Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:59:24 (1320109): wrapper (7.7.26015): starting
07:59:24 (1320109): wrapper: running run_atlas (--nthreads 8)
[2025-10-19 07:59:24] Arguments: --nthreads 8
[2025-10-19 07:59:24] Threads: 8
[2025-10-19 07:59:24] Checking for CVMFS
[2025-10-19 07:59:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 07:59:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 07:59:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 07:59:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 07:59:24] 2.10.1.0 3847958 4687 72264 151876 1 57 3534152 4097024 0 130560 0 4549741 99.992 170007 5867 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-19 07:59:24] CVMFS is ok
[2025-10-19 07:59:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 07:59:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 07:59:24] Further information can be found at the LHC@home message board.
[2025-10-19 07:59:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 07:59:24] Checking for apptainer binary...
[2025-10-19 07:59:24] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-19 07:59:24] apptainer is not installed, using version from CVMFS
[2025-10-19 07:59:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 07:59:25] pckeatlas04
[2025-10-19 07:59:25] apptainer works
[2025-10-19 07:59:25] Set ATHENA_PROC_NUMBER=8
[2025-10-19 07:59:25] Set ATHENA_CORE_NUMBER=8
[2025-10-19 07:59:25] Starting ATLAS job with PandaID=6850464144
[2025-10-19 07:59:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 08:59:49]  *** The last 200 lines of the pilot log: ***
[2025-10-19 08:59:49]  status=None
[2025-10-19 08:59:49]  status_code=0
[2025-10-19 08:59:49]  storage_token=
[2025-10-19 08:59:49]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6850464144/log.46808902._003402.job.log.tgz.1
[2025-10-19 08:59:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/89/log.46808902._003402.job.log.tgz.1
[2025-10-19 08:59:49]  workdir=None
[2025-10-19 08:59:49] ]
[2025-10-19 08:59:49] 2025-10-19 06:59:09,409 | INFO     | transferring file log.46808902._003402.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6850464144/log.46808902._003402.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-19 08:59:49] 2025-10-19 06:59:09,410 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6850464144/log.46808902._003402.job.log.tgz.1 /var/lib/boinc/slots/0/log.46808902._003402.job
[2025-10-19 08:59:49] 2025-10-19 06:59:09,417 | INFO     | adding to output.list: log.46808902._003402.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/89/log.46808902._003402.job.log.tg
[2025-10-19 08:59:49] 2025-10-19 06:59:09,417 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 08:59:49] 2025-10-19 06:59:09,417 | INFO     | summary of transferred files:
[2025-10-19 08:59:49] 2025-10-19 06:59:09,418 | INFO     |  -- lfn=log.46808902._003402.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 08:59:49] 2025-10-19 06:59:09,418 | INFO     | stage-out finished correctly
[2025-10-19 08:59:49] 2025-10-19 06:59:10,057 | INFO     | time since job start (3581s) is within the limit (172800.0s)
[2025-10-19 08:59:49] 2025-10-19 06:59:10,259 | INFO     | monitor loop #274: job 0:6850464144 is in state 'finished'
[2025-10-19 08:59:49] 2025-10-19 06:59:10,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 08:59:49] 2025-10-19 06:59:10,828 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 08:59:49] 2025-10-19 06:59:12,063 | INFO     | time since job start (3583s) is within the limit (172800.0s)
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | job 6850464144 has state=finished
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | preparing for final server update for job 6850464144 in state='finished'
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | this job has now completed (state=finished)
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | log transfer has been attempted: DONE
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | job 6850464144 has finished - writing final server update
[2025-10-19 08:59:49] 2025-10-19 06:59:12,262 | INFO     | total number of processed events: 400 (read)
[2025-10-19 08:59:49] 2025-10-19 06:59:12,263 | INFO     | executing command: lscpu
[2025-10-19 08:59:49] 2025-10-19 06:59:12,272 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 08:59:49] 2025-10-19 06:59:12,762 | INFO     | monitor loop #275: job 0:6850464144 is in state 'finished'
[2025-10-19 08:59:49] 2025-10-19 06:59:12,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 08:59:49] 2025-10-19 06:59:14,068 | INFO     | time since job start (3585s) is within the limit (172800.0s)
[2025-10-19 08:59:49] 2025-10-19 06:59:15,265 | INFO     | monitor loop #276: job 0:6850464144 is in state 'finished'
[2025-10-19 08:59:49] 2025-10-19 06:59:15,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,073 | INFO     | time since job start (3587s) is within the limit (172800.0s)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,424 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 08:59:49] 2025-10-19 06:59:16,425 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3813.9978750000005
[2025-10-19 08:59:49] 2025-10-19 06:59:16,426 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6850464144/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,426 | INFO     | extracted standard info from prmon json
[2025-10-19 08:59:49] 2025-10-19 06:59:16,426 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 08:59:49] 2025-10-19 06:59:16,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 08:59:49] 2025-10-19 06:59:16,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 08:59:49] 2025-10-19 06:59:16,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 08:59:49] 2025-10-19 06:59:16,427 | INFO     | fitting pss+swap vs Time
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | sum of square deviations: 43584073.0
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | sum of deviations: 85083532.00000006
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | mean x: 1760855448.5
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | mean y: 2556212.423076923
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | -- intersect: -3434933461.839909
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | intersect: -3434933461.839909
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | chi2: 0.023754497914614703
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | -- intersect: -3434933461.839909
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | current memory leak: 1.95 B/s (using 52 data points, chi2=0.02)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | could have reported an average CPU frequency of 3777 MHz (5 samples)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | ..............................
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . Timing measurements:
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . get job = 0 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . initial setup = 1 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . payload setup = 3 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . stage-in = 0 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . payload execution = 3560 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,428 | INFO     | . stage-out = 0 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,429 | INFO     | . log creation = 0 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,429 | INFO     | ..............................
[2025-10-19 08:59:49] 2025-10-19 06:59:16,487 | INFO     | 
[2025-10-19 08:59:49] 2025-10-19 06:59:16,487 | INFO     | job summary report
[2025-10-19 08:59:49] 2025-10-19 06:59:16,487 | INFO     | --------------------------------------------------
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | PanDA job id: 6850464144
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | task id: 46808902
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | errors: (none)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | pilot state: finished 
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | transexitcode: 0
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | exeerrorcode: 0
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | exeerrordiag: 
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | exitcode: 0
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | exitmsg: OK
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | cpuconsumptiontime: 26966 s
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | nevents: 400
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | neventsw: 0
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | pid: 1331060
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | pgrp: 1331060
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | corecount: 8
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | event service: False
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | sizes: {0: 2348847, 2: 2349109, 11: 2349137, 3567: 2374832, 3568: 2383885, 3569: 2383885, 3575: 2384239}
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | --------------------------------------------------
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | 
[2025-10-19 08:59:49] 2025-10-19 06:59:16,488 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,497 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | job 6850464144 has completed (purged errors)
[2025-10-19 08:59:49] 2025-10-19 06:59:16,498 | INFO     | overall cleanup function is called
[2025-10-19 08:59:49] 2025-10-19 06:59:17,504 | INFO     | --- collectZombieJob: --- 10, [1331060]
[2025-10-19 08:59:49] 2025-10-19 06:59:17,504 | INFO     | zombie collector waiting for pid 1331060
[2025-10-19 08:59:49] 2025-10-19 06:59:17,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 08:59:49] 2025-10-19 06:59:17,504 | INFO     | collected zombie processes
[2025-10-19 08:59:49] 2025-10-19 06:59:17,504 | INFO     | will attempt to kill all subprocesses of pid=1331060
[2025-10-19 08:59:49] 2025-10-19 06:59:17,547 | INFO     | process IDs to be killed: [1331060] (in reverse order)
[2025-10-19 08:59:49] 2025-10-19 06:59:17,565 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 08:59:49] 2025-10-19 06:59:17,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 08:59:49] 2025-10-19 06:59:17,566 | INFO     | did not find any defunct processes belonging to 1331060
[2025-10-19 08:59:49] 2025-10-19 06:59:17,567 | INFO     | did not find any defunct processes belonging to 1331060
[2025-10-19 08:59:49] 2025-10-19 06:59:17,568 | INFO     | ready for new job
[2025-10-19 08:59:49] 2025-10-19 06:59:17,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 08:59:49] 2025-10-19 06:59:17,568 | INFO     | ***************************************
[2025-10-19 08:59:49] 2025-10-19 06:59:17,568 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 08:59:49] 2025-10-19 06:59:17,568 | INFO     | ***************************************
[2025-10-19 08:59:49] 2025-10-19 06:59:17,568 | INFO     | 
[2025-10-19 08:59:49] 2025-10-19 06:59:17,569 | INFO     | architecture information:
[2025-10-19 08:59:49] 2025-10-19 06:59:17,569 | INFO     | executing command: cat /etc/os-release
[2025-10-19 08:59:49] 2025-10-19 06:59:17,574 | INFO     | cat /etc/os-release:
[2025-10-19 08:59:49] NAME="CentOS Linux"
[2025-10-19 08:59:49] VERSION="7 (Core)"
[2025-10-19 08:59:49] ID="centos"
[2025-10-19 08:59:49] ID_LIKE="rhel fedora"
[2025-10-19 08:59:49] VERSION_ID="7"
[2025-10-19 08:59:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 08:59:49] ANSI_COLOR="0;31"
[2025-10-19 08:59:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 08:59:49] HOME_URL="https://www.centos.org/"
[2025-10-19 08:59:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 08:59:49] 
[2025-10-19 08:59:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 08:59:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 08:59:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 08:59:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 08:59:49] 
[2025-10-19 08:59:49] 2025-10-19 06:59:17,574 | INFO     | ***************************************
[2025-10-19 08:59:49] 2025-10-19 06:59:18,077 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-19 08:59:49] 2025-10-19 06:59:18,083 | INFO     | sufficient remaining disk space (97822703616 B)
[2025-10-19 08:59:49] 2025-10-19 06:59:18,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 08:59:49] 2025-10-19 06:59:18,084 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 08:59:49] 2025-10-19 06:59:18,084 | INFO     | update_server=False
[2025-10-19 08:59:49] 2025-10-19 06:59:18,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 08:59:49] 2025-10-19 06:59:18,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 08:59:49] 2025-10-19 06:59:18,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 08:59:49] 2025-10-19 06:59:18,604 | INFO     | all data control threads have been joined
[2025-10-19 08:59:49] 2025-10-19 06:59:18,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 08:59:49] 2025-10-19 06:59:18,773 | INFO     | aborting loop
[2025-10-19 08:59:49] 2025-10-19 06:59:18,948 | INFO     | all job control threads have been joined
[2025-10-19 08:59:49] 2025-10-19 06:59:19,085 | INFO     | [job] retrieve thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,086 | INFO     | [job] queue monitor thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,103 | INFO     | all payload control threads have been joined
[2025-10-19 08:59:49] 2025-10-19 06:59:19,156 | INFO     | [payload] failed_post thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,524 | INFO     | [data] copytool_in thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,609 | INFO     | [data] control thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,730 | INFO     | [payload] validate_post thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,778 | INFO     | [job] job monitor thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:19,953 | INFO     | [job] control thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:20,089 | INFO     | [data] copytool_out thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:20,108 | INFO     | [payload] control thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:20,433 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:20,498 | INFO     | [job] validate thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:20,519 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:20,590 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:21,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 08:59:49] 2025-10-19 06:59:25,377 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:27,988 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-19 08:59:49] 2025-10-19 06:59:28,202 | INFO     | job.realtimelogging is not enabled
[2025-10-19 08:59:49] 2025-10-19 06:59:29,207 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 08:59:49] 2025-10-19 06:59:34,747 | INFO     | [monitor] cgroup control has ended
[2025-10-19 08:59:49] 2025-10-19 06:59:35,375 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534476699456)>', '<ExcThread(monitor, started 140533804558080)>']
[2025-10-19 08:59:49] 2025-10-19 06:59:40,401 | INFO     | all workflow threads have been joined
[2025-10-19 08:59:49] 2025-10-19 06:59:40,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 08:59:49] 2025-10-19 06:59:40,401 | INFO     | traces error code: 0
[2025-10-19 08:59:49] 2025-10-19 06:59:40,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 08:59:49] 2025-10-19 06:59:49,202 | INFO     | PID=1323801 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 08:59:49] 2025-10-19 06:59:49,207 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 08:59:49] 2025-10-19 06:59:49,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 08:59:49] 2025-10-19 06:59:49,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 08:59:49] 2025-10-19 06:59:49,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 08:59:49] 2025-10-19 06:59:49,208 | CRITICAL | thread 'MainThread' is not alive
[2025-10-19 08:59:49] 2025-10-19 06:59:49,208 | INFO     | [monitor] control thread has ended
[2025-10-19 08:59:49] 2025-10-19 06:59:49,265 [wrapper] ==== pilot stdout END ====
[2025-10-19 08:59:49] 2025-10-19 06:59:49,266 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 08:59:49] 2025-10-19 06:59:49,267 [wrapper] pilotpid: 1323801
[2025-10-19 08:59:49] 2025-10-19 06:59:49,268 [wrapper] Pilot exit status: 0
[2025-10-19 08:59:49] 2025-10-19 06:59:49,272 [wrapper] pandaids: 6850464144
[2025-10-19 08:59:49] 2025-10-19 06:59:49,282 [wrapper] cleanup supervisor_pilot 1346465 1323802
[2025-10-19 08:59:49] 2025-10-19 06:59:49,283 [wrapper] Test setup, not cleaning
[2025-10-19 08:59:49] 2025-10-19 06:59:49,284 [wrapper] apfmon messages muted
[2025-10-19 08:59:49] 2025-10-19 06:59:49,285 [wrapper] ==== wrapper stdout END ====
[2025-10-19 08:59:49] 2025-10-19 06:59:49,286 [wrapper] ==== wrapper stderr END ====
[2025-10-19 08:59:49]  *** Error codes and diagnostics ***
[2025-10-19 08:59:49]     "exeErrorCode": 0,
[2025-10-19 08:59:49]     "exeErrorDiag": "",
[2025-10-19 08:59:49]     "pilotErrorCode": 0,
[2025-10-19 08:59:49]     "pilotErrorDiag": "",
[2025-10-19 08:59:49]  *** Listing of results directory ***
[2025-10-19 08:59:49] total 328408
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc    557409 Oct 18 19:39 pilot3.tar.gz
[2025-10-19 08:59:49] -rwx------ 1 boinc boinc     36292 Oct 18 19:52 runpilot2-wrapper.sh
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc      5112 Oct 18 19:52 queuedata.json
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc       100 Oct 19 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 08:59:49] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 07:59 run_atlas
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc       105 Oct 19 07:59 job.xml
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc      6325 Oct 19 07:59 init_data.xml
[2025-10-19 08:59:49] -rw-r--r-- 2 boinc boinc 187776535 Oct 19 07:59 EVNT.46808900._000139.pool.root.1
[2025-10-19 08:59:49] -rw-r--r-- 2 boinc boinc     15120 Oct 19 07:59 start_atlas.sh
[2025-10-19 08:59:49] drwxrwx--x 2 boinc boinc        68 Oct 19 07:59 shared
[2025-10-19 08:59:49] -rw-r--r-- 2 boinc boinc    569667 Oct 19 07:59 input.tar.gz
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc         0 Oct 19 07:59 boinc_lockfile
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc      2502 Oct 19 07:59 pandaJob.out
[2025-10-19 08:59:49] -rw------- 1 boinc boinc    976750 Oct 19 07:59 agis_schedconf.cvmfs.json
[2025-10-19 08:59:49] -rw------- 1 boinc boinc   1560740 Oct 19 07:59 agis_ddmendpoints.agis.ALL.json
[2025-10-19 08:59:49] drwx------ 5 boinc boinc      4096 Oct 19 07:59 pilot3
[2025-10-19 08:59:49] -rw------- 1 boinc boinc 142966471 Oct 19 08:58 HITS.46808902._003402.pool.root.1
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc       529 Oct 19 08:58 boinc_task_state.xml
[2025-10-19 08:59:49] -rw------- 1 boinc boinc        95 Oct 19 08:58 pilot_heartbeat.json
[2025-10-19 08:59:49] -rw------- 1 boinc boinc      1009 Oct 19 08:59 memory_monitor_summary.json
[2025-10-19 08:59:49] -rw------- 1 boinc boinc    296012 Oct 19 08:59 log.46808902._003402.job.log.tgz.1
[2025-10-19 08:59:49] -rw------- 1 boinc boinc      7758 Oct 19 08:59 heartbeat.json
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc      8192 Oct 19 08:59 boinc_mmap_file
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc        27 Oct 19 08:59 wrapper_checkpoint.txt
[2025-10-19 08:59:49] -rw------- 1 boinc boinc       817 Oct 19 08:59 pilotlog.txt
[2025-10-19 08:59:49] -rw------- 1 boinc boinc    536432 Oct 19 08:59 log.46808902._003402.job.log.1
[2025-10-19 08:59:49] -rw------- 1 boinc boinc       357 Oct 19 08:59 output.list
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc       620 Oct 19 08:59 runtime_log
[2025-10-19 08:59:49] -rw------- 1 boinc boinc    849920 Oct 19 08:59 result.tar.gz
[2025-10-19 08:59:49] -rw------- 1 boinc boinc       649 Oct 19 08:59 sqGODmnHQU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpfcMDmtKSBSn.diag
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc      8716 Oct 19 08:59 runtime_log.err
[2025-10-19 08:59:49] -rw-r--r-- 1 boinc boinc     22066 Oct 19 08:59 stderr.txt
[2025-10-19 08:59:49] HITS file was successfully produced:
[2025-10-19 08:59:49] -rw------- 1 boinc boinc 142966471 Oct 19 08:58 shared/HITS.pool.root.1
[2025-10-19 08:59:49]  *** Contents of shared directory: ***
[2025-10-19 08:59:49] total 324400
[2025-10-19 08:59:49] -rw-r--r-- 2 boinc boinc 187776535 Oct 19 07:59 ATLAS.root_0
[2025-10-19 08:59:49] -rw-r--r-- 2 boinc boinc     15120 Oct 19 07:59 start_atlas.sh
[2025-10-19 08:59:49] -rw-r--r-- 2 boinc boinc    569667 Oct 19 07:59 input.tar.gz
[2025-10-19 08:59:49] -rw------- 1 boinc boinc 142966471 Oct 19 08:58 HITS.pool.root.1
[2025-10-19 08:59:49] -rw------- 1 boinc boinc    849920 Oct 19 08:59 result.tar.gz
08:59:50 (1320109): run_atlas exited; CPU time 27003.731600
08:59:50 (1320109): called boinc_finish(0)

</stderr_txt>
]]>

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