Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:08:24 (1864438): wrapper (7.7.26015): starting
07:08:24 (1864438): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 07:08:24] Arguments: --nthreads 4
[2025-10-19 07:08:24] Threads: 4
[2025-10-19 07:08:24] Checking for CVMFS
[2025-10-19 07:08:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 07:08:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 07:08:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 07:08:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 07:08:24] 2.9.2.0 85452 4492 99556 151875 3 57 23408006 36864000 0 130560 0 4672461 99.993 159919 2043 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-19 07:08:24] CVMFS is ok
[2025-10-19 07:08:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 07:08:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 07:08:24] Further information can be found at the LHC@home message board.
[2025-10-19 07:08:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 07:08:24] Checking for apptainer binary...
[2025-10-19 07:08:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 07:08:24] Running /usr/bin/apptainer --version
[2025-10-19 07:08:24] apptainer version 1.4.1-1.1
[2025-10-19 07:08:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 07:08:24] thA373a
[2025-10-19 07:08:24] apptainer works
[2025-10-19 07:08:24] Set ATHENA_PROC_NUMBER=4
[2025-10-19 07:08:24] Set ATHENA_CORE_NUMBER=4
[2025-10-19 07:08:24] Starting ATLAS job with PandaID=6848030209
[2025-10-19 07:08:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 07:12:37]  *** The last 200 lines of the pilot log: ***
[2025-10-19 07:12:37] 2025-10-19 05:11:44,218 | INFO     | [job] job monitor thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:44,473 | INFO     | [data] copytool_in thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:44,583 | INFO     | all payload control threads have been joined
[2025-10-19 07:12:37] 2025-10-19 05:11:44,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 07:12:37] 2025-10-19 05:11:44,769 | INFO     | all job control threads have been joined
[2025-10-19 07:12:37] 2025-10-19 05:11:44,864 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:44,920 | INFO     | [data] control thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:44,941 | INFO     | [payload] validate_post thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,076 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,479 | INFO     | [payload] failed_post thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,521 | INFO     | [job] validate thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,589 | INFO     | [payload] control thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,637 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,712 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,774 | INFO     | [job] control thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:45,962 | INFO     | [data] copytool_out thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:11:48,713 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 07:12:37] 2025-10-19 05:12:12,699 | INFO     | PID=1868226 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 07:12:37] 2025-10-19 05:12:12,699 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 07:12:37] 2025-10-19 05:12:12,699 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 07:12:37] 2025-10-19 05:12:12,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 07:12:37] 2025-10-19 05:12:31,743 | INFO     | [monitor] cgroup control has ended
[2025-10-19 07:12:37] 2025-10-19 05:12:32,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140685016717120)>', '<ExcThread(monitor, started 140684363278080)>']
[2025-10-19 07:12:37] 2025-10-19 05:12:32,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 07:12:37] 2025-10-19 05:12:32,806 | INFO     | [monitor] control thread has ended
[2025-10-19 07:12:37] 2025-10-19 05:12:37,774 | INFO     | all workflow threads have been joined
[2025-10-19 07:12:37] 2025-10-19 05:12:37,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 07:12:37] 2025-10-19 05:12:37,775 | INFO     | traces error code: 0
[2025-10-19 07:12:37] 2025-10-19 05:12:37,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 07:12:37] 2025-10-19 05:12:37,853 [wrapper] ==== pilot stdout END ====
[2025-10-19 07:12:37] 2025-10-19 05:12:37,857 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 07:12:37] 2025-10-19 05:12:37,862 [wrapper] pilotpid: 1868226
[2025-10-19 07:12:37] 2025-10-19 05:12:37,866 [wrapper] Pilot exit status: 0
[2025-10-19 07:12:37] 2025-10-19 05:12:37,877 [wrapper] pandaids: 6848030209
[2025-10-19 07:12:37] 2025-10-19 05:12:37,899 [wrapper] cleanup supervisor_pilot 1868232 1868227
[2025-10-19 07:12:37] 2025-10-19 05:12:37,903 [wrapper] Test setup, not cleaning
[2025-10-19 07:12:37] 2025-10-19 05:12:37,907 [wrapper] apfmon messages muted
[2025-10-19 07:12:37] 2025-10-19 05:12:37,911 [wrapper] ==== wrapper stdout END ====
[2025-10-19 07:12:37] 2025-10-19 05:12:37,914 [wrapper] ==== wrapper stderr END ====
[2025-10-19 07:12:37]  *** Error codes and diagnostics ***
[2025-10-19 07:12:37]     "exeErrorCode": 65,
[2025-10-19 07:12:37]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-10-19 07:12:37]     "pilotErrorCode": 1305,
[2025-10-19 07:12:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-10-19 07:12:37]  *** Listing of results directory ***
[2025-10-19 07:12:37] total 227624
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc    557409 Oct 18 11:40 pilot3.tar.gz
[2025-10-19 07:12:37] -rwx------ 1 boinc boinc     36292 Oct 18 11:45 runpilot2-wrapper.sh
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc      5112 Oct 18 11:45 queuedata.json
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc       100 Oct 19 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 07:12:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 07:08 run_atlas
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc       105 Oct 19 07:08 job.xml
[2025-10-19 07:12:37] -rw-r--r-- 2 boinc boinc 228967208 Oct 19 07:08 EVNT.46771634._000780.pool.root.1
[2025-10-19 07:12:37] -rw-r--r-- 2 boinc boinc    569668 Oct 19 07:08 input.tar.gz
[2025-10-19 07:12:37] -rw-r--r-- 2 boinc boinc     15120 Oct 19 07:08 start_atlas.sh
[2025-10-19 07:12:37] drwxrwx--x 2 boinc boinc      4096 Oct 19 07:08 shared
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc         0 Oct 19 07:08 boinc_setup_complete
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc      6376 Oct 19 07:08 init_data.xml
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc         0 Oct 19 07:08 boinc_lockfile
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc      2557 Oct 19 07:08 pandaJob.out
[2025-10-19 07:12:37] -rw------- 1 boinc boinc    976750 Oct 19 07:08 agis_schedconf.cvmfs.json
[2025-10-19 07:12:37] -rw------- 1 boinc boinc   1560740 Oct 19 07:08 agis_ddmendpoints.agis.ALL.json
[2025-10-19 07:12:37] drwx------ 5 boinc boinc      4096 Oct 19 07:08 pilot3
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc       523 Oct 19 07:09 boinc_task_state.xml
[2025-10-19 07:12:37] -rw------- 1 boinc boinc       972 Oct 19 07:09 memory_monitor_summary.json
[2025-10-19 07:12:37] -rw------- 1 boinc boinc     26842 Oct 19 07:09 log.46771637._040922.job.log.tgz.1
[2025-10-19 07:12:37] -rw------- 1 boinc boinc        95 Oct 19 07:11 pilot_heartbeat.json
[2025-10-19 07:12:37] -rw------- 1 boinc boinc      8433 Oct 19 07:11 heartbeat.json
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc      8192 Oct 19 07:12 boinc_mmap_file
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc        23 Oct 19 07:12 wrapper_checkpoint.txt
[2025-10-19 07:12:37] -rw------- 1 boinc boinc      4752 Oct 19 07:12 pilotlog.txt
[2025-10-19 07:12:37] -rw------- 1 boinc boinc     86108 Oct 19 07:12 log.46771637._040922.job.log.1
[2025-10-19 07:12:37] -rw------- 1 boinc boinc       188 Oct 19 07:12 output.list
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc       620 Oct 19 07:12 runtime_log
[2025-10-19 07:12:37] -rw------- 1 boinc boinc    133120 Oct 19 07:12 result.tar.gz
[2025-10-19 07:12:37] -rw------- 1 boinc boinc       649 Oct 19 07:12 vFhKDmYgIU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPwbMDmzzZ1vn.diag
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc      8629 Oct 19 07:12 runtime_log.err
[2025-10-19 07:12:37] -rw-r--r-- 1 boinc boinc      6665 Oct 19 07:12 stderr.txt
[2025-10-19 07:12:37] No HITS result produced
[2025-10-19 07:12:37]  *** Contents of shared directory: ***
[2025-10-19 07:12:37] total 224316
[2025-10-19 07:12:37] -rw-r--r-- 2 boinc boinc 228967208 Oct 19 07:08 ATLAS.root_0
[2025-10-19 07:12:37] -rw-r--r-- 2 boinc boinc    569668 Oct 19 07:08 input.tar.gz
[2025-10-19 07:12:37] -rw-r--r-- 2 boinc boinc     15120 Oct 19 07:08 start_atlas.sh
[2025-10-19 07:12:37] -rw------- 1 boinc boinc    133120 Oct 19 07:12 result.tar.gz
07:12:39 (1864438): run_atlas exited; CPU time 37.272444
07:12:39 (1864438): called boinc_finish(0)

</stderr_txt>
]]>

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