Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:15:20 (1142088): wrapper (7.7.26015): starting
11:15:20 (1142088): wrapper: running run_atlas (--nthreads 8)
[2025-10-18 11:15:20] Arguments: --nthreads 8
[2025-10-18 11:15:20] Threads: 8
[2025-10-18 11:15:20] Checking for CVMFS
[2025-10-18 11:15:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 11:15:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 11:15:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 11:15:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 11:15:21] 2.13.2.0 1483043 138067 493552 151857 3 294 35049175 40960000 30252 16776704 0 557458407 99.770 336895339 16601 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-18 11:15:21] CVMFS is ok
[2025-10-18 11:15:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 11:15:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 11:15:21] Further information can be found at the LHC@home message board.
[2025-10-18 11:15:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 11:15:21] Checking for apptainer binary...
[2025-10-18 11:15:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 11:15:21] Running /usr/bin/apptainer --version
[2025-10-18 11:15:21] apptainer version 1.4.3-1.el9
[2025-10-18 11:15:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 11:15:21] c7-4-30.aglt2.org
[2025-10-18 11:15:21] apptainer works
[2025-10-18 11:15:21] Set ATHENA_PROC_NUMBER=8
[2025-10-18 11:15:21] Set ATHENA_CORE_NUