Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-19 04:58:29 (3588472): vboxwrapper version 26210
2025-10-19 04:58:29 (3588472): BOINC client version: 8.2.5
2025-10-19 04:58:29 (3588472): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-10-19 04:58:30 (3588472): Successfully copied 'init_data.xml' to the shared directory.
2025-10-19 04:58:30 (3588472): Create VM. (boinc_a5a5a47a1770e5f4, slot#99)
2025-10-19 04:58:30 (3588472): Setting Memory Size for VM. (4096MB)
2025-10-19 04:58:30 (3588472): Setting CPU Count for VM. (1)
2025-10-19 04:58:31 (3588472): Setting Chipset Options for VM.
2025-10-19 04:58:31 (3588472): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-19 04:58:31 (3588472): Setting Boot Options for VM.
2025-10-19 04:58:32 (3588472): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-19 04:58:32 (3588472): Enabling VM Network Access.
2025-10-19 04:58:32 (3588472): Disabling USB Support for VM.
2025-10-19 04:58:32 (3588472): Disabling COM Port Support for VM.
2025-10-19 04:58:33 (3588472): Disabling LPT Port Support for VM.
2025-10-19 04:58:33 (3588472): Disabling Audio Support for VM.
2025-10-19 04:58:33 (3588472): Disabling Clipboard Support for VM.
2025-10-19 04:58:33 (3588472): Disabling Drag and Drop Support for VM.
2025-10-19 04:58:34 (3588472): Adding storage controller(s) to VM.
2025-10-19 04:58:34 (3588472): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-19 04:58:34 (3588472): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-19 04:58:35 (3588472): forwarding host port 47207 to guest port 80
2025-10-19 04:58:35 (3588472): Enabling remote desktop for VM.
2025-10-19 04:58:35 (3588472): Enabling shared directory for VM.
2025-10-19 04:58:36 (3588472): Starting VM using VBoxManage interface. (boinc_a5a5a47a1770e5f4, slot#99)
2025-10-19 04:58:38 (3588472): Successfully started VM. (PID = '3588909')
2025-10-19 04:58:38 (3588472): Reporting VM Process ID to BOINC.
2025-10-19 04:58:38 (3588472): Guest Log: BIOS: VirtualBox 7.0.20
2025-10-19 04:58:38 (3588472): Guest Log: CPUID EDX: 0x178bfbff
2025-10-19 04:58:38 (3588472): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-19 04:58:38 (3588472): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-19 04:58:38 (3588472): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-19 04:58:38 (3588472): Detected: Web Application Enabled (http://localhost:47207)
2025-10-19 04:58:38 (3588472): Detected: Remote Desktop Enabled (localhost:43195)
2025-10-19 04:58:38 (3588472): Preference change detected
2025-10-19 04:58:38 (3588472): Setting CPU throttle for VM. (100%)
2025-10-19 04:58:38 (3588472): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-19 04:58:40 (3588472): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-19 04:58:40 (3588472): Guest Log: BIOS: Booting from Hard Disk...
2025-10-19 04:58:43 (3588472): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-19 04:58:43 (3588472): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-19 04:58:43 (3588472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-19 04:58:47 (3588472): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-19 04:58:47 (3588472): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-19 04:58:58 (3588472): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000249 main     Log opened 2025-10-19T02:58:55.325828000Z
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000385 main     OS Product: Linux
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000410 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000432 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000451 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000452 main     Process ID: 1241
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.000452 main     Package type: LINUX_64BITS_GENERIC
2025-10-19 04:58:58 (3588472): Guest Log: 00:00:00.001910 main     5.2.32 r132073 started. Verbose level = 0
2025-10-19 04:58:58 (3588472): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-19 04:58:58 (3588472): Guest Log: [INFO] Mounting shared directory
2025-10-19 04:58:58 (3588472): Guest Log: [INFO] Checking for init_data.xml
2025-10-19 04:59:00 (3588472): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-19 04:59:00 (3588472): Guest Log: [INFO] Detected branch: prod
2025-10-19 04:59:00 (3588472): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-19 04:59:00 (3588472): Guest Log: Copying input files
2025-10-19 04:59:01 (3588472): Guest Log: Copied input files into RunAtlas.
2025-10-19 04:59:01 (3588472): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-10-19 04:59:09 (3588472): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-19 04:59:09 (3588472): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-19 04:59:09 (3588472): Guest Log: 2.6.3.0 1510 0 31524 151872 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-10-19 04:59:10 (3588472): Guest Log: copied the webapp to /var/www
2025-10-19 04:59:10 (3588472): Guest Log: core_number=1
2025-10-19 04:59:10 (3588472): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-19 04:59:10 (3588472): Guest Log:  *** Starting ATLAS job. (PandaID=6839384945 taskID=46376905) ***
2025-10-19 06:37:38 (3588472): Status Report: Elapsed Time: '6000.000000'
2025-10-19 06:37:38 (3588472): Status Report: CPU Time: '5768.560000'
2025-10-19 08:16:39 (3588472): Status Report: Elapsed Time: '12000.000000'
2025-10-19 08:16:39 (3588472): Status Report: CPU Time: '11714.770000'
2025-10-19 09:55:39 (3588472): Status Report: Elapsed Time: '18000.000000'
2025-10-19 09:55:39 (3588472): Status Report: CPU Time: '17661.030000'
2025-10-19 11:34:39 (3588472): Status Report: Elapsed Time: '24000.000000'
2025-10-19 11:34:39 (3588472): Status Report: CPU Time: '23607.710000'
2025-10-19 13:13:40 (3588472): Status Report: Elapsed Time: '30000.000000'
2025-10-19 13:13:40 (3588472): Status Report: CPU Time: '29554.150000'
2025-10-19 14:52:40 (3588472): Status Report: Elapsed Time: '36000.000000'
2025-10-19 14:52:40 (3588472): Status Report: CPU Time: '35500.700000'
2025-10-19 14:58:16 (3588472): Guest Log:  *** Job finished ***
2025-10-19 14:58:16 (3588472): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:57:52,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:57:52,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:08,550 | INFO     | [monitor] cgroup control has ended
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:10,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140590680356672)>', '<ExcThread(monitor, started 140590100502272)>']
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:10,788 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:10,789 | INFO     | [monitor] control thread has ended
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,034 | INFO     | all workflow threads have been joined
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,034 | INFO     | end of generic workflow (traces error code: 0)
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,035 | INFO     | traces error code: 0
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,147 [wrapper] ==== pilot stdout END ====
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,151 [wrapper] ==== wrapper stdout RESUME ====
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,155 [wrapper] pilotpid: 5850
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,159 [wrapper] Pilot exit status: 0
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,205 [wrapper] pandaids: 6839384945
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,240 [wrapper] cleanup supervisor_pilot 15757 5851
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,245 [wrapper] Test setup, not cleaning
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,250 [wrapper] apfmon messages muted
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,254 [wrapper] ==== wrapper stdout END ====
2025-10-19 14:58:16 (3588472): Guest Log: 2025-10-19 12:58:15,258 [wrapper] ==== wrapper stderr END ====
2025-10-19 14:58:16 (3588472): Guest Log:  *** Error codes and diagnostics ***
2025-10-19 14:58:16 (3588472): Guest Log:     "exeErrorCode": 0,
2025-10-19 14:58:16 (3588472): Guest Log:     "exeErrorDiag": "",
2025-10-19 14:58:16 (3588472): Guest Log:     "pilotErrorCode": 0,
2025-10-19 14:58:16 (3588472): Guest Log:     "pilotErrorDiag": "",
2025-10-19 14:58:16 (3588472): Guest Log:  *** Listing of results directory ***
2025-10-19 14:58:16 (3588472): Guest Log: total 183572
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 19:27 pilot3.tar.gz
2025-10-19 14:58:16 (3588472): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 19:36 runpilot2-wrapper.sh
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 19:36 queuedata.json
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 19 02:58 start_atlas.sh
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas      9393 Oct 19 02:58 init_data.xml
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas    569672 Oct 19 02:58 input.tar.gz
2025-10-19 14:58:16 (3588472): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 19 02:58 EVNT.46376901._004398.pool.root.1 -> /data/./ATLAS.root_0
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas      2520 Oct 19 02:59 pandaJob.out
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas    976742 Oct 19 02:59 agis_schedconf.cvmfs.json
2025-10-19 14:58:16 (3588472): Guest Log: drwx------. 5 atlas atlas      4096 Oct 19 02:59 pilot3
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas 173053639 Oct 19 12:56 HITS.46376905._136245.pool.root.1
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas        95 Oct 19 12:57 pilot_heartbeat.json
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 19 12:57 memory_monitor_summary.json
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 19 12:57 agis_ddmendpoints.agis.ALL.json
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas    644111 Oct 19 12:57 log.46376905._136245.job.log.tgz.1
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas      7823 Oct 19 12:57 heartbeat.json
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 19 12:58 pilotlog.txt
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas   4900643 Oct 19 12:58 log.46376905._136245.job.log.1
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas       357 Oct 19 12:58 output.list
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 19 12:58 runtime_log
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas   5560320 Oct 19 12:58 result.tar.gz
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 atlas atlas      8516 Oct 19 12:58 runtime_log.err
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas       657 Oct 19 12:58 eP9KDmy5XR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmSUQMDmVdRd6m.diag
2025-10-19 14:58:16 (3588472): Guest Log: Looking for outputfile HITS.46376905._136245.pool.root.1
2025-10-19 14:58:16 (3588472): Guest Log: HITS file was successfully produced
2025-10-19 14:58:16 (3588472): Guest Log: -rw-------. 1 atlas atlas 173053639 Oct 19 12:56 /home/atlas/RunAtlas/HITS.46376905._136245.pool.root.1
2025-10-19 14:58:16 (3588472): Guest Log: Successfully finished the ATLAS job!
2025-10-19 14:58:16 (3588472): Guest Log: Copying the results back to the shared directory!
2025-10-19 14:58:16 (3588472): Guest Log:  *** Contents of shared directory: ***
2025-10-19 14:58:16 (3588472): Guest Log: total 216548
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 root root 215573899 Oct 19 02:58 ATLAS.root_0
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 root root      9393 Oct 19 02:58 init_data.xml
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 root root    569672 Oct 19 02:58 input.tar.gz
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 root root   5560320 Oct 19 12:58 result.tar.gz
2025-10-19 14:58:16 (3588472): Guest Log: -rw-r--r--. 1 root root     15120 Oct 19 02:58 start_atlas.sh
2025-10-19 14:58:16 (3588472): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-19 14:58:16 (3588472): VM Completion File Detected.
2025-10-19 14:58:16 (3588472): Powering off VM.
2025-10-19 14:58:17 (3588472): Successfully stopped VM.
2025-10-19 14:58:17 (3588472): Deregistering VM. (boinc_a5a5a47a1770e5f4, slot#99)
2025-10-19 14:58:17 (3588472): Removing network bandwidth throttle group from VM.
2025-10-19 14:58:17 (3588472): Removing VM from VirtualBox.
2025-10-19 14:58:22 (3588472): called boinc_finish(0)

</stderr_txt>
]]>

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