19 14:52:25] 2025-10-19 12:51:26,168 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 14:52:25] 2025-10-19 12:51:26,169 | INFO     | ***************************************
[2025-10-19 14:52:25] 2025-10-19 12:51:26,169 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 14:52:25] 2025-10-19 12:51:26,169 | INFO     | ***************************************
[2025-10-19 14:52:25] 2025-10-19 12:51:26,169 | INFO     | 
[2025-10-19 14:52:25] 2025-10-19 12:51:26,170 | INFO     | architecture information:
[2025-10-19 14:52:25] 2025-10-19 12:51:26,171 | INFO     | executing command: cat /etc/os-release
[2025-10-19 14:52:25] 2025-10-19 12:51:26,183 | INFO     | cat /etc/os-release:
[2025-10-19 14:52:25] NAME="CentOS Linux"
[2025-10-19 14:52:25] VERSION="7 (Core)"
[2025-10-19 14:52:25] ID="centos"
[2025-10-19 14:52:25] ID_LIKE="rhel fedora"
[2025-10-19 14:52:25] VERSION_ID="7"
[2025-10-19 14:52:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 14:52:25] ANSI_COLOR="0;31"
[2025-10-19 14:52:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 14:52:25] HOME_URL="https://www.centos.org/"
[2025-10-19 14:52:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 14:52:25] 
[2025-10-19 14:52:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 14:52:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 14:52:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 14:52:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 14:52:25] 
[2025-10-19 14:52:25] 2025-10-19 12:51:26,183 | INFO     | ***************************************
[2025-10-19 14:52:25] 2025-10-19 12:51:26,686 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-19 14:52:25] 2025-10-19 12:51:26,699 | INFO     | sufficient remaining disk space (59019100160 B)
[2025-10-19 14:52:25] 2025-10-19 12:51:26,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 14:52:25] 2025-10-19 12:51:26,700 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 14:52:25] 2025-10-19 12:51:26,700 | INFO     | update_server=False
[2025-10-19 14:52:25] 2025-10-19 12:51:26,700 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 14:52:25] 2025-10-19 12:51:26,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 14:52:25] 2025-10-19 12:51:26,758 | INFO     | all payload control threads have been joined
[2025-10-19 14:52:25] 2025-10-19 12:51:26,923 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-19 14:52:25] 2025-10-19 12:51:26,923 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-19 14:52:25] 2025-10-19 12:51:26,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 14:52:25] 2025-10-19 12:51:26,923 | INFO     | will abort loop
[2025-10-19 14:52:25] 2025-10-19 12:51:27,375 | INFO     | all data control threads have been joined
[2025-10-19 14:52:25] 2025-10-19 12:51:27,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 14:52:25] 2025-10-19 12:51:27,675 | INFO     | all job control threads have been joined
[2025-10-19 14:52:25] 2025-10-19 12:51:27,705 | INFO     | [job] retrieve thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:27,763 | INFO     | [payload] control thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:27,828 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:27,928 | INFO     | [job] job monitor thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:28,357 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:28,380 | INFO     | [data] control thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:28,621 | INFO     | [payload] failed_post thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:28,680 | INFO     | [job] control thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:28,705 | INFO     | [data] copytool_out thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:28,837 | INFO     | [data] copytool_in thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:29,009 | INFO     | [job] validate thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:29,176 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:29,193 | INFO     | [payload] validate_post thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:29,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 14:52:25] 2025-10-19 12:51:30,651 | INFO     | [job] queue monitor thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:31,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:37,260 | INFO     | job.realtimelogging is not enabled
[2025-10-19 14:52:25] 2025-10-19 12:51:38,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 14:52:25] 2025-10-19 12:51:57,831 | INFO     | PID=282192 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-19 14:52:25] 2025-10-19 12:51:57,831 | INFO     | .. there are 2 such processes running
[2025-10-19 14:52:25] 2025-10-19 12:51:57,831 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 14:52:25] 2025-10-19 12:51:57,831 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 14:52:25] 2025-10-19 12:51:57,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 14:52:25] 2025-10-19 12:52:19,361 | INFO     | [monitor] cgroup control has ended
[2025-10-19 14:52:25] 2025-10-19 12:52:20,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888573998912)>', '<ExcThread(monitor, started 139887923672832)>']
[2025-10-19 14:52:25] 2025-10-19 12:52:20,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 14:52:25] 2025-10-19 12:52:20,948 | INFO     | [monitor] control thread has ended
