Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:02 (3048792): wrapper (7.7.26015): starting
22:00:02 (3048792): wrapper: running run_atlas (--nthreads 11)
[2025-10-18 22:00:02] Arguments: --nthreads 11
[2025-10-18 22:00:02] Threads: 11
[2025-10-18 22:00:02] Checking for CVMFS
[2025-10-18 22:00:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 22:00:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 22:00:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 22:00:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 22:00:03] 2.13.2.0 141135 126530 219452 151870 0 593 33728910 39288832 8563 16776704 0 112678534 99.565 130405083 34279 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 22:00:03] CVMFS is ok
[2025-10-18 22:00:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 22:00:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 22:00:03] Further information can be found at the LHC@home message board.
[2025-10-18 22:00:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 22:00:03] Checking for apptainer binary...
[2025-10-18 22:00:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 22:00:03] Running /usr/bin/apptainer --version
[2025-10-18 22:00:03] apptainer version 1.4.3-1.el9
[2025-10-18 22:00:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 22:00:03] c-210-4.aglt2.org
[2025-10-18 22:00:03] apptainer works
[2025-10-18 22:00:03] Set ATHENA_PROC_NUMBER=11
[2025-10-18 22:00:03] Set ATHENA_CORE_NUMBER=11
[2025-10-18 22:00:03] Starting ATLAS job with PandaID=6850362590
[2025-10-18 22:00:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 23:12:37]  *** The last 200 lines of the pilot log: ***
[2025-10-18 23:12:37]  workdir=None
[2025-10-18 23:12:37] ]
[2025-10-18 23:12:37] 2025-10-19 03:11:53,361 | INFO     | transferring file log.46809188._002366.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6850362590/log.46809188._002366.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-18 23:12:37] 2025-10-19 03:11:53,361 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6850362590/log.46809188._002366.job.log.tgz.1 /tmp/boinchome/slots/1/log.46809188._002366.job
[2025-10-18 23:12:37] 2025-10-19 03:11:53,380 | INFO     | adding to output.list: log.46809188._002366.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/5d/log.46809188._002366.job.log.tg
[2025-10-18 23:12:37] 2025-10-19 03:11:53,381 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 23:12:37] 2025-10-19 03:11:53,381 | INFO     | summary of transferred files:
[2025-10-18 23:12:37] 2025-10-19 03:11:53,381 | INFO     |  -- lfn=log.46809188._002366.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 23:12:37] 2025-10-19 03:11:53,382 | INFO     | stage-out finished correctly
[2025-10-18 23:12:37] 2025-10-19 03:11:53,434 | INFO     | time since job start (4300s) is within the limit (172800.0s)
[2025-10-18 23:12:37] 2025-10-19 03:11:54,105 | WARNING  | process 3059647 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 23:12:37] 2025-10-19 03:11:54,106 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6850362590/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 23:12:37] 2025-10-19 03:11:54,276 | INFO     | number of running child processes to parent process 3059647: 1
[2025-10-18 23:12:37] 2025-10-19 03:11:54,277 | INFO     | maximum number of monitored processes: 6
[2025-10-18 23:12:37] 2025-10-19 03:11:55,459 | INFO     | time since job start (4302s) is within the limit (172800.0s)
[2025-10-18 23:12:37] 2025-10-19 03:11:56,780 | INFO     | monitor loop #310: job 0:6850362590 is in state 'finished'
[2025-10-18 23:12:37] 2025-10-19 03:11:56,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 23:12:37] 2025-10-19 03:11:56,946 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 23:12:37] 2025-10-19 03:11:57,465 | INFO     | time since job start (4304s) is within the limit (172800.0s)
[2025-10-18 23:12:37] 2025-10-19 03:11:59,283 | INFO     | monitor loop #311: job 0:6850362590 is in state 'finished'
