Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:07:32 (1788193): wrapper (7.7.26015): starting
03:07:32 (1788193): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 03:07:32] Arguments: --nthreads 4
[2025-10-19 03:07:32] Threads: 4
[2025-10-19 03:07:32] Checking for CVMFS
[2025-10-19 03:07:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 03:07:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 03:07:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 03:07:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 03:07:32] 2.9.2.0 85452 4251 99136 151869 3 57 23378444 36864001 0 130560 0 4475433 99.993 151941 2660 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 03:07:32] CVMFS is ok
[2025-10-19 03:07:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 03:07:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 03:07:32] Further information can be found at the LHC@home message board.
[2025-10-19 03:07:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 03:07:32] Checking for apptainer binary...
[2025-10-19 03:07:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 03:07:32] Running /usr/bin/apptainer --version
[2025-10-19 03:07:32] apptainer version 1.4.1-1.1
[2025-10-19 03:07:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 03:07:32] thA373a
[2025-10-19 03:07:32] apptainer works
[2025-10-19 03:07:32] Set ATHENA_PROC_NUMBER=4
[2025-10-19 03:07:32] Set ATHENA_CORE_NUMBER=4
[2025-10-19 03:07:32] Starting ATLAS job with PandaID=6848033251
[2025-10-19 03:07:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 04:27:52]  *** The last 200 lines of the pilot log: ***
[2025-10-19 04:27:52] 2025-10-19 02:27:20,158 | INFO     | overall cleanup function is called
[2025-10-19 04:27:52] 2025-10-19 02:27:21,165 | INFO     | --- collectZombieJob: --- 10, [1798540]
[2025-10-19 04:27:52] 2025-10-19 02:27:21,165 | INFO     | zombie collector waiting for pid 1798540
[2025-10-19 04:27:52] 2025-10-19 02:27:21,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 04:27:52] 2025-10-19 02:27:21,165 | INFO     | collected zombie processes
[2025-10-19 04:27:52] 2025-10-19 02:27:21,165 | INFO     | will attempt to kill all subprocesses of pid=1798540
[2025-10-19 04:27:52] 2025-10-19 02:27:21,216 | INFO     | process IDs to be killed: [1798540] (in reverse order)
[2025-10-19 04:27:52] 2025-10-19 02:27:21,250 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 04:27:52] 2025-10-19 02:27:21,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 04:27:52] 2025-10-19 02:27:21,252 | INFO     | did not find any defunct processes belonging to 1798540
[2025-10-19 04:27:52] 2025-10-19 02:27:21,253 | INFO     | did not find any defunct processes belonging to 1798540
[2025-10-19 04:27:52] 2025-10-19 02:27:21,253 | INFO     | ready for new job
[2025-10-19 04:27:52] 2025-10-19 02:27:21,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 04:27:52] 2025-10-19 02:27:21,254 | INFO     | ***************************************
[2025-10-19 04:27:52] 2025-10-19 02:27:21,254 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 04:27:52] 2025-10-19 02:27:21,254 | INFO     | ***************************************
[2025-10-19 04:27:52] 2025-10-19 02:27:21,254 | INFO     | 
[2025-10-19 04:27:52] 2025-10-19 02:27:21,255 | INFO     | architecture information:
[2025-10-19 04:27:52] 2025-10-19 02:27:21,255 | INFO     | executing command: cat /etc/os-release
[2025-10-19 04:27:52] 2025-10-19 02:27:21,268 | INFO     | cat /etc/os-release:
[2025-10-19 04:27:52] NAME="CentOS Linux"
[2025-10-19 04:27:52] VERSION="7 (Core)"
[2025-10-19 04:27:52] ID="centos"
[2025-10-19 04:27:52] ID_LIKE="rhel fedora"
[2025-10-19 04:27:52] VERSION_ID="7"
[2025-10-19 04:27:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 04:27:52] ANSI_COLOR="0;31"
[2025-10-19 04:27:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 04:27:52] HOME_URL="https://www.centos.org/"
[2025-10-19 04:27:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 04:27:52] 
[2025-10-19 04:27:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 04:27:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 04:27:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 04:27:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 04:27:52] 
[2025-10-19 04:27:52] 2025-10-19 02:27:21,268 | INFO     | ***************************************
[2025-10-19 04:27:52] 2025-10-19 02:27:21,772 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 04:27:52] 2025-10-19 02:27:21,788 | INFO     | sufficient remaining disk space (336796319744 B)
[2025-10-19 04:27:52] 2025-10-19 02:27:21,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 04:27:52] 2025-10-19 02:27:21,789 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 04:27:52] 2025-10-19 02:27:21,789 | INFO     | update_server=False
[2025-10-19 04:27:52] 2025-10-19 02:27:21,789 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 04:27:52] 2025-10-19 02:27:21,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 04:27:52] 2025-10-19 02:27:21,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 04:27:52] 2025-10-19 02:27:21,856 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-19 04:27:52] 2025-10-19 02:27:21,856 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-19 04:27:52] 2025-10-19 02:27:21,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 04:27:52] 2025-10-19 02:27:21,856 | INFO     | will abort loop
[2025-10-19 04:27:52] 2025-10-19 02:27:22,029 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 04:27:52] 2025-10-19 02:27:22,093 | INFO     | all payload control threads have been joined
[2025-10-19 04:27:52] 2025-10-19 02:27:22,532 | INFO     | all data control threads have been joined
[2025-10-19 04:27:52] 2025-10-19 02:27:22,795 | INFO     | [job] retrieve thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:22,795 | INFO     | [job] queue monitor thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:22,843 | INFO     | [payload] failed_post thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:22,862 | INFO     | [job] job monitor thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:23,087 | INFO     | [payload] validate_post thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:23,098 | INFO     | [payload] control thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:23,157 | INFO     | all job control threads have been joined
[2025-10-19 04:27:52] 2025-10-19 02:27:23,537 | INFO     | [data] control thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:23,808 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:23,864 | INFO     | [job] validate thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:23,907 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:24,035 | INFO     | [data] copytool_out thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:24,163 | INFO     | [job] control thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:24,249 | INFO     | [data] copytool_in thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:24,270 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:25,796 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:32,200 | INFO     | job.realtimelogging is not enabled
[2025-10-19 04:27:52] 2025-10-19 02:27:33,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 04:27:52] 2025-10-19 02:27:44,555 | INFO     | [monitor] cgroup control has ended
[2025-10-19 04:27:52] 2025-10-19 02:27:45,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662645077824)>', '<ExcThread(monitor, started 140661856663296)>']
[2025-10-19 04:27:52] 2025-10-19 02:27:50,638 | INFO     | all workflow threads have been joined
[2025-10-19 04:27:52] 2025-10-19 02:27:50,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 04:27:52] 2025-10-19 02:27:50,639 | INFO     | traces error code: 0
[2025-10-19 04:27:52] 2025-10-19 02:27:50,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 04:27:52] 2025-10-19 02:27:52,121 | INFO     | PID=1791982 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 04:27:52] 2025-10-19 02:27:52,121 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 04:27:52] 2025-10-19 02:27:52,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 04:27:52] 2025-10-19 02:27:52,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 04:27:52] 2025-10-19 02:27:52,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 04:27:52] 2025-10-19 02:27:52,121 | INFO     | [monitor] control thread has ended
[2025-10-19 04:27:52] 2025-10-19 02:27:52,203 [wrapper] ==== pilot stdout END ====
[2025-10-19 04:27:52] 2025-10-19 02:27:52,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 04:27:52] 2025-10-19 02:27:52,211 [wrapper] pilotpid: 1791982
[2025-10-19 04:27:52] 2025-10-19 02:27:52,214 [wrapper] Pilot exit status: 0
[2025-10-19 04:27:52] 2025-10-19 02:27:52,226 [wrapper] pandaids: 6848033251
[2025-10-19 04:27:52] 2025-10-19 02:27:52,247 [wrapper] cleanup supervisor_pilot 1810941 1791983
[2025-10-19 04:27:52] 2025-10-19 02:27:52,251 [wrapper] Test setup, not cleaning
[2025-10-19 04:27:52] 2025-10-19 02:27:52,254 [wrapper] apfmon messages muted
[2025-10-19 04:27:52] 2025-10-19 02:27:52,258 [wrapper] ==== wrapper stdout END ====
[2025-10-19 04:27:52] 2025-10-19 02:27:52,261 [wrapper] ==== wrapper stderr END ====
[2025-10-19 04:27:52]  *** Error codes and diagnostics ***
[2025-10-19 04:27:52]     "exeErrorCode": 0,
[2025-10-19 04:27:52]     "exeErrorDiag": "",
[2025-10-19 04:27:52]     "pilotErrorCode": 0,
[2025-10-19 04:27:52]     "pilotErrorDiag": "",
[2025-10-19 04:27:52]  *** Listing of results directory ***
[2025-10-19 04:27:52] total 433816
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc      5112 Oct 18 12:41 queuedata.json
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc    557409 Oct 18 12:41 pilot3.tar.gz
[2025-10-19 04:27:52] -rwx------ 1 boinc boinc     36292 Oct 18 12:43 runpilot2-wrapper.sh
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc       100 Oct 19 03:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 04:27:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 03:07 run_atlas
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc       105 Oct 19 03:07 job.xml
[2025-10-19 04:27:52] -rw-r--r-- 2 boinc boinc 227732112 Oct 19 03:07 EVNT.46771634._001769.pool.root.1
[2025-10-19 04:27:52] -rw-r--r-- 2 boinc boinc    569675 Oct 19 03:07 input.tar.gz
[2025-10-19 04:27:52] -rw-r--r-- 2 boinc boinc     15120 Oct 19 03:07 start_atlas.sh
[2025-10-19 04:27:52] drwxrwx--x 2 boinc boinc      4096 Oct 19 03:07 shared
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc         0 Oct 19 03:07 boinc_setup_complete
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc      6376 Oct 19 03:07 init_data.xml
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc         0 Oct 19 03:07 boinc_lockfile
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc      2558 Oct 19 03:07 pandaJob.out
[2025-10-19 04:27:52] -rw------- 1 boinc boinc    976750 Oct 19 03:07 agis_schedconf.cvmfs.json
[2025-10-19 04:27:52] -rw------- 1 boinc boinc   1560740 Oct 19 03:07 agis_ddmendpoints.agis.ALL.json
[2025-10-19 04:27:52] drwx------ 5 boinc boinc      4096 Oct 19 03:07 pilot3
[2025-10-19 04:27:52] -rw------- 1 boinc boinc 210678367 Oct 19 04:26 HITS.46771637._041771.pool.root.1
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc       530 Oct 19 04:27 boinc_task_state.xml
[2025-10-19 04:27:52] -rw------- 1 boinc boinc        95 Oct 19 04:27 pilot_heartbeat.json
[2025-10-19 04:27:52] -rw------- 1 boinc boinc      1032 Oct 19 04:27 memory_monitor_summary.json
[2025-10-19 04:27:52] -rw------- 1 boinc boinc    259455 Oct 19 04:27 log.46771637._041771.job.log.tgz.1
[2025-10-19 04:27:52] -rw------- 1 boinc boinc      7756 Oct 19 04:27 heartbeat.json
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc        27 Oct 19 04:27 wrapper_checkpoint.txt
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc      8192 Oct 19 04:27 boinc_mmap_file
[2025-10-19 04:27:52] -rw------- 1 boinc boinc       747 Oct 19 04:27 pilotlog.txt
[2025-10-19 04:27:52] -rw------- 1 boinc boinc    704315 Oct 19 04:27 log.46771637._041771.job.log.1
[2025-10-19 04:27:52] -rw------- 1 boinc boinc       357 Oct 19 04:27 output.list
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc       620 Oct 19 04:27 runtime_log
[2025-10-19 04:27:52] -rw------- 1 boinc boinc    983040 Oct 19 04:27 result.tar.gz
[2025-10-19 04:27:52] -rw------- 1 boinc boinc       659 Oct 19 04:27 uESMDmhaJU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbtwNDmvdDsNm.diag
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc      8782 Oct 19 04:27 runtime_log.err
[2025-10-19 04:27:52] -rw-r--r-- 1 boinc boinc     11031 Oct 19 04:27 stderr.txt
[2025-10-19 04:27:52] HITS file was successfully produced:
[2025-10-19 04:27:52] -rw------- 1 boinc boinc 210678367 Oct 19 04:26 shared/HITS.pool.root.1
[2025-10-19 04:27:52]  *** Contents of shared directory: ***
[2025-10-19 04:27:52] total 429684
[2025-10-19 04:27:52] -rw-r--r-- 2 boinc boinc 227732112 Oct 19 03:07 ATLAS.root_0
[2025-10-19 04:27:52] -rw-r--r-- 2 boinc boinc    569675 Oct 19 03:07 input.tar.gz
[2025-10-19 04:27:52] -rw-r--r-- 2 boinc boinc     15120 Oct 19 03:07 start_atlas.sh
[2025-10-19 04:27:52] -rw------- 1 boinc boinc 210678367 Oct 19 04:26 HITS.pool.root.1
[2025-10-19 04:27:52] -rw------- 1 boinc boinc    983040 Oct 19 04:27 result.tar.gz
04:27:53 (1788193): run_atlas exited; CPU time 18089.252346
04:27:53 (1788193): called boinc_finish(0)

</stderr_txt>
]]>

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