Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:55:32 (1445470): wrapper (7.7.26015): starting
07:55:32 (1445470): wrapper: running run_atlas (--nthreads 3)
[2025-10-19 07:55:32] Arguments: --nthreads 3
[2025-10-19 07:55:32] Threads: 3
[2025-10-19 07:55:32] Checking for CVMFS
[2025-10-19 07:55:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 07:55:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 07:55:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 07:55:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 07:55:33] 2.9.2.0 114696 4518 84744 151876 0 57 31195547 36864001 0 130560 0 3452349 99.990 159655 2099 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 07:55:33] CVMFS is ok
[2025-10-19 07:55:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 07:55:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 07:55:33] Further information can be found at the LHC@home message board.
[2025-10-19 07:55:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 07:55:33] Checking for apptainer binary...
[2025-10-19 07:55:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 07:55:33] Running /usr/bin/apptainer --version
[2025-10-19 07:55:33] apptainer version 1.4.1-1.1
[2025-10-19 07:55:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 07:55:33] magicA246a
[2025-10-19 07:55:33] apptainer works
[2025-10-19 07:55:33] Set ATHENA_PROC_NUMBER=3
[2025-10-19 07:55:33] Set ATHENA_CORE_NUMBER=3
[2025-10-19 07:55:33] Starting ATLAS job with PandaID=6848040169
[2025-10-19 07:55:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 09:27:52]  *** The last 200 lines of the pilot log: ***
[2025-10-19 09:27:52] 2025-10-19 07:27:18,649 | INFO     | job 6848040169 has completed (purged errors)
[2025-10-19 09:27:52] 2025-10-19 07:27:18,649 | INFO     | overall cleanup function is called
[2025-10-19 09:27:52] 2025-10-19 07:27:19,656 | INFO     | --- collectZombieJob: --- 10, [1455628]
[2025-10-19 09:27:52] 2025-10-19 07:27:19,656 | INFO     | zombie collector waiting for pid 1455628
[2025-10-19 09:27:52] 2025-10-19 07:27:19,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 09:27:52] 2025-10-19 07:27:19,656 | INFO     | collected zombie processes
[2025-10-19 09:27:52] 2025-10-19 07:27:19,656 | INFO     | will attempt to kill all subprocesses of pid=1455628
[2025-10-19 09:27:52] 2025-10-19 07:27:19,699 | INFO     | process IDs to be killed: [1455628] (in reverse order)
[2025-10-19 09:27:52] 2025-10-19 07:27:19,723 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 09:27:52] 2025-10-19 07:27:19,723 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 09:27:52] 2025-10-19 07:27:19,725 | INFO     | did not find any defunct processes belonging to 1455628
[2025-10-19 09:27:52] 2025-10-19 07:27:19,726 | INFO     | did not find any defunct processes belonging to 1455628
[2025-10-19 09:27:52] 2025-10-19 07:27:19,726 | INFO     | ready for new job
[2025-10-19 09:27:52] 2025-10-19 07:27:19,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 09:27:52] 2025-10-19 07:27:19,726 | INFO     | ***************************************
[2025-10-19 09:27:52] 2025-10-19 07:27:19,727 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 09:27:52] 2025-10-19 07:27:19,727 | INFO     | ***************************************
[2025-10-19 09:27:52] 2025-10-19 07:27:19,727 | INFO     | 
[2025-10-19 09:27:52] 2025-10-19 07:27:19,727 | INFO     | architecture information:
[2025-10-19 09:27:52] 2025-10-19 07:27:19,727 | INFO     | executing command: cat /etc/os-release
[2025-10-19 09:27:52] 2025-10-19 07:27:19,735 | INFO     | cat /etc/os-release:
[2025-10-19 09:27:52] NAME="CentOS Linux"
[2025-10-19 09:27:52] VERSION="7 (Core)"
[2025-10-19 09:27:52] ID="centos"
[2025-10-19 09:27:52] ID_LIKE="rhel fedora"
[2025-10-19 09:27:52] VERSION_ID="7"
[2025-10-19 09:27:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 09:27:52] ANSI_COLOR="0;31"
[2025-10-19 09:27:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 09:27:52] HOME_URL="https://www.centos.org/"
[2025-10-19 09:27:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 09:27:52] 
[2025-10-19 09:27:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 09:27:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 09:27:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 09:27:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 09:27:52] 
[2025-10-19 09:27:52] 2025-10-19 07:27:19,735 | INFO     | ***************************************
[2025-10-19 09:27:52] 2025-10-19 07:27:20,238 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 09:27:52] 2025-10-19 07:27:20,249 | INFO     | sufficient remaining disk space (274203672576 B)
[2025-10-19 09:27:52] 2025-10-19 07:27:20,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 09:27:52] 2025-10-19 07:27:20,249 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 09:27:52] 2025-10-19 07:27:20,249 | INFO     | update_server=False
[2025-10-19 09:27:52] 2025-10-19 07:27:20,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 09:27:52] 2025-10-19 07:27:20,249 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 09:27:52] 2025-10-19 07:27:20,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 09:27:52] 2025-10-19 07:27:20,541 | INFO     | all data control threads have been joined
[2025-10-19 09:27:52] 2025-10-19 07:27:20,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 09:27:52] 2025-10-19 07:27:20,839 | INFO     | aborting loop
[2025-10-19 09:27:52] 2025-10-19 07:27:21,146 | INFO     | all job control threads have been joined
[2025-10-19 09:27:52] 2025-10-19 07:27:21,255 | INFO     | [job] queue monitor thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:21,255 | INFO     | [job] retrieve thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:21,294 | INFO     | [payload] failed_post thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:21,546 | INFO     | [data] control thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:21,682 | INFO     | all payload control threads have been joined
[2025-10-19 09:27:52] 2025-10-19 07:27:21,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 09:27:52] 2025-10-19 07:27:21,806 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:21,844 | INFO     | [job] job monitor thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,019 | INFO     | [data] copytool_in thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,151 | INFO     | [job] control thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,340 | INFO     | [payload] validate_post thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,523 | INFO     | [job] validate thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,648 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,654 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:22,688 | INFO     | [payload] control thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:23,691 | INFO     | [data] copytool_out thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:24,518 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:30,544 | INFO     | job.realtimelogging is not enabled
[2025-10-19 09:27:52] 2025-10-19 07:27:31,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 09:27:52] 2025-10-19 07:27:45,175 | INFO     | [monitor] cgroup control has ended
[2025-10-19 09:27:52] 2025-10-19 07:27:46,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140193801811776)>', '<ExcThread(monitor, started 140193034139392)>']
[2025-10-19 09:27:52] 2025-10-19 07:27:51,290 | INFO     | PID=1449192 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 09:27:52] 2025-10-19 07:27:51,290 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 09:27:52] 2025-10-19 07:27:51,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 09:27:52] 2025-10-19 07:27:51,290 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 09:27:52] 2025-10-19 07:27:51,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 09:27:52] 2025-10-19 07:27:51,290 | INFO     | [monitor] control thread has ended
[2025-10-19 09:27:52] 2025-10-19 07:27:51,968 | INFO     | all workflow threads have been joined
[2025-10-19 09:27:52] 2025-10-19 07:27:51,968 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 09:27:52] 2025-10-19 07:27:51,968 | INFO     | traces error code: 0
[2025-10-19 09:27:52] 2025-10-19 07:27:51,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 09:27:52] 2025-10-19 07:27:52,021 [wrapper] ==== pilot stdout END ====
[2025-10-19 09:27:52] 2025-10-19 07:27:52,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 09:27:52] 2025-10-19 07:27:52,025 [wrapper] pilotpid: 1449192
[2025-10-19 09:27:52] 2025-10-19 07:27:52,028 [wrapper] Pilot exit status: 0
[2025-10-19 09:27:52] 2025-10-19 07:27:52,035 [wrapper] pandaids: 6848040169
[2025-10-19 09:27:52] 2025-10-19 07:27:52,051 [wrapper] cleanup supervisor_pilot 1468671 1449193
[2025-10-19 09:27:52] 2025-10-19 07:27:52,054 [wrapper] Test setup, not cleaning
[2025-10-19 09:27:52] 2025-10-19 07:27:52,056 [wrapper] apfmon messages muted
[2025-10-19 09:27:52] 2025-10-19 07:27:52,058 [wrapper] ==== wrapper stdout END ====
[2025-10-19 09:27:52] 2025-10-19 07:27:52,061 [wrapper] ==== wrapper stderr END ====
[2025-10-19 09:27:52]  *** Error codes and diagnostics ***
[2025-10-19 09:27:52]     "exeErrorCode": 0,
[2025-10-19 09:27:52]     "exeErrorDiag": "",
[2025-10-19 09:27:52]     "pilotErrorCode": 0,
[2025-10-19 09:27:52]     "pilotErrorDiag": "",
[2025-10-19 09:27:52]  *** Listing of results directory ***
[2025-10-19 09:27:52] total 435436
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc    557409 Oct 18 18:22 pilot3.tar.gz
[2025-10-19 09:27:52] -rwx------ 1 boinc boinc     36292 Oct 18 18:32 runpilot2-wrapper.sh
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc      5112 Oct 18 18:32 queuedata.json
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc       100 Oct 19 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 09:27:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 07:55 run_atlas
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc       105 Oct 19 07:55 job.xml
[2025-10-19 09:27:52] -rw-r--r-- 2 boinc boinc 227074462 Oct 19 07:55 EVNT.46771634._001902.pool.root.1
[2025-10-19 09:27:52] -rw-r--r-- 2 boinc boinc    569677 Oct 19 07:55 input.tar.gz
[2025-10-19 09:27:52] -rw-r--r-- 2 boinc boinc     15120 Oct 19 07:55 start_atlas.sh
[2025-10-19 09:27:52] drwxrwx--x 2 boinc boinc      4096 Oct 19 07:55 shared
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc         0 Oct 19 07:55 boinc_setup_complete
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc      6447 Oct 19 07:55 init_data.xml
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc         0 Oct 19 07:55 boinc_lockfile
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc      2558 Oct 19 07:55 pandaJob.out
[2025-10-19 09:27:52] -rw------- 1 boinc boinc    976750 Oct 19 07:55 agis_schedconf.cvmfs.json
[2025-10-19 09:27:52] -rw------- 1 boinc boinc   1560740 Oct 19 07:55 agis_ddmendpoints.agis.ALL.json
[2025-10-19 09:27:52] drwx------ 5 boinc boinc      4096 Oct 19 07:55 pilot3
[2025-10-19 09:27:52] -rw------- 1 boinc boinc 212766843 Oct 19 09:26 HITS.46771637._045058.pool.root.1
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc       529 Oct 19 09:26 boinc_task_state.xml
[2025-10-19 09:27:52] -rw------- 1 boinc boinc        95 Oct 19 09:27 pilot_heartbeat.json
[2025-10-19 09:27:52] -rw------- 1 boinc boinc      1016 Oct 19 09:27 memory_monitor_summary.json
[2025-10-19 09:27:52] -rw------- 1 boinc boinc    269439 Oct 19 09:27 log.46771637._045058.job.log.tgz.1
[2025-10-19 09:27:52] -rw------- 1 boinc boinc      7766 Oct 19 09:27 heartbeat.json
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc      8192 Oct 19 09:27 boinc_mmap_file
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc        27 Oct 19 09:27 wrapper_checkpoint.txt
[2025-10-19 09:27:52] -rw------- 1 boinc boinc      4824 Oct 19 09:27 pilotlog.txt
[2025-10-19 09:27:52] -rw------- 1 boinc boinc    802645 Oct 19 09:27 log.46771637._045058.job.log.1
[2025-10-19 09:27:52] -rw------- 1 boinc boinc       357 Oct 19 09:27 output.list
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc       620 Oct 19 09:27 runtime_log
[2025-10-19 09:27:52] -rw------- 1 boinc boinc   1095680 Oct 19 09:27 result.tar.gz
[2025-10-19 09:27:52] -rw------- 1 boinc boinc       663 Oct 19 09:27 d6DNDmu1OU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmAYcMDmFkhTNm.diag
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc      8797 Oct 19 09:27 runtime_log.err
[2025-10-19 09:27:52] -rw-r--r-- 1 boinc boinc     10909 Oct 19 09:27 stderr.txt
[2025-10-19 09:27:52] HITS file was successfully produced:
[2025-10-19 09:27:52] -rw------- 1 boinc boinc 212766843 Oct 19 09:26 shared/HITS.pool.root.1
[2025-10-19 09:27:52]  *** Contents of shared directory: ***
[2025-10-19 09:27:52] total 431196
[2025-10-19 09:27:52] -rw-r--r-- 2 boinc boinc 227074462 Oct 19 07:55 ATLAS.root_0
[2025-10-19 09:27:52] -rw-r--r-- 2 boinc boinc    569677 Oct 19 07:55 input.tar.gz
[2025-10-19 09:27:52] -rw-r--r-- 2 boinc boinc     15120 Oct 19 07:55 start_atlas.sh
[2025-10-19 09:27:52] -rw------- 1 boinc boinc 212766843 Oct 19 09:26 HITS.pool.root.1
[2025-10-19 09:27:52] -rw------- 1 boinc boinc   1095680 Oct 19 09:27 result.tar.gz
09:27:53 (1445470): run_atlas exited; CPU time 15841.299071
09:27:53 (1445470): called boinc_finish(0)

</stderr_txt>
]]>

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