Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:41:53 (3665737): wrapper (7.7.26015): starting
04:41:53 (3665737): wrapper: running run_atlas (--nthreads 3)
[2025-10-19 04:41:53] Arguments: --nthreads 3
[2025-10-19 04:41:53] Threads: 3
[2025-10-19 04:41:53] Checking for CVMFS
[2025-10-19 04:41:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 04:41:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 04:41:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 04:41:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 04:41:53] 2.9.2.0 3601240 202 53460 151872 2 57 29900694 36864000 0 130560 0 142366 99.996 6558 2962 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 04:41:53] CVMFS is ok
[2025-10-19 04:41:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 04:41:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 04:41:53] Further information can be found at the LHC@home message board.
[2025-10-19 04:41:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 04:41:53] Checking for apptainer binary...
[2025-10-19 04:41:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 04:41:53] Running /usr/bin/apptainer --version
[2025-10-19 04:41:53] apptainer version 1.4.1-1.1
[2025-10-19 04:41:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 04:41:54] cosA133
[2025-10-19 04:41:54] apptainer works
[2025-10-19 04:41:54] Set ATHENA_PROC_NUMBER=3
[2025-10-19 04:41:54] Set ATHENA_CORE_NUMBER=3
[2025-10-19 04:41:54] Starting ATLAS job with PandaID=6850175833
[2025-10-19 04:41:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 05:56:26]  *** The last 200 lines of the pilot log: ***
[2025-10-19 05:56:26]  protocol_id=None
[2025-10-19 05:56:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-19 05:56:26]  replicas=None
[2025-10-19 05:56:26]  scope=mc23_13p6TeV
[2025-10-19 05:56:26]  status=None
[2025-10-19 05:56:26]  status_code=0
[2025-10-19 05:56:26]  storage_token=
[2025-10-19 05:56:26]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6850175833/log.46808902._001780.job.log.tgz.1
[2025-10-19 05:56:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/ba/log.46808902._001780.job.log.tgz.1
[2025-10-19 05:56:26]  workdir=None
[2025-10-19 05:56:26] ]
[2025-10-19 05:56:26] 2025-10-19 03:55:49,994 | INFO     | transferring file log.46808902._001780.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6850175833/log.46808902._001780.job.log.tgz.1 to /local/data/boinc/
[2025-10-19 05:56:26] 2025-10-19 03:55:49,994 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6850175833/log.46808902._001780.job.log.tgz.1 /local/data/boinc/slots/0/log.46808902._0017
[2025-10-19 05:56:26] 2025-10-19 03:55:50,006 | INFO     | adding to output.list: log.46808902._001780.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/ba/log.46808902._001780.job.log.tg
[2025-10-19 05:56:26] 2025-10-19 03:55:50,007 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-19 05:56:26] 2025-10-19 03:55:50,007 | INFO     | summary of transferred files:
[2025-10-19 05:56:26] 2025-10-19 03:55:50,007 | INFO     |  -- lfn=log.46808902._001780.job.log.tgz.1, status_code=0, status=transferred
[2025-10-19 05:56:26] 2025-10-19 03:55:50,007 | INFO     | stage-out finished correctly
[2025-10-19 05:56:26] 2025-10-19 03:55:50,371 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-19 05:56:26] 2025-10-19 03:55:50,574 | INFO     | job 6850175833 has state=finished
[2025-10-19 05:56:26] 2025-10-19 03:55:50,575 | INFO     | preparing for final server update for job 6850175833 in state='finished'
[2025-10-19 05:56:26] 2025-10-19 03:55:50,576 | INFO     | this job has now completed (state=finished)
[2025-10-19 05:56:26] 2025-10-19 03:55:50,576 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-19 05:56:26] 2025-10-19 03:55:50,576 | INFO     | log transfer has been attempted: DONE
[2025-10-19 05:56:26] 2025-10-19 03:55:50,576 | INFO     | job 6850175833 has finished - writing final server update
[2025-10-19 05:56:26] 2025-10-19 03:55:50,577 | INFO     | total number of processed events: 400 (read)
[2025-10-19 05:56:26] 2025-10-19 03:55:50,578 | INFO     | executing command: lscpu
[2025-10-19 05:56:26] 2025-10-19 03:55:50,595 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-19 05:56:26] 2025-10-19 03:55:51,604 | INFO     | time since job start (4425s) is within the limit (172800.0s)
[2025-10-19 05:56:26] 2025-10-19 03:55:52,719 | INFO     | PID=3669470 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 05:56:26] 2025-10-19 03:55:53,247 | WARNING  | process 3675952 can no longer be monitored (due to stat problems) - aborting
[2025-10-19 05:56:26] 2025-10-19 03:55:53,247 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6850175833/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 05:56:26] 2025-10-19 03:55:53,326 | INFO     | number of running child processes to parent process 3675952: 1
[2025-10-19 05:56:26] 2025-10-19 03:55:53,327 | INFO     | maximum number of monitored processes: 6
[2025-10-19 05:56:26] 2025-10-19 03:55:53,720 | INFO     | time since job start (4427s) is within the limit (172800.0s)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,289 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-19 05:56:26] 2025-10-19 03:55:55,290 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4301.071833333334
[2025-10-19 05:56:26] 2025-10-19 03:55:55,291 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6850175833/memory_monitor_summary.json (trf name=prmon)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,291 | INFO     | extracted standard info from prmon json
[2025-10-19 05:56:26] 2025-10-19 03:55:55,291 | INFO     | extracted standard memory fields from prmon json
[2025-10-19 05:56:26] 2025-10-19 03:55:55,291 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | INFO     | fitting pss+swap vs Time
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | INFO     | sum of square deviations: 89127252.5
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | INFO     | sum of deviations: -12810050050.5
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | INFO     | mean x: 1760844039.5
[2025-10-19 05:56:26] 2025-10-19 03:55:55,292 | INFO     | mean y: 2500658.257575758
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | -- intersect: 253084466548.7645
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | intersect: 253084466548.7645
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | chi2: 0.11874123836137164
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | -- intersect: 253084466548.7645
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | current memory leak: -143.73 B/s (using 66 data points, chi2=0.12)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | could have reported an average CPU frequency of 4300 MHz (6 samples)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | ..............................
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . Timing measurements:
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . get job = 0 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . initial setup = 1 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . payload setup = 5 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . stage-in = 0 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . payload execution = 4398 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . stage-out = 0 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | . log creation = 0 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,293 | INFO     | ..............................
[2025-10-19 05:56:26] 2025-10-19 03:55:55,324 | INFO     | 
[2025-10-19 05:56:26] 2025-10-19 03:55:55,324 | INFO     | job summary report
[2025-10-19 05:56:26] 2025-10-19 03:55:55,324 | INFO     | --------------------------------------------------
[2025-10-19 05:56:26] 2025-10-19 03:55:55,324 | INFO     | PanDA job id: 6850175833
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | task id: 46808902
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | errors: (none)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | pilot state: finished 
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | transexitcode: 0
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | exeerrorcode: 0
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | exeerrordiag: 
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | exitcode: 0
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | exitmsg: OK
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | cpuconsumptiontime: 12478 s
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | nevents: 400
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | neventsw: 0
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | pid: 3675952
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | pgrp: 3675952
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | corecount: 3
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | event service: False
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | sizes: {0: 2348679, 1: 2348878, 7: 2349140, 11: 2349168, 4407: 2375380, 4408: 2384568, 4413: 2384706}
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | --------------------------------------------------
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | 
[2025-10-19 05:56:26] 2025-10-19 03:55:55,325 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-19 05:56:26] 2025-10-19 03:55:55,337 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | job 6850175833 has completed (purged errors)
[2025-10-19 05:56:26] 2025-10-19 03:55:55,338 | INFO     | overall cleanup function is called
[2025-10-19 05:56:26] 2025-10-19 03:55:56,345 | INFO     | --- collectZombieJob: --- 10, [3675952]
[2025-10-19 05:56:26] 2025-10-19 03:55:56,345 | INFO     | zombie collector waiting for pid 3675952
[2025-10-19 05:56:26] 2025-10-19 03:55:56,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 05:56:26] 2025-10-19 03:55:56,345 | INFO     | collected zombie processes
[2025-10-19 05:56:26] 2025-10-19 03:55:56,346 | INFO     | will attempt to kill all subprocesses of pid=3675952
[2025-10-19 05:56:26] 2025-10-19 03:55:56,401 | INFO     | process IDs to be killed: [3675952] (in reverse order)
[2025-10-19 05:56:26] 2025-10-19 03:55:56,432 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 05:56:26] 2025-10-19 03:55:56,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 05:56:26] 2025-10-19 03:55:56,433 | INFO     | did not find any defunct processes belonging to 3675952
[2025-10-19 05:56:26] 2025-10-19 03:55:56,435 | INFO     | did not find any defunct processes belonging to 3675952
[2025-10-19 05:56:26] 2025-10-19 03:55:56,435 | INFO     | ready for new job
[2025-10-19 05:56:26] 2025-10-19 03:55:56,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 05:56:26] 2025-10-19 03:55:56,435 | INFO     | ***************************************
[2025-10-19 05:56:26] 2025-10-19 03:55:56,436 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 05:56:26] 2025-10-19 03:55:56,436 | INFO     | ***************************************
[2025-10-19 05:56:26] 2025-10-19 03:55:56,436 | INFO     | 
[2025-10-19 05:56:26] 2025-10-19 03:55:56,436 | INFO     | architecture information:
[2025-10-19 05:56:26] 2025-10-19 03:55:56,436 | INFO     | executing command: cat /etc/os-release
[2025-10-19 05:56:26] 2025-10-19 03:55:56,446 | INFO     | cat /etc/os-release:
[2025-10-19 05:56:26] NAME="CentOS Linux"
[2025-10-19 05:56:26] VERSION="7 (Core)"
[2025-10-19 05:56:26] ID="centos"
[2025-10-19 05:56:26] ID_LIKE="rhel fedora"
[2025-10-19 05:56:26] VERSION_ID="7"
[2025-10-19 05:56:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 05:56:26] ANSI_COLOR="0;31"
[2025-10-19 05:56:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 05:56:26] HOME_URL="https://www.centos.org/"
[2025-10-19 05:56:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 05:56:26] 
[2025-10-19 05:56:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 05:56:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 05:56:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 05:56:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 05:56:26] 
[2025-10-19 05:56:26] 2025-10-19 03:55:56,446 | INFO     | ***************************************
[2025-10-19 05:56:26] 2025-10-19 03:55:56,950 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 05:56:26] 2025-10-19 03:55:56,963 | INFO     | sufficient remaining disk space (631902306304 B)
[2025-10-19 05:56:26] 2025-10-19 03:55:56,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 05:56:26] 2025-10-19 03:55:56,963 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 05:56:26] 2025-10-19 03:55:56,963 | INFO     | update_server=False
[2025-10-19 05:56:26] 2025-10-19 03:55:56,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 05:56:26] 2025-10-19 03:55:56,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 05:56:26] 2025-10-19 03:55:56,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 05:56:26] 2025-10-19 03:55:56,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 05:56:26] 2025-10-19 03:55:56,964 | INFO     | aborting loop
[2025-10-19 05:56:26] 2025-10-19 03:55:57,334 | INFO     | all data control threads have been joined
[2025-10-19 05:56:26] 2025-10-19 03:55:57,969 | INFO     | [job] retrieve thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:57,970 | INFO     | [job] queue monitor thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:57,971 | INFO     | [job] job monitor thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:57,994 | INFO     | all job control threads have been joined
[2025-10-19 05:56:26] 2025-10-19 03:55:58,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 05:56:26] 2025-10-19 03:55:58,134 | INFO     | all payload control threads have been joined
[2025-10-19 05:56:26] 2025-10-19 03:55:58,226 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,341 | INFO     | [data] control thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,369 | INFO     | [job] validate thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,550 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,565 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,756 | INFO     | [payload] validate_post thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,898 | INFO     | [data] copytool_in thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:58,998 | INFO     | [job] control thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:59,140 | INFO     | [payload] control thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:55:59,488 | INFO     | [payload] failed_post thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:56:00,058 | INFO     | [data] copytool_out thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:56:00,970 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:56:07,349 | INFO     | job.realtimelogging is not enabled
[2025-10-19 05:56:26] 2025-10-19 03:56:08,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 05:56:26] 2025-10-19 03:56:12,407 | INFO     | [monitor] cgroup control has ended
[2025-10-19 05:56:26] 2025-10-19 03:56:13,473 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555221632832)>', '<ExcThread(monitor, started 140554583127808)>']
[2025-10-19 05:56:26] 2025-10-19 03:56:18,477 | INFO     | all workflow threads have been joined
[2025-10-19 05:56:26] 2025-10-19 03:56:18,477 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 05:56:26] 2025-10-19 03:56:18,478 | INFO     | traces error code: 0
[2025-10-19 05:56:26] 2025-10-19 03:56:18,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | INFO     | PID=3669470 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | CRITICAL | thread 'MainThread' is not alive
[2025-10-19 05:56:26] 2025-10-19 03:56:26,824 | INFO     | [monitor] control thread has ended
[2025-10-19 05:56:26] 2025-10-19 03:56:26,869 [wrapper] ==== pilot stdout END ====
[2025-10-19 05:56:26] 2025-10-19 03:56:26,871 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 05:56:26] 2025-10-19 03:56:26,874 [wrapper] pilotpid: 3669470
[2025-10-19 05:56:26] 2025-10-19 03:56:26,877 [wrapper] Pilot exit status: 0
[2025-10-19 05:56:26] 2025-10-19 03:56:26,885 [wrapper] pandaids: 6850175833
[2025-10-19 05:56:26] 2025-10-19 03:56:26,907 [wrapper] cleanup supervisor_pilot 3688345 3669471
[2025-10-19 05:56:26] 2025-10-19 03:56:26,910 [wrapper] Test setup, not cleaning
[2025-10-19 05:56:26] 2025-10-19 03:56:26,913 [wrapper] apfmon messages muted
[2025-10-19 05:56:26] 2025-10-19 03:56:26,915 [wrapper] ==== wrapper stdout END ====
[2025-10-19 05:56:26] 2025-10-19 03:56:26,918 [wrapper] ==== wrapper stderr END ====
[2025-10-19 05:56:26]  *** Error codes and diagnostics ***
[2025-10-19 05:56:26]     "exeErrorCode": 0,
[2025-10-19 05:56:26]     "exeErrorDiag": "",
[2025-10-19 05:56:26]     "pilotErrorCode": 0,
[2025-10-19 05:56:26]     "pilotErrorDiag": "",
[2025-10-19 05:56:26]  *** Listing of results directory ***
[2025-10-19 05:56:26] total 336168
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc    557409 Oct 18 14:38 pilot3.tar.gz
[2025-10-19 05:56:26] -rwx------ 1 boinc boinc     36292 Oct 18 14:50 runpilot2-wrapper.sh
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc      5112 Oct 18 14:50 queuedata.json
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc       100 Oct 19 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 05:56:26] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 04:41 run_atlas
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc       105 Oct 19 04:41 job.xml
[2025-10-19 05:56:26] -rw-r--r-- 2 boinc boinc 193121932 Oct 19 04:41 EVNT.46808900._000074.pool.root.1
[2025-10-19 05:56:26] -rw-r--r-- 2 boinc boinc    569670 Oct 19 04:41 input.tar.gz
[2025-10-19 05:56:26] -rw-r--r-- 2 boinc boinc     15120 Oct 19 04:41 start_atlas.sh
[2025-10-19 05:56:26] drwxrwx--x 2 boinc boinc      4096 Oct 19 04:41 shared
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc         0 Oct 19 04:41 boinc_setup_complete
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc      6275 Oct 19 04:41 init_data.xml
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc         0 Oct 19 04:41 boinc_lockfile
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc      2502 Oct 19 04:41 pandaJob.out
[2025-10-19 05:56:26] -rw------- 1 boinc boinc    976742 Oct 19 04:42 agis_schedconf.cvmfs.json
[2025-10-19 05:56:26] -rw------- 1 boinc boinc   1560740 Oct 19 04:42 agis_ddmendpoints.agis.ALL.json
[2025-10-19 05:56:26] drwx------ 5 boinc boinc      4096 Oct 19 04:42 pilot3
[2025-10-19 05:56:26] -rw------- 1 boinc boinc        95 Oct 19 05:55 pilot_heartbeat.json
[2025-10-19 05:56:26] -rw------- 1 boinc boinc 145406163 Oct 19 05:55 HITS.46808902._001780.pool.root.1
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc       530 Oct 19 05:55 boinc_task_state.xml
[2025-10-19 05:56:26] -rw------- 1 boinc boinc      1030 Oct 19 05:55 memory_monitor_summary.json
[2025-10-19 05:56:26] -rw------- 1 boinc boinc    247567 Oct 19 05:55 log.46808902._001780.job.log.tgz.1
[2025-10-19 05:56:26] -rw------- 1 boinc boinc      7768 Oct 19 05:55 heartbeat.json
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc        27 Oct 19 05:56 wrapper_checkpoint.txt
[2025-10-19 05:56:26] -rw------- 1 boinc boinc       817 Oct 19 05:56 pilotlog.txt
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc      8192 Oct 19 05:56 boinc_mmap_file
[2025-10-19 05:56:26] -rw------- 1 boinc boinc    656779 Oct 19 05:56 log.46808902._001780.job.log.1
[2025-10-19 05:56:26] -rw------- 1 boinc boinc       357 Oct 19 05:56 output.list
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc       620 Oct 19 05:56 runtime_log
[2025-10-19 05:56:26] -rw------- 1 boinc boinc    921600 Oct 19 05:56 result.tar.gz
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc      8782 Oct 19 05:56 runtime_log.err
[2025-10-19 05:56:26] -rw------- 1 boinc boinc       659 Oct 19 05:56 3EIKDmdZLU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcDxNDmIE1vfn.diag
[2025-10-19 05:56:26] -rw-r--r-- 1 boinc boinc     21835 Oct 19 05:56 stderr.txt
[2025-10-19 05:56:26] HITS file was successfully produced:
[2025-10-19 05:56:26] -rw------- 1 boinc boinc 145406163 Oct 19 05:55 shared/HITS.pool.root.1
[2025-10-19 05:56:26]  *** Contents of shared directory: ***
[2025-10-19 05:56:26] total 332080
[2025-10-19 05:56:26] -rw-r--r-- 2 boinc boinc 193121932 Oct 19 04:41 ATLAS.root_0
[2025-10-19 05:56:26] -rw-r--r-- 2 boinc boinc    569670 Oct 19 04:41 input.tar.gz
[2025-10-19 05:56:26] -rw-r--r-- 2 boinc boinc     15120 Oct 19 04:41 start_atlas.sh
[2025-10-19 05:56:26] -rw------- 1 boinc boinc 145406163 Oct 19 05:55 HITS.pool.root.1
[2025-10-19 05:56:26] -rw------- 1 boinc boinc    921600 Oct 19 05:56 result.tar.gz
05:56:48 (3665737): run_atlas exited; CPU time 12509.083831
05:56:48 (3665737): called boinc_finish(0)

</stderr_txt>
]]>

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