[2025-10-19 14:52:25] 2025-10-19 12:52:25,267 | INFO     | all workflow threads have been joined
[2025-10-19 14:52:25] 2025-10-19 12:52:25,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 14:52:25] 2025-10-19 12:52:25,268 | INFO     | traces error code: 0
[2025-10-19 14:52:25] 2025-10-19 12:52:25,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 14:52:25] 2025-10-19 12:52:25,333 [wrapper] ==== pilot stdout END ====
[2025-10-19 14:52:25] 2025-10-19 12:52:25,335 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 14:52:25] 2025-10-19 12:52:25,337 [wrapper] pilotpid: 282192
[2025-10-19 14:52:25] 2025-10-19 12:52:25,339 [wrapper] Pilot exit status: 0
[2025-10-19 14:52:25] 2025-10-19 12:52:25,346 [wrapper] pandaids: 6848041404
[2025-10-19 14:52:25] 2025-10-19 12:52:25,372 [wrapper] cleanup supervisor_pilot  310414 282193
[2025-10-19 14:52:25] 2025-10-19 12:52:25,375 [wrapper] Test setup, not cleaning
[2025-10-19 14:52:25] 2025-10-19 12:52:25,376 [wrapper] apfmon messages muted
[2025-10-19 14:52:25] 2025-10-19 12:52:25,378 [wrapper] ==== wrapper stdout END ====
[2025-10-19 14:52:25] 2025-10-19 12:52:25,380 [wrapper] ==== wrapper stderr END ====
[2025-10-19 14:52:25]  *** Error codes and diagnostics ***
[2025-10-19 14:52:25]     "exeErrorCode": 0,
[2025-10-19 14:52:25]     "exeErrorDiag": "",
[2025-10-19 14:52:25]     "pilotErrorCode": 0,
[2025-10-19 14:52:25]     "pilotErrorDiag": "",
[2025-10-19 14:52:25]  *** Listing of results directory ***
[2025-10-19 14:52:25] total 426532
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc    557409 Oct 18 19:39 pilot3.tar.gz
[2025-10-19 14:52:25] -rwx------ 1 boinc boinc     36292 Oct 18 20:15 runpilot2-wrapper.sh
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc      5112 Oct 18 20:15 queuedata.json
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc       100 Oct 19 14:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 14:52:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 14:10 run_atlas
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc       105 Oct 19 14:10 job.xml
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc      9445 Oct 19 14:10 init_data.xml
[2025-10-19 14:52:25] -rw-r--r-- 2 boinc boinc 227977417 Oct 19 14:10 EVNT.46771634._001938.pool.root.1
[2025-10-19 14:52:25] -rw-r--r-- 2 boinc boinc     15120 Oct 19 14:10 start_atlas.sh
[2025-10-19 14:52:25] drwxrwx--x 2 boinc boinc      4096 Oct 19 14:10 shared
[2025-10-19 14:52:25] -rw-r--r-- 2 boinc boinc    569670 Oct 19 14:10 input.tar.gz
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc         0 Oct 19 14:10 boinc_lockfile
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc      2558 Oct 19 14:10 pandaJob.out
[2025-10-19 14:52:25] -rw------- 1 boinc boinc    976750 Oct 19 14:10 agis_schedconf.cvmfs.json
[2025-10-19 14:52:25] -rw------- 1 boinc boinc   1560740 Oct 19 14:10 agis_ddmendpoints.agis.ALL.json
[2025-10-19 14:52:25] drwx------ 5 boinc boinc      4096 Oct 19 14:10 pilot3
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc       529 Oct 19 14:50 boinc_task_state.xml
[2025-10-19 14:52:25] -rw------- 1 boinc boinc 203364513 Oct 19 14:50 HITS.46771637._045981.pool.root.1
[2025-10-19 14:52:25] -rw------- 1 boinc boinc      1011 Oct 19 14:51 memory_monitor_summary.json
[2025-10-19 14:52:25] -rw------- 1 boinc boinc    360539 Oct 19 14:51 log.46771637._045981.job.log.tgz.1
[2025-10-19 14:52:25] -rw------- 1 boinc boinc      7761 Oct 19 14:51 heartbeat.json
[2025-10-19 14:52:25] -rw------- 1 boinc boinc        95 Oct 19 14:51 pilot_heartbeat.json
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc      8192 Oct 19 14:52 boinc_mmap_file
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc        27 Oct 19 14:52 wrapper_checkpoint.txt
[2025-10-19 14:52:25] -rw------- 1 boinc boinc      5080 Oct 19 14:52 pilotlog.txt
[2025-10-19 14:52:25] -rw------- 1 boinc boinc    393470 Oct 19 14:52 log.46771637._045981.job.log.1
[2025-10-19 14:52:25] -rw------- 1 boinc boinc       357 Oct 19 14:52 output.list
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc       620 Oct 19 14:52 runtime_log
[2025-10-19 14:52:25] -rw------- 1 boinc boinc    778240 Oct 19 14:52 result.tar.gz
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc      8740 Oct 19 14:52 runtime_log.err
[2025-10-19 14:52:25] -rw------- 1 boinc boinc       658 Oct 19 14:52 IF2NDmxdQU8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6icMDm30mwin.diag
[2025-10-19 14:52:25] -rw-r--r-- 1 boinc boinc     21927 Oct 19 14:52 stderr.txt
[2025-10-19 14:52:25] HITS file was successfully produced:
[2025-10-19 14:52:25] -rw------- 1 boinc boinc 203364513 Oct 19 14:50 shared/HITS.pool.root.1
[2025-10-19 14:52:25]  *** Contents of shared directory: ***
[2025-10-19 14:52:25] total 422580
[2025-10-19 14:52:25] -rw-r--r-- 2 boinc boinc 227977417 Oct 19 14:10 ATLAS.root_0
[2025-10-19 14:52:25] -rw-r--r-- 2 boinc boinc     15120 Oct 19 14:10 start_atlas.sh
[2025-10-19 14:52:25] -rw-r--r-- 2 boinc boinc    569670 Oct 19 14:10 input.tar.gz
[2025-10-19 14:52:25] -rw------- 1 boinc boinc 203364513 Oct 19 14:50 HITS.pool.root.1
[2025-10-19 14:52:25] -rw------- 1 boinc boinc    778240 Oct 19 14:52 result.tar.gz
14:52:27 (278335): run_atlas exited; CPU time 26677.814966
14:52:27 (278335): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN