Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-20 09:19:29 (4032): vboxwrapper version 26210
2025-10-20 09:19:29 (4032): BOINC client version: 8.2.4
2025-10-20 09:19:30 (4032): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-20 09:19:30 (4032): Successfully copied 'init_data.xml' to the shared directory.
2025-10-20 09:19:30 (4032): Create VM. (boinc_5a0a171e22df0a42, slot#1)
2025-10-20 09:19:31 (4032): Setting Memory Size for VM. (6600MB)
2025-10-20 09:19:31 (4032): Setting CPU Count for VM. (4)
2025-10-20 09:19:31 (4032): Setting Chipset Options for VM.
2025-10-20 09:19:32 (4032): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-20 09:19:32 (4032): Setting Boot Options for VM.
2025-10-20 09:19:33 (4032): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-20 09:19:33 (4032): Enabling VM Network Access.
2025-10-20 09:19:33 (4032): Disabling USB Support for VM.
2025-10-20 09:19:33 (4032): Disabling COM Port Support for VM.
2025-10-20 09:19:34 (4032): Disabling LPT Port Support for VM.
2025-10-20 09:19:34 (4032): Disabling Audio Support for VM.
2025-10-20 09:19:34 (4032): Disabling Clipboard Support for VM.
2025-10-20 09:19:34 (4032): Disabling Drag and Drop Support for VM.
2025-10-20 09:19:35 (4032): Adding storage controller(s) to VM.
2025-10-20 09:19:35 (4032): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-20 09:19:35 (4032): Adding VirtualBox Guest Additions to VM.
2025-10-20 09:19:36 (4032): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-20 09:19:36 (4032): forwarding host port 61093 to guest port 80
2025-10-20 09:19:36 (4032): Enabling remote desktop for VM.
2025-10-20 09:19:37 (4032): Enabling shared directory for VM.
2025-10-20 09:19:37 (4032): Starting VM using VBoxManage interface. (boinc_5a0a171e22df0a42, slot#1)
2025-10-20 09:19:43 (4032): Successfully started VM. (PID = '15164')
2025-10-20 09:19:43 (4032): Reporting VM Process ID to BOINC.
2025-10-20 09:19:43 (4032): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-20 09:19:43 (4032): Guest Log: CPUID EDX: 0x178bfbff
2025-10-20 09:19:43 (4032): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-20 09:19:43 (4032): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-20 09:19:43 (4032): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-20 09:19:43 (4032): Detected: Web Application Enabled (http://localhost:61093)
2025-10-20 09:19:43 (4032): Detected: Remote Desktop Enabled (localhost:61094)
2025-10-20 09:19:43 (4032): Preference change detected
2025-10-20 09:19:43 (4032): Setting CPU throttle for VM. (100%)
2025-10-20 09:19:44 (4032): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-20 09:19:46 (4032): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-20 09:19:46 (4032): Guest Log: BIOS: Booting from Hard Disk...
2025-10-20 09:19:49 (4032): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-20 09:19:49 (4032): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-20 09:19:49 (4032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-20 09:19:55 (4032): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-20 09:19:55 (4032): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-20 09:20:01 (4032): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000168 main     Log opened 2025-10-20T09:19:58.610172000Z
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000291 main     OS Product: Linux
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000340 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000373 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000429 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000430 main     Process ID: 1373
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.000432 main     Package type: LINUX_64BITS_GENERIC
2025-10-20 09:20:01 (4032): Guest Log: 00:00:00.001715 main     5.2.32 r132073 started. Verbose level = 0
2025-10-20 09:20:01 (4032): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-20 09:20:01 (4032): Guest Log: [INFO] Mounting shared directory
2025-10-20 09:20:01 (4032): Guest Log: [INFO] Checking for init_data.xml
2025-10-20 09:20:11 (4032): Guest Log: 00:00:10.043320 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 347 011 000ns (GuestNow=1 760 948 410 267 612 000 ns GuestLast=1 760 951 998 614 623 000 ns fSetTimeLastLoop=true )
2025-10-20 09:20:35 (4032): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-20 09:20:35 (4032): Guest Log: [INFO] Detected branch: prod
2025-10-20 09:20:36 (4032): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-20 09:20:36 (4032): Guest Log: Copying input files
2025-10-20 09:20:38 (4032): Guest Log: Copied input files into RunAtlas.
2025-10-20 09:20:38 (4032): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.130:3128 - will set in /etc/cvmfs/default.local
2025-10-20 09:21:46 (4032): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-20 09:21:46 (4032): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-20 09:21:46 (4032): Guest Log: 2.6.3.0 1675 1 31636 151916 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-10-20 09:21:47 (4032): Guest Log: copied the webapp to /var/www
2025-10-20 09:21:47 (4032): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-20 09:21:47 (4032): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-20 09:21:47 (4032): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-20 09:21:47 (4032): Guest Log:  *** Starting ATLAS job. (PandaID=6850530029 taskID=46808902) ***
2025-10-20 11:00:00 (4032): Status Report: Elapsed Time: '6000.000000'
2025-10-20 11:00:00 (4032): Status Report: CPU Time: '18502.218750'
2025-10-20 12:40:29 (4032): Status Report: Elapsed Time: '12000.000000'
2025-10-20 12:40:29 (4032): Status Report: CPU Time: '42026.937500'
2025-10-20 13:22:58 (4032): Guest Log:  *** Job finished ***
2025-10-20 13:22:58 (4032): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:29,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:29,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:51,394 | INFO     | [monitor] cgroup control has ended
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:52,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827456644928)>', '<ExcThread(monitor, started 139826837821184)>']
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:52,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:52,649 | INFO     | [monitor] control thread has ended
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,473 | INFO     | all workflow threads have been joined
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,473 | INFO     | end of generic workflow (traces error code: 0)
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,473 | INFO     | traces error code: 0
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,571 [wrapper] ==== pilot stdout END ====
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,577 [wrapper] ==== wrapper stdout RESUME ====
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,583 [wrapper] pilotpid: 6140
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:57,588 [wrapper] Pilot exit status: 0
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:58,050 [wrapper] pandaids: 6850530029
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:58,084 [wrapper] cleanup supervisor_pilot 13680 6141
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:58,092 [wrapper] Test setup, not cleaning
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:58,098 [wrapper] apfmon messages muted
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:58,104 [wrapper] ==== wrapper stdout END ====
2025-10-20 13:22:58 (4032): Guest Log: 2025-10-20 12:22:58,110 [wrapper] ==== wrapper stderr END ====
2025-10-20 13:22:58 (4032): Guest Log:  *** Error codes and diagnostics ***
2025-10-20 13:22:58 (4032): Guest Log:     "exeErrorCode": 0,
2025-10-20 13:22:58 (4032): Guest Log:     "exeErrorDiag": "",
2025-10-20 13:22:58 (4032): Guest Log:     "pilotErrorCode": 0,
2025-10-20 13:22:58 (4032): Guest Log:     "pilotErrorDiag": "",
2025-10-20 13:22:58 (4032): Guest Log:  *** Listing of results directory ***
2025-10-20 13:22:58 (4032): Guest Log: total 153368
2025-10-20 13:22:58 (4032): Guest Log: -rw-r--r--. 1 atlas atlas    563267 Oct  7 07:02 pilot3.tar.gz
2025-10-20 13:22:58 (4032): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 18 19:32 queuedata.json
2025-10-20 13:22:58 (4032): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 18 19:35 runpilot2-wrapper.sh
2025-10-20 13:22:58 (4032): Guest Log: -rwxr-xr-x. 1 atlas atlas      9544 Oct 20 08:20 init_data.xml
2025-10-20 13:22:58 (4032): Guest Log: -rwxr-xr-x. 1 atlas atlas    576700 Oct 20 08:20 input.tar.gz
2025-10-20 13:22:58 (4032): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 20 08:20 start_atlas.sh
2025-10-20 13:22:58 (4032): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 20 08:20 EVNT.46808900._000182.pool.root.1 -> /data/./ATLAS.root_0
2025-10-20 13:22:58 (4032): Guest Log: -rw-r--r--. 1 atlas atlas      2502 Oct 20 08:21 pandaJob.out
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas    976402 Oct 20 08:26 agis_schedconf.cvmfs.json
2025-10-20 13:22:58 (4032): Guest Log: drwx------. 4 atlas atlas      4096 Oct 20 08:26 pilot3
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas 148660102 Oct 20 12:21 HITS.46808902._004463.pool.root.1
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 20 12:21 memory_monitor_summary.json
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 20 12:21 agis_ddmendpoints.agis.ALL.json
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas    383436 Oct 20 12:21 log.46808902._004463.job.log.tgz.1
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas        95 Oct 20 12:21 pilot_heartbeat.json
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas      7825 Oct 20 12:21 heartbeat.json
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 20 12:22 pilotlog.txt
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas   1891306 Oct 20 12:22 log.46808902._004463.job.log.1
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas       357 Oct 20 12:22 output.list
2025-10-20 13:22:58 (4032): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 20 12:22 runtime_log
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas   2293760 Oct 20 12:22 result.tar.gz
2025-10-20 13:22:58 (4032): Guest Log: -rw-r--r--. 1 atlas atlas      8643 Oct 20 12:22 runtime_log.err
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas       659 Oct 20 12:22 qqQODmrsRU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFMyNDmaKxCEo.diag
2025-10-20 13:22:58 (4032): Guest Log: Looking for outputfile HITS.46808902._004463.pool.root.1
2025-10-20 13:22:58 (4032): Guest Log: HITS file was successfully produced
2025-10-20 13:22:58 (4032): Guest Log: -rw-------. 1 atlas atlas 148660102 Oct 20 12:21 /home/atlas/RunAtlas/HITS.46808902._004463.pool.root.1
2025-10-20 13:22:59 (4032): Guest Log: Successfully finished the ATLAS job!
2025-10-20 13:22:59 (4032): Guest Log: Copying the results back to the shared directory!
2025-10-20 13:22:59 (4032): Guest Log:  *** Contents of shared directory: ***
2025-10-20 13:22:59 (4032): Guest Log: total 332052
2025-10-20 13:22:59 (4032): Guest Log: -rwxrwxrwx. 1 root root 188459761 Oct 20 08:19 ATLAS.root_0
2025-10-20 13:22:59 (4032): Guest Log: -rwxrwxrwx. 1 root root 148660102 Oct 20 12:22 HITS.pool.root.1
2025-10-20 13:22:59 (4032): Guest Log: -rwxrwxrwx. 1 root root      9544 Oct 20 08:19 init_data.xml
2025-10-20 13:22:59 (4032): Guest Log: -rwxrwxrwx. 1 root root    576700 Oct 18 23:06 input.tar.gz
2025-10-20 13:22:59 (4032): Guest Log: -rwxrwxrwx. 1 root root   2293760 Oct 20 12:22 result.tar.gz
2025-10-20 13:22:59 (4032): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 18 23:06 start_atlas.sh
2025-10-20 13:22:59 (4032): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-20 13:22:59 (4032): VM Completion File Detected.
2025-10-20 13:22:59 (4032): Powering off VM.
2025-10-20 13:23:00 (4032): Successfully stopped VM.
2025-10-20 13:23:00 (4032): Deregistering VM. (boinc_5a0a171e22df0a42, slot#1)
2025-10-20 13:23:01 (4032): Removing network bandwidth throttle group from VM.
2025-10-20 13:23:01 (4032): Removing VM from VirtualBox.
2025-10-20 13:23:06 (4032): called boinc_finish(0)

</stderr_txt>
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