Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:14:26 (252028): wrapper (7.7.26015): starting
03:14:26 (252028): wrapper: running run_atlas (--nthreads 4)
[2025-10-20 03:14:27] Arguments: --nthreads 4
[2025-10-20 03:14:27] Threads: 4
[2025-10-20 03:14:27] Checking for CVMFS
[2025-10-20 03:14:27] No cvmfs_config command found, will try listing directly
[2025-10-20 03:14:27] CVMFS is ok
[2025-10-20 03:14:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-20 03:14:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-20 03:14:27] Further information can be found at the LHC@home message board.
[2025-10-20 03:14:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 03:14:27] Checking for apptainer binary...
[2025-10-20 03:14:27] which: no apptainer in ((null))
[2025-10-20 03:14:27] apptainer is not installed, using version from CVMFS
[2025-10-20 03:14:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 03:14:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-10-20 03:14:27] apptainer works
[2025-10-20 03:14:27] Set ATHENA_PROC_NUMBER=4
[2025-10-20 03:14:27] Set ATHENA_CORE_NUMBER=4
[2025-10-20 03:14:27] Starting ATLAS job with PandaID=6850362584
[2025-10-20 03:14:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 05:09:09]  *** The last 200 lines of the pilot log: ***
[2025-10-20 05:09:09] 2025-10-20 02:55:32,647 | INFO     | PID=263295 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-20 05:09:09] 2025-10-20 02:55:32,647 | INFO     | .. there are 7 such processes running
[2025-10-20 05:09:09] 2025-10-20 02:55:32,665 | INFO     | job 6850362584 has state=finished
[2025-10-20 05:09:09] 2025-10-20 02:55:32,665 | INFO     | preparing for final server update for job 6850362584 in state='finished'
[2025-10-20 05:09:09] 2025-10-20 02:55:32,666 | INFO     | this job has now completed (state=finished)
[2025-10-20 05:09:09] 2025-10-20 02:55:32,666 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-20 05:09:09] 2025-10-20 02:55:32,666 | INFO     | log transfer has been attempted: DONE
[2025-10-20 05:09:09] 2025-10-20 02:55:32,666 | INFO     | job 6850362584 has finished - writing final server update
[2025-10-20 05:09:09] 2025-10-20 02:55:32,667 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2408938/.job.ad'
[2025-10-20 05:09:09] 2025-10-20 02:55:32,667 | INFO     | total number of processed events: 400 (read)
[2025-10-20 05:09:09] 2025-10-20 02:55:32,668 | INFO     | executing command: lscpu
[2025-10-20 05:09:09] 2025-10-20 02:55:32,773 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-20 05:09:09] 2025-10-20 02:55:33,648 | INFO     | time since job start (6052s) is within the limit (172800.0s)
[2025-10-20 05:09:09] 2025-10-20 02:55:35,654 | INFO     | time since job start (6054s) is within the limit (172800.0s)
[2025-10-20 05:09:09] 2025-10-20 02:55:35,912 | WARNING  | process 286499 can no longer be monitored (due to stat problems) - aborting
[2025-10-20 05:09:09] 2025-10-20 02:55:35,912 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6850362584/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 05:09:09] 2025-10-20 02:55:35,913 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6850362584/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 05:09:09] 2025-10-20 02:55:35,913 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-20 05:09:09] 2025-10-20 02:55:35,914 | WARNING  | maxPSS not found in memory monitor output
[2025-10-20 05:09:09] 2025-10-20 02:55:35,914 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1995122 B
[2025-10-20 05:09:09] 2025-10-20 02:55:35,914 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15406 B
[2025-10-20 05:09:09] 2025-10-20 02:55:35,914 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-10-20 05:09:09] 2025-10-20 02:55:37,659 | INFO     | time since job start (6056s) is within the limit (172800.0s)
[2025-10-20 05:09:09] 2025-10-20 02:55:39,661 | INFO     | time since job start (6058s) is within the limit (172800.0s)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,140 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-20 05:09:09] 2025-10-20 02:55:40,162 | INFO     | sufficient remaining disk space (3366815006720 B)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,163 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,165 | INFO     | size of work directory /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6850362584: 2301615 B (within 2537553920 B limit)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,165 | INFO     | pfn file=/scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6850362584/HITS.46809188._002360.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,166 | INFO     | total size of present files: 0 B (workdir size: 2301615 B)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,166 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6850362584/HITS.46809188._002360.pool.root.1 since it does not exist
[2025-10-20 05:09:09] 2025-10-20 02:55:40,173 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2731.6079921875
[2025-10-20 05:09:09] 2025-10-20 02:55:40,207 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6850362584/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,208 | INFO     | extracted standard info from prmon json
[2025-10-20 05:09:09] 2025-10-20 02:55:40,208 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 05:09:09] 2025-10-20 02:55:40,208 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 05:09:09] 2025-10-20 02:55:40,209 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 05:09:09] 2025-10-20 02:55:40,209 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 05:09:09] 2025-10-20 02:55:40,211 | INFO     | fitting pss+swap vs Time
[2025-10-20 05:09:09] 2025-10-20 02:55:40,212 | INFO     | sum of square deviations: 241429643.0
[2025-10-20 05:09:09] 2025-10-20 02:55:40,212 | INFO     | sum of deviations: -2336591122.5
[2025-10-20 05:09:09] 2025-10-20 02:55:40,212 | INFO     | mean x: 1760925995.5
[2025-10-20 05:09:09] 2025-10-20 02:55:40,213 | INFO     | mean y: 2350789.6413043477
[2025-10-20 05:09:09] 2025-10-20 02:55:40,213 | INFO     | -- intersect: 17044848128.979105
[2025-10-20 05:09:09] 2025-10-20 02:55:40,213 | INFO     | intersect: 17044848128.979105
[2025-10-20 05:09:09] 2025-10-20 02:55:40,213 | INFO     | chi2: 0.004327903184615156
[2025-10-20 05:09:09] 2025-10-20 02:55:40,213 | INFO     | -- intersect: 17044848128.979105
[2025-10-20 05:09:09] 2025-10-20 02:55:40,213 | INFO     | current memory leak: -9.68 B/s (using 92 data points, chi2=0.00)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,214 | INFO     | could have reported an average CPU frequency of 2746 MHz (7 samples)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,214 | INFO     | ..............................
[2025-10-20 05:09:09] 2025-10-20 02:55:40,214 | INFO     | . Timing measurements:
[2025-10-20 05:09:09] 2025-10-20 02:55:40,214 | INFO     | . get job = 0 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,214 | INFO     | . initial setup = 1 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,214 | INFO     | . payload setup = 8 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,215 | INFO     | . stage-in = 0 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,215 | INFO     | . payload execution = 6018 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,215 | INFO     | . stage-out = 0 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,215 | INFO     | . log creation = 0 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,215 | INFO     | ..............................
[2025-10-20 05:09:09] 2025-10-20 02:55:40,729 | INFO     | 
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | job summary report
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | --------------------------------------------------
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | PanDA job id: 6850362584
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | task id: 46809188
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | errors: (none)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | pilot state: finished 
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | transexitcode: 0
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | exeerrorcode: 0
[2025-10-20 05:09:09] 2025-10-20 02:55:40,730 | INFO     | exeerrordiag: 
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | exitcode: 0
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | exitmsg: OK
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | cpuconsumptiontime: 22886 s
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | nevents: 400
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | neventsw: 0
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | pid: 286499
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | pgrp: 286499
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | corecount: 4
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | event service: False
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | sizes: {0: 2348673, 1: 2348872, 7: 2349134, 11: 2349162, 6030: 2376217, 6031: 2385239, 6032: 2385423, 6041: 2385645}
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | --------------------------------------------------
[2025-10-20 05:09:09] 2025-10-20 02:55:40,731 | INFO     | 
[2025-10-20 05:09:09] 2025-10-20 02:55:40,732 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-10-20 05:09:09] 2025-10-20 02:55:40,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | job 6850362584 has completed (purged errors)
[2025-10-20 05:09:09] 2025-10-20 02:55:40,760 | INFO     | overall cleanup function is called
[2025-10-20 05:09:09] 2025-10-20 02:55:40,940 | INFO     | number of running child processes to parent process 286499: 1
[2025-10-20 05:09:09] 2025-10-20 02:55:40,940 | INFO     | maximum number of monitored processes: 6
[2025-10-20 05:09:09] 2025-10-20 02:55:40,940 | INFO     | aborting job monitoring since job object (job id=6850362584) has expired
[2025-10-20 05:09:09] 2025-10-20 02:55:41,770 | INFO     | --- collectZombieJob: --- 10, [286499]
[2025-10-20 05:09:09] 2025-10-20 02:55:41,771 | INFO     | zombie collector waiting for pid 286499
[2025-10-20 05:09:09] 2025-10-20 02:55:41,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 05:09:09] 2025-10-20 02:55:41,771 | INFO     | collected zombie processes
[2025-10-20 05:09:09] 2025-10-20 02:55:41,771 | INFO     | will attempt to kill all subprocesses of pid=286499
[2025-10-20 05:09:09] 2025-10-20 02:55:42,450 | INFO     | process IDs to be killed: [286499] (in reverse order)
[2025-10-20 05:09:09] 2025-10-20 02:55:42,670 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 05:09:09] 2025-10-20 02:55:42,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 05:09:09] 2025-10-20 02:55:42,705 | INFO     | did not find any defunct processes belonging to 286499
[2025-10-20 05:09:09] 2025-10-20 02:55:42,734 | INFO     | did not find any defunct processes belonging to 286499
[2025-10-20 05:09:09] 2025-10-20 02:55:42,735 | INFO     | ready for new job
[2025-10-20 05:09:09] 2025-10-20 02:55:42,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 05:09:09] 2025-10-20 02:55:42,737 | INFO     | ***************************************
[2025-10-20 05:09:09] 2025-10-20 02:55:42,737 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 05:09:09] 2025-10-20 02:55:42,737 | INFO     | ***************************************
[2025-10-20 05:09:09] 2025-10-20 02:55:42,737 | INFO     | 
[2025-10-20 05:09:09] 2025-10-20 02:55:42,746 | INFO     | architecture information:
[2025-10-20 05:09:09] 2025-10-20 02:55:42,746 | INFO     | executing command: cat /etc/os-release
[2025-10-20 05:09:09] 2025-10-20 02:55:42,771 | INFO     | cat /etc/os-release:
[2025-10-20 05:09:09] NAME="CentOS Linux"
[2025-10-20 05:09:09] VERSION="7 (Core)"
[2025-10-20 05:09:09] ID="centos"
[2025-10-20 05:09:09] ID_LIKE="rhel fedora"
[2025-10-20 05:09:09] VERSION_ID="7"
[2025-10-20 05:09:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 05:09:09] ANSI_COLOR="0;31"
[2025-10-20 05:09:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 05:09:09] HOME_URL="https://www.centos.org/"
[2025-10-20 05:09:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 05:09:09] 
[2025-10-20 05:09:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 05:09:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 05:09:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 05:09:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 05:09:09] 
[2025-10-20 05:09:09] 2025-10-20 02:55:42,772 | INFO     | ***************************************
[2025-10-20 05:09:09] 2025-10-20 02:55:43,275 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-10-20 05:09:09] 2025-10-20 02:55:43,297 | INFO     | sufficient remaining disk space (3366812909568 B)
[2025-10-20 05:09:09] 2025-10-20 02:55:43,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 05:09:09] 2025-10-20 02:55:43,298 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 05:09:09] 2025-10-20 02:55:43,298 | INFO     | update_server=False
[2025-10-20 05:09:09] 2025-10-20 02:55:43,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 05:09:09] 2025-10-20 02:55:43,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 05:09:09] 2025-10-20 02:55:43,443 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-20 05:09:09] 2025-10-20 02:55:43,443 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-20 05:09:09] 2025-10-20 02:55:43,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 05:09:09] 2025-10-20 02:55:43,444 | INFO     | will abort loop
[2025-10-20 05:09:09] 2025-10-20 02:55:43,722 | INFO     | all payload control threads have been joined
[2025-10-20 05:09:09] 2025-10-20 02:55:43,818 | INFO     | all data control threads have been joined
[2025-10-20 05:09:09] 2025-10-20 02:55:43,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 05:09:09] 2025-10-20 02:55:44,236 | INFO     | all job control threads have been joined
[2025-10-20 05:09:09] 2025-10-20 02:55:44,299 | INFO     | [job] retrieve thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:44,383 | INFO     | [data] copytool_in thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:44,449 | INFO     | [job] job monitor thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:44,509 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:44,728 | INFO     | [payload] control thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:44,819 | INFO     | [data] control thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:44,884 | INFO     | [job] validate thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:45,051 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:45,241 | INFO     | [job] control thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:45,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 05:09:09] 2025-10-20 02:55:45,328 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:45,497 | INFO     | [payload] validate_post thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:45,875 | INFO     | [data] copytool_out thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:45,890 | INFO     | [payload] failed_post thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:46,332 | INFO     | [job] queue monitor thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:47,305 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:50,059 | INFO     | [monitor] cgroup control has ended
[2025-10-20 05:09:09] 2025-10-20 02:55:54,066 | INFO     | job.realtimelogging is not enabled
[2025-10-20 05:09:09] 2025-10-20 02:55:55,075 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 05:09:09] 2025-10-20 02:55:55,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22549749671744)>', '<ExcThread(monitor, started 22549431805696)>']
[2025-10-20 05:09:09] 2025-10-20 02:56:00,948 | INFO     | all workflow threads have been joined
[2025-10-20 05:09:09] 2025-10-20 02:56:00,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 05:09:09] 2025-10-20 02:56:00,949 | INFO     | traces error code: 0
[2025-10-20 05:09:09] 2025-10-20 02:56:00,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 05:09:09] 2025-10-20 02:56:13,518 | INFO     | PID=263295 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-20 05:09:09] 2025-10-20 02:56:13,518 | INFO     | .. there are 7 such processes running
[2025-10-20 05:09:09] 2025-10-20 02:56:13,519 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 05:09:09] 2025-10-20 02:56:13,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 05:09:09] 2025-10-20 02:56:13,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 05:09:09] 2025-10-20 02:56:13,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 05:09:09] 2025-10-20 02:56:13,519 | INFO     | [monitor] control thread has ended
[2025-10-20 05:09:09] 2025-10-20 02:56:13,663 [wrapper] ==== pilot stdout END ====
[2025-10-20 05:09:09] 2025-10-20 02:56:13,667 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 05:09:09] 2025-10-20 02:56:13,671 [wrapper] pilotpid: 263295
[2025-10-20 05:09:09] 2025-10-20 02:56:13,675 [wrapper] Pilot exit status: 0
[2025-10-20 05:09:09] 2025-10-20 02:56:13,690 [wrapper] pandaids: 6850362584
[2025-10-20 05:09:09] 2025-10-20 02:56:13,855 [wrapper] cleanup supervisor_pilot  458934 263296
[2025-10-20 05:09:09] 2025-10-20 02:56:13,860 [wrapper] Test setup, not cleaning
[2025-10-20 05:09:09] 2025-10-20 02:56:13,864 [wrapper] apfmon messages muted
[2025-10-20 05:09:09] 2025-10-20 02:56:13,868 [wrapper] ==== wrapper stdout END ====
[2025-10-20 05:09:09] 2025-10-20 02:56:13,871 [wrapper] ==== wrapper stderr END ====
[2025-10-20 05:09:09]  *** Error codes and diagnostics ***
[2025-10-20 05:09:09]     "exeErrorCode": 0,
[2025-10-20 05:09:09]     "exeErrorDiag": "",
[2025-10-20 05:09:09]     "pilotErrorCode": 0,
[2025-10-20 05:09:09]     "pilotErrorDiag": "",
[2025-10-20 05:09:09]  *** Listing of results directory ***
[2025-10-20 05:09:09] total 334316
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc    557409 Oct 18 18:22 pilot3.tar.gz
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc      5112 Oct 18 18:27 queuedata.json
[2025-10-20 05:09:09] -rwx------ 1 boinc boinc     36292 Oct 18 18:28 runpilot2-wrapper.sh
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc       100 Oct 20 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 05:09:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 20 03:14 run_atlas
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc       105 Oct 20 03:14 job.xml
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc      6688 Oct 20 03:14 init_data.xml
[2025-10-20 05:09:09] -rw-r--r-- 2 boinc boinc 188469998 Oct 20 03:14 EVNT.46809186._000092.pool.root.1
[2025-10-20 05:09:09] -rw-r--r-- 2 boinc boinc     15120 Oct 20 03:14 start_atlas.sh
[2025-10-20 05:09:09] drwxrwx--x 2 boinc boinc      4096 Oct 20 03:14 shared
[2025-10-20 05:09:09] -rw-r--r-- 2 boinc boinc    569665 Oct 20 03:14 input.tar.gz
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc         0 Oct 20 03:14 boinc_lockfile
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc      2488 Oct 20 03:14 pandaJob.out
[2025-10-20 05:09:09] -rw------- 1 boinc boinc    976750 Oct 20 03:14 agis_schedconf.cvmfs.json
[2025-10-20 05:09:09] -rw------- 1 boinc boinc   1560740 Oct 20 03:14 agis_ddmendpoints.agis.ALL.json
[2025-10-20 05:09:09] drwx------ 5 boinc boinc      4096 Oct 20 03:14 pilot3
[2025-10-20 05:09:09] -rw------- 1 boinc boinc 147682366 Oct 20 04:55 HITS.46809188._002360.pool.root.1
[2025-10-20 05:09:09] -rw------- 1 boinc boinc      1024 Oct 20 04:55 memory_monitor_summary.json
[2025-10-20 05:09:09] -rw------- 1 boinc boinc    273758 Oct 20 04:55 log.46809188._002360.job.log.tgz.1
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc       527 Oct 20 04:55 boinc_task_state.xml
[2025-10-20 05:09:09] -rw------- 1 boinc boinc        95 Oct 20 04:55 pilot_heartbeat.json
[2025-10-20 05:09:09] -rw------- 1 boinc boinc      7777 Oct 20 04:55 heartbeat.json
[2025-10-20 05:09:09] -rw------- 1 boinc boinc       821 Oct 20 04:56 pilotlog.txt
[2025-10-20 05:09:09] -rw------- 1 boinc boinc    869316 Oct 20 04:56 log.46809188._002360.job.log.1
[2025-10-20 05:09:09] -rw------- 1 boinc boinc       357 Oct 20 04:56 output.list
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc       620 Oct 20 04:56 runtime_log
[2025-10-20 05:09:09] -rw------- 1 boinc boinc   1157120 Oct 20 04:56 result.tar.gz
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc      9084 Oct 20 04:56 runtime_log.err
[2025-10-20 05:09:09] -rw------- 1 boinc boinc       662 Oct 20 04:56 i1jLDmzxOU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgXcMDmzXdnDo.diag
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc        25 Oct 20 05:09 wrapper_checkpoint.txt
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc      8192 Oct 20 05:09 boinc_mmap_file
[2025-10-20 05:09:09] -rw-r--r-- 1 boinc boinc     22364 Oct 20 05:09 stderr.txt
[2025-10-20 05:09:09] HITS file was successfully produced:
[2025-10-20 05:09:09] -rw------- 1 boinc boinc 147682366 Oct 20 04:55 shared/HITS.pool.root.1
[2025-10-20 05:09:09]  *** Contents of shared directory: ***
[2025-10-20 05:09:09] total 329996
[2025-10-20 05:09:09] -rw-r--r-- 2 boinc boinc 188469998 Oct 20 03:14 ATLAS.root_0
[2025-10-20 05:09:09] -rw-r--r-- 2 boinc boinc     15120 Oct 20 03:14 start_atlas.sh
[2025-10-20 05:09:09] -rw-r--r-- 2 boinc boinc    569665 Oct 20 03:14 input.tar.gz
[2025-10-20 05:09:09] -rw------- 1 boinc boinc 147682366 Oct 20 04:55 HITS.pool.root.1
[2025-10-20 05:09:09] -rw------- 1 boinc boinc   1157120 Oct 20 04:56 result.tar.gz
05:09:10 (252028): run_atlas exited; CPU time 23245.926050
05:09:10 (252028): called boinc_finish(0)

</stderr_txt>
]]>

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