Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:27:02 (2412113): wrapper (7.7.26015): starting
09:27:02 (2412113): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 09:27:02] Arguments: --nthreads 4
[2025-10-19 09:27:02] Threads: 4
[2025-10-19 09:27:02] Checking for CVMFS
[2025-10-19 09:27:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 09:27:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 09:27:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 09:27:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 09:27:02] 2.9.2.0 279843 4495 94160 151879 0 56 35452016 36864000 0 130560 0 3793893 99.988 187845 1814 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 09:27:02] CVMFS is ok
[2025-10-19 09:27:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 09:27:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 09:27:02] Further information can be found at the LHC@home message board.
[2025-10-19 09:27:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 09:27:02] Checking for apptainer binary...
[2025-10-19 09:27:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 09:27:02] Running /usr/bin/apptainer --version
[2025-10-19 09:27:02] apptainer version 1.4.1-1.1
[2025-10-19 09:27:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 09:27:02] atlasA237
[2025-10-19 09:27:02] apptainer works
[2025-10-19 09:27:02] Set ATHENA_PROC_NUMBER=4
[2025-10-19 09:27:02] Set ATHENA_CORE_NUMBER=4
[2025-10-19 09:27:02] Starting ATLAS job with PandaID=6848039858
[2025-10-19 09:27:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 10:43:33]  *** The last 200 lines of the pilot log: ***
[2025-10-19 10:43:33] 2025-10-19 08:43:01,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,031 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 10:43:33] 2025-10-19 08:43:01,031 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,031 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 10:43:33] 2025-10-19 08:43:01,031 | INFO     | job 6848039858 has completed (purged errors)
[2025-10-19 10:43:33] 2025-10-19 08:43:01,031 | INFO     | overall cleanup function is called
[2025-10-19 10:43:33] 2025-10-19 08:43:02,032 | INFO     | --- collectZombieJob: --- 10, [2422567]
[2025-10-19 10:43:33] 2025-10-19 08:43:02,033 | INFO     | zombie collector waiting for pid 2422567
[2025-10-19 10:43:33] 2025-10-19 08:43:02,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 10:43:33] 2025-10-19 08:43:02,033 | INFO     | collected zombie processes
[2025-10-19 10:43:33] 2025-10-19 08:43:02,033 | INFO     | will attempt to kill all subprocesses of pid=2422567
[2025-10-19 10:43:33] 2025-10-19 08:43:02,108 | INFO     | process IDs to be killed: [2422567] (in reverse order)
[2025-10-19 10:43:33] 2025-10-19 08:43:02,149 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 10:43:33] 2025-10-19 08:43:02,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 10:43:33] 2025-10-19 08:43:02,152 | INFO     | did not find any defunct processes belonging to 2422567
[2025-10-19 10:43:33] 2025-10-19 08:43:02,155 | INFO     | did not find any defunct processes belonging to 2422567
[2025-10-19 10:43:33] 2025-10-19 08:43:02,155 | INFO     | ready for new job
[2025-10-19 10:43:33] 2025-10-19 08:43:02,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 10:43:33] 2025-10-19 08:43:02,156 | INFO     | ***************************************
[2025-10-19 10:43:33] 2025-10-19 08:43:02,156 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 10:43:33] 2025-10-19 08:43:02,156 | INFO     | ***************************************
[2025-10-19 10:43:33] 2025-10-19 08:43:02,156 | INFO     | 
[2025-10-19 10:43:33] 2025-10-19 08:43:02,157 | INFO     | architecture information:
[2025-10-19 10:43:33] 2025-10-19 08:43:02,157 | INFO     | executing command: cat /etc/os-release
[2025-10-19 10:43:33] 2025-10-19 08:43:02,170 | INFO     | cat /etc/os-release:
[2025-10-19 10:43:33] NAME="CentOS Linux"
[2025-10-19 10:43:33] VERSION="7 (Core)"
[2025-10-19 10:43:33] ID="centos"
[2025-10-19 10:43:33] ID_LIKE="rhel fedora"
[2025-10-19 10:43:33] VERSION_ID="7"
[2025-10-19 10:43:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 10:43:33] ANSI_COLOR="0;31"
[2025-10-19 10:43:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 10:43:33] HOME_URL="https://www.centos.org/"
[2025-10-19 10:43:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 10:43:33] 
[2025-10-19 10:43:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 10:43:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 10:43:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 10:43:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 10:43:33] 
[2025-10-19 10:43:33] 2025-10-19 08:43:02,170 | INFO     | ***************************************
[2025-10-19 10:43:33] 2025-10-19 08:43:02,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | INFO     | sufficient remaining disk space (325333286912 B)
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | INFO     | update_server=False
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | INFO     | aborting loop
[2025-10-19 10:43:33] 2025-10-19 08:43:02,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 10:43:33] 2025-10-19 08:43:03,221 | INFO     | all job control threads have been joined
[2025-10-19 10:43:33] 2025-10-19 08:43:03,617 | INFO     | all data control threads have been joined
[2025-10-19 10:43:33] 2025-10-19 08:43:03,694 | INFO     | [job] job monitor thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:03,694 | INFO     | [job] retrieve thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:03,694 | INFO     | [job] queue monitor thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:03,769 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:03,801 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:03,804 | INFO     | [data] copytool_in thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:03,841 | INFO     | all payload control threads have been joined
[2025-10-19 10:43:33] 2025-10-19 08:43:03,961 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 10:43:33] 2025-10-19 08:43:04,227 | INFO     | [job] control thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:04,412 | INFO     | [payload] failed_post thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:04,619 | INFO     | [data] control thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:04,847 | INFO     | [payload] control thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:04,980 | INFO     | [payload] validate_post thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:05,069 | INFO     | [job] validate thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:05,183 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:05,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 10:43:33] 2025-10-19 08:43:05,967 | INFO     | [data] copytool_out thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:09,769 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:13,445 | INFO     | job.realtimelogging is not enabled
[2025-10-19 10:43:33] 2025-10-19 08:43:14,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 10:43:33] 2025-10-19 08:43:15,679 | INFO     | [monitor] cgroup control has ended
[2025-10-19 10:43:33] 2025-10-19 08:43:16,900 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140296721078080)>', '<ExcThread(monitor, started 140296214001408)>']
[2025-10-19 10:43:33] 2025-10-19 08:43:21,906 | INFO     | all workflow threads have been joined
[2025-10-19 10:43:33] 2025-10-19 08:43:21,906 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 10:43:33] 2025-10-19 08:43:21,906 | INFO     | traces error code: 0
[2025-10-19 10:43:33] 2025-10-19 08:43:21,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 10:43:33] 2025-10-19 08:43:32,899 | INFO     | PID=2415925 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 10:43:33] 2025-10-19 08:43:32,899 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 10:43:33] 2025-10-19 08:43:32,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 10:43:33] 2025-10-19 08:43:32,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 10:43:33] 2025-10-19 08:43:32,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 10:43:33] 2025-10-19 08:43:32,899 | INFO     | [monitor] control thread has ended
[2025-10-19 10:43:33] 2025-10-19 08:43:32,967 [wrapper] ==== pilot stdout END ====
[2025-10-19 10:43:33] 2025-10-19 08:43:32,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 10:43:33] 2025-10-19 08:43:32,974 [wrapper] pilotpid: 2415925
[2025-10-19 10:43:33] 2025-10-19 08:43:32,977 [wrapper] Pilot exit status: 0
[2025-10-19 10:43:33] 2025-10-19 08:43:32,987 [wrapper] pandaids: 6848039858
[2025-10-19 10:43:33] 2025-10-19 08:43:33,013 [wrapper] cleanup supervisor_pilot 2446982 2415926
[2025-10-19 10:43:33] 2025-10-19 08:43:33,017 [wrapper] Test setup, not cleaning
[2025-10-19 10:43:33] 2025-10-19 08:43:33,020 [wrapper] apfmon messages muted
[2025-10-19 10:43:33] 2025-10-19 08:43:33,024 [wrapper] ==== wrapper stdout END ====
[2025-10-19 10:43:33] 2025-10-19 08:43:33,027 [wrapper] ==== wrapper stderr END ====
[2025-10-19 10:43:33]  *** Error codes and diagnostics ***
[2025-10-19 10:43:33]     "exeErrorCode": 0,
[2025-10-19 10:43:33]     "exeErrorDiag": "",
[2025-10-19 10:43:33]     "pilotErrorCode": 0,
[2025-10-19 10:43:33]     "pilotErrorDiag": "",
[2025-10-19 10:43:33]  *** Listing of results directory ***
[2025-10-19 10:43:33] total 425816
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc    557409 Oct 18 17:40 pilot3.tar.gz
[2025-10-19 10:43:33] -rwx------ 1 boinc boinc     36292 Oct 18 18:12 runpilot2-wrapper.sh
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc      5112 Oct 18 18:12 queuedata.json
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc       100 Oct 19 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 10:43:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 09:27 run_atlas
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc       105 Oct 19 09:27 job.xml
[2025-10-19 10:43:33] -rw-r--r-- 2 boinc boinc 227219335 Oct 19 09:27 EVNT.46771634._001891.pool.root.1
[2025-10-19 10:43:33] -rw-r--r-- 2 boinc boinc    569671 Oct 19 09:27 input.tar.gz
[2025-10-19 10:43:33] -rw-r--r-- 2 boinc boinc     15120 Oct 19 09:27 start_atlas.sh
[2025-10-19 10:43:33] drwxrwx--x 2 boinc boinc      4096 Oct 19 09:27 shared
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc         0 Oct 19 09:27 boinc_setup_complete
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc      6370 Oct 19 09:27 init_data.xml
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc         0 Oct 19 09:27 boinc_lockfile
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc      2558 Oct 19 09:27 pandaJob.out
[2025-10-19 10:43:33] -rw------- 1 boinc boinc    976750 Oct 19 09:27 agis_schedconf.cvmfs.json
[2025-10-19 10:43:33] -rw------- 1 boinc boinc   1560740 Oct 19 09:27 agis_ddmendpoints.agis.ALL.json
[2025-10-19 10:43:33] drwx------ 5 boinc boinc      4096 Oct 19 09:27 pilot3
[2025-10-19 10:43:33] -rw------- 1 boinc boinc 203054396 Oct 19 10:42 HITS.46771637._044779.pool.root.1
[2025-10-19 10:43:33] -rw------- 1 boinc boinc        95 Oct 19 10:42 pilot_heartbeat.json
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc       529 Oct 19 10:42 boinc_task_state.xml
[2025-10-19 10:43:33] -rw------- 1 boinc boinc      1022 Oct 19 10:42 memory_monitor_summary.json
[2025-10-19 10:43:33] -rw------- 1 boinc boinc    266245 Oct 19 10:42 log.46771637._044779.job.log.tgz.1
[2025-10-19 10:43:33] -rw------- 1 boinc boinc      7772 Oct 19 10:43 heartbeat.json
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc      8192 Oct 19 10:43 boinc_mmap_file
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc        27 Oct 19 10:43 wrapper_checkpoint.txt
[2025-10-19 10:43:33] -rw------- 1 boinc boinc       747 Oct 19 10:43 pilotlog.txt
[2025-10-19 10:43:33] -rw------- 1 boinc boinc    670886 Oct 19 10:43 log.46771637._044779.job.log.1
[2025-10-19 10:43:33] -rw------- 1 boinc boinc       357 Oct 19 10:43 output.list
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc       620 Oct 19 10:43 runtime_log
[2025-10-19 10:43:33] -rw------- 1 boinc boinc    952320 Oct 19 10:43 result.tar.gz
[2025-10-19 10:43:33] -rw------- 1 boinc boinc       661 Oct 19 10:43 lgMNDmhiOU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKkxNDmE97mmm.diag
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc      8792 Oct 19 10:43 runtime_log.err
[2025-10-19 10:43:33] -rw-r--r-- 1 boinc boinc     11716 Oct 19 10:43 stderr.txt
[2025-10-19 10:43:33] HITS file was successfully produced:
[2025-10-19 10:43:33] -rw------- 1 boinc boinc 203054396 Oct 19 10:42 shared/HITS.pool.root.1
[2025-10-19 10:43:33]  *** Contents of shared directory: ***
[2025-10-19 10:43:33] total 421708
[2025-10-19 10:43:33] -rw-r--r-- 2 boinc boinc 227219335 Oct 19 09:27 ATLAS.root_0
[2025-10-19 10:43:33] -rw-r--r-- 2 boinc boinc    569671 Oct 19 09:27 input.tar.gz
[2025-10-19 10:43:33] -rw-r--r-- 2 boinc boinc     15120 Oct 19 09:27 start_atlas.sh
[2025-10-19 10:43:33] -rw------- 1 boinc boinc 203054396 Oct 19 10:42 HITS.pool.root.1
[2025-10-19 10:43:33] -rw------- 1 boinc boinc    952320 Oct 19 10:43 result.tar.gz
10:43:34 (2412113): run_atlas exited; CPU time 17225.374857
10:43:34 (2412113): called boinc_finish(0)

</stderr_txt>
]]>

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