[2025-10-18 23:12:37] 2025-10-19 03:11:59,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 23:12:37] 2025-10-19 03:11:59,471 | INFO     | time since job start (4306s) is within the limit (172800.0s)
[2025-10-18 23:12:37] 2025-10-19 03:11:59,941 | INFO     | job 6850362590 has state=finished
[2025-10-18 23:12:37] 2025-10-19 03:11:59,942 | INFO     | preparing for final server update for job 6850362590 in state='finished'
[2025-10-18 23:12:37] 2025-10-19 03:11:59,942 | INFO     | this job has now completed (state=finished)
[2025-10-18 23:12:37] 2025-10-19 03:11:59,942 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 23:12:37] 2025-10-19 03:11:59,943 | INFO     | log transfer has been attempted: DONE
[2025-10-18 23:12:37] 2025-10-19 03:11:59,943 | INFO     | job 6850362590 has finished - writing final server update
[2025-10-18 23:12:37] 2025-10-19 03:11:59,943 | INFO     | total number of processed events: 400 (read)
[2025-10-18 23:12:37] 2025-10-19 03:11:59,944 | INFO     | executing command: lscpu
[2025-10-18 23:12:37] 2025-10-19 03:11:59,985 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 23:12:37] 2025-10-19 03:12:01,476 | INFO     | time since job start (4308s) is within the limit (172800.0s)
[2025-10-18 23:12:37] 2025-10-19 03:12:01,786 | INFO     | monitor loop #312: job 0:6850362590 is in state 'finished'
[2025-10-18 23:12:37] 2025-10-19 03:12:01,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,482 | INFO     | time since job start (4310s) is within the limit (172800.0s)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,721 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-18 23:12:37] 2025-10-19 03:12:03,727 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.749875
[2025-10-18 23:12:37] 2025-10-19 03:12:03,734 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6850362590/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,735 | INFO     | extracted standard info from prmon json
[2025-10-18 23:12:37] 2025-10-19 03:12:03,735 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 23:12:37] 2025-10-19 03:12:03,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 23:12:37] 2025-10-19 03:12:03,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 23:12:37] 2025-10-19 03:12:03,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 23:12:37] 2025-10-19 03:12:03,737 | INFO     | fitting pss+swap vs Time
[2025-10-18 23:12:37] 2025-10-19 03:12:03,738 | INFO     | sum of square deviations: 81289233.75
[2025-10-18 23:12:37] 2025-10-19 03:12:03,738 | INFO     | sum of deviations: -2141442253.0
[2025-10-18 23:12:37] 2025-10-19 03:12:03,738 | INFO     | mean x: 1760841464.6875
[2025-10-18 23:12:37] 2025-10-19 03:12:03,738 | INFO     | mean y: 2676620.5
[2025-10-18 23:12:37] 2025-10-19 03:12:03,738 | INFO     | -- intersect: 46389389096.01549
[2025-10-18 23:12:37] 2025-10-19 03:12:03,738 | INFO     | intersect: 46389389096.01549
[2025-10-18 23:12:37] 2025-10-19 03:12:03,739 | INFO     | chi2: 0.06562521406791859
[2025-10-18 23:12:37] 2025-10-19 03:12:03,739 | INFO     | -- intersect: 46389389096.01549
[2025-10-18 23:12:37] 2025-10-19 03:12:03,739 | INFO     | current memory leak: -26.34 B/s (using 64 data points, chi2=0.07)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,739 | INFO     | could have reported an average CPU frequency of 2619 MHz (6 samples)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | ..............................
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . Timing measurements:
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . get job = 0 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . initial setup = 2 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . payload setup = 5 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . stage-in = 0 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . payload execution = 4274 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . stage-out = 0 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | . log creation = 0 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,740 | INFO     | ..............................
[2025-10-18 23:12:37] 2025-10-19 03:12:03,869 | INFO     | 
[2025-10-18 23:12:37] 2025-10-19 03:12:03,869 | INFO     | job summary report
[2025-10-18 23:12:37] 2025-10-19 03:12:03,869 | INFO     | --------------------------------------------------
[2025-10-18 23:12:37] 2025-10-19 03:12:03,869 | INFO     | PanDA job id: 6850362590
[2025-10-18 23:12:37] 2025-10-19 03:12:03,869 | INFO     | task id: 46809188
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | errors: (none)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | pilot state: finished 
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | transexitcode: 0
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | exeerrorcode: 0
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | exeerrordiag: 
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | exitcode: 0
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | exitmsg: OK
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | cpuconsumptiontime: 37524 s
[2025-10-18 23:12:37] 2025-10-19 03:12:03,870 | INFO     | nevents: 400
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | neventsw: 0
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | pid: 3059647
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | pgrp: 3059647
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | corecount: 11
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | event service: False
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | sizes: {0: 2348006, 1: 2348862, 5: 2349124, 12: 2349180, 4283: 2375150, 4285: 2384148, 4289: 2384332, 4296: 2384526}
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | --------------------------------------------------
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | 
[2025-10-18 23:12:37] 2025-10-19 03:12:03,871 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-18 23:12:37] 2025-10-19 03:12:03,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,891 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,891 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,891 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | job 6850362590 has completed (purged errors)
[2025-10-18 23:12:37] 2025-10-19 03:12:03,893 | INFO     | overall cleanup function is called
[2025-10-18 23:12:37] 2025-10-19 03:12:04,901 | INFO     | --- collectZombieJob: --- 10, [3059647]
[2025-10-18 23:12:37] 2025-10-19 03:12:04,901 | INFO     | zombie collector waiting for pid 3059647
[2025-10-18 23:12:37] 2025-10-19 03:12:04,901 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 23:12:37] 2025-10-19 03:12:04,901 | INFO     | collected zombie processes
[2025-10-18 23:12:37] 2025-10-19 03:12:04,902 | INFO     | will attempt to kill all subprocesses of pid=3059647
[2025-10-18 23:12:37] 2025-10-19 03:12:05,124 | INFO     | process IDs to be killed: [3059647] (in reverse order)
[2025-10-18 23:12:37] 2025-10-19 03:12:05,196 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 23:12:37] 2025-10-19 03:12:05,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 23:12:37] 2025-10-19 03:12:05,205 | INFO     | did not find any defunct processes belonging to 3059647
[2025-10-18 23:12:37] 2025-10-19 03:12:05,213 | INFO     | did not find any defunct processes belonging to 3059647
[2025-10-18 23:12:37] 2025-10-19 03:12:05,214 | INFO     | ready for new job
[2025-10-18 23:12:37] 2025-10-19 03:12:05,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 23:12:37] 2025-10-19 03:12:05,215 | INFO     | ***************************************
[2025-10-18 23:12:37] 2025-10-19 03:12:05,216 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 23:12:37] 2025-10-19 03:12:05,216 | INFO     | ***************************************
[2025-10-18 23:12:37] 2025-10-19 03:12:05,216 | INFO     | 
[2025-10-18 23:12:37] 2025-10-19 03:12:05,218 | INFO     | architecture information:
[2025-10-18 23:12:37] 2025-10-19 03:12:05,218 | INFO     | executing command: cat /etc/os-release
[2025-10-18 23:12:37] 2025-10-19 03:12:05,232 | INFO     | cat /etc/os-release:
[2025-10-18 23:12:37] NAME="CentOS Linux"
[2025-10-18 23:12:37] VERSION="7 (Core)"
[2025-10-18 23:12:37] ID="centos"
[2025-10-18 23:12:37] ID_LIKE="rhel fedora"
[2025-10-18 23:12:37] VERSION_ID="7"
[2025-10-18 23:12:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 23:12:37] ANSI_COLOR="0;31"
[2025-10-18 23:12:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 23:12:37] HOME_URL="https://www.centos.org/"
[2025-10-18 23:12:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 23:12:37] 
[2025-10-18 23:12:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 23:12:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 23:12:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 23:12:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 23:12:37] 
[2025-10-18 23:12:37] 2025-10-19 03:12:05,233 | INFO     | ***************************************
[2025-10-18 23:12:37] 2025-10-19 03:12:05,736 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-18 23:12:37] 2025-10-19 03:12:05,758 | INFO     | sufficient remaining disk space (53951332352 B)
[2025-10-18 23:12:37] 2025-10-19 03:12:05,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 23:12:37] 2025-10-19 03:12:05,759 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 23:12:37] 2025-10-19 03:12:05,759 | INFO     | update_server=False
[2025-10-18 23:12:37] 2025-10-19 03:12:05,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 23:12:37] 2025-10-19 03:12:05,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 23:12:37] 2025-10-19 03:12:05,760 | INFO     | aborting loop
[2025-10-18 23:12:37] 2025-10-19 03:12:05,760 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 23:12:37] 2025-10-19 03:12:06,389 | INFO     | all data control threads have been joined
[2025-10-18 23:12:37] 2025-10-19 03:12:06,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 23:12:37] 2025-10-19 03:12:06,535 | INFO     | all payload control threads have been joined
[2025-10-18 23:12:37] 2025-10-19 03:12:06,764 | INFO     | [job] retrieve thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:06,765 | INFO     | [job] queue monitor thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:06,765 | INFO     | [job] job monitor thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:06,864 | INFO     | [payload] failed_post thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:06,919 | INFO     | [data] copytool_in thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:06,929 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,084 | INFO     | [job] validate thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,099 | INFO     | [payload] validate_post thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,109 | INFO     | all job control threads have been joined
[2025-10-18 23:12:37] 2025-10-19 03:12:07,372 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,395 | INFO     | [data] control thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,458 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,540 | INFO     | [payload] control thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:07,561 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 23:12:37] 2025-10-19 03:12:08,114 | INFO     | [job] control thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:08,509 | INFO     | [data] copytool_out thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:11,567 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:16,635 | INFO     | job.realtimelogging is not enabled
[2025-10-18 23:12:37] 2025-10-19 03:12:17,640 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 23:12:37] 2025-10-19 03:12:20,384 | INFO     | [monitor] cgroup control has ended
[2025-10-18 23:12:37] 2025-10-19 03:12:22,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280271390528)>', '<ExcThread(monitor, started 140279269029632)>']
[2025-10-18 23:12:37] 2025-10-19 03:12:27,480 | INFO     | all workflow threads have been joined
[2025-10-18 23:12:37] 2025-10-19 03:12:27,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 23:12:37] 2025-10-19 03:12:27,481 | INFO     | traces error code: 0
[2025-10-18 23:12:37] 2025-10-19 03:12:27,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 23:12:37] 2025-10-19 03:12:36,804 | INFO     | PID=3053140 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 23:12:37] 2025-10-19 03:12:36,805 | INFO     | .. there are 10 such processes running
[2025-10-18 23:12:37] 2025-10-19 03:12:36,805 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 23:12:37] 2025-10-19 03:12:36,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 23:12:37] 2025-10-19 03:12:36,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 23:12:37] 2025-10-19 03:12:36,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 23:12:37] 2025-10-19 03:12:36,806 | INFO     | [monitor] control thread has ended
[2025-10-18 23:12:37] 2025-10-19 03:12:36,966 [wrapper] ==== pilot stdout END ====
[2025-10-18 23:12:37] 2025-10-19 03:12:36,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 23:12:37] 2025-10-19 03:12:36,975 [wrapper] pilotpid: 3053140
[2025-10-18 23:12:37] 2025-10-19 03:12:36,978 [wrapper] Pilot exit status: 0
[2025-10-18 23:12:37] 2025-10-19 03:12:36,991 [wrapper] pandaids: 6850362590
[2025-10-18 23:12:37] 2025-10-19 03:12:37,039 [wrapper] cleanup supervisor_pilot 3126714 3053141
[2025-10-18 23:12:37] 2025-10-19 03:12:37,043 [wrapper] Test setup, not cleaning
[2025-10-18 23:12:37] 2025-10-19 03:12:37,047 [wrapper] apfmon messages muted
[2025-10-18 23:12:37] 2025-10-19 03:12:37,051 [wrapper] ==== wrapper stdout END ====
[2025-10-18 23:12:37] 2025-10-19 03:12:37,054 [wrapper] ==== wrapper stderr END ====
[2025-10-18 23:12:37]  *** Error codes and diagnostics ***
[2025-10-18 23:12:37]     "exeErrorCode": 0,
[2025-10-18 23:12:37]     "exeErrorDiag": "",
[2025-10-18 23:12:37]     "pilotErrorCode": 0,
[2025-10-18 23:12:37]     "pilotErrorDiag": "",
[2025-10-18 23:12:37]  *** Listing of results directory ***
[2025-10-18 23:12:37] total 335156
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas    557409 Oct 18 12:22 pilot3.tar.gz
[2025-10-18 23:12:37] -rwx------. 1 boincer umatlas     36292 Oct 18 12:27 runpilot2-wrapper.sh
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas      5112 Oct 18 12:27 queuedata.json
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas       100 Oct 18 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 23:12:37] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 18 22:00 run_atlas
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas       105 Oct 18 22:00 job.xml
[2025-10-18 23:12:37] -rw-r--r--. 2 boincer umatlas 188469998 Oct 18 22:00 EVNT.46809186._000092.pool.root.1
[2025-10-18 23:12:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 22:00 start_atlas.sh
[2025-10-18 23:12:37] drwxrwx--x. 2 boincer umatlas      4096 Oct 18 22:00 shared
[2025-10-18 23:12:37] -rw-r--r--. 2 boincer umatlas    569665 Oct 18 22:00 input.tar.gz
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas         0 Oct 18 22:00 boinc_lockfile
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas      2489 Oct 18 22:00 pandaJob.out
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas    976750 Oct 18 22:00 agis_schedconf.cvmfs.json
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas   1560740 Oct 18 22:00 agis_ddmendpoints.agis.ALL.json
[2025-10-18 23:12:37] drwx------. 5 boincer umatlas      4096 Oct 18 22:00 pilot3
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas      6659 Oct 18 23:04 init_data.xml
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas 148841831 Oct 18 23:11 HITS.46809188._002366.pool.root.1
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas       529 Oct 18 23:11 boinc_task_state.xml
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas      1033 Oct 18 23:11 memory_monitor_summary.json
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas    362277 Oct 18 23:11 log.46809188._002366.job.log.tgz.1
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas      7807 Oct 18 23:12 heartbeat.json
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas        27 Oct 18 23:12 wrapper_checkpoint.txt
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas        95 Oct 18 23:12 pilot_heartbeat.json
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas       823 Oct 18 23:12 pilotlog.txt
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas    629953 Oct 18 23:12 log.46809188._002366.job.log.1
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas      8192 Oct 18 23:12 boinc_mmap_file
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas       357 Oct 18 23:12 output.list
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas       620 Oct 18 23:12 runtime_log
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas   1013760 Oct 18 23:12 result.tar.gz
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas      8700 Oct 18 23:12 runtime_log.err
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas       652 Oct 18 23:12 8SDLDmrxOU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmynxNDm9CjOUm.diag
[2025-10-18 23:12:37] -rw-r--r--. 1 boincer umatlas     22275 Oct 18 23:12 stderr.txt
[2025-10-18 23:12:37] HITS file was successfully produced:
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas 148841831 Oct 18 23:11 shared/HITS.pool.root.1
[2025-10-18 23:12:37]  *** Contents of shared directory: ***
[2025-10-18 23:12:37] total 330984
[2025-10-18 23:12:37] -rw-r--r--. 2 boincer umatlas 188469998 Oct 18 22:00 ATLAS.root_0
[2025-10-18 23:12:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 22:00 start_atlas.sh
[2025-10-18 23:12:37] -rw-r--r--. 2 boincer umatlas    569665 Oct 18 22:00 input.tar.gz
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas 148841831 Oct 18 23:11 HITS.pool.root.1
[2025-10-18 23:12:37] -rw-------. 1 boincer umatlas   1013760 Oct 18 23:12 result.tar.gz
23:12:39 (3048792): run_atlas exited; CPU time 37591.314935
23:12:39 (3048792): called boinc_finish(0)

</stderr_txt>
]]>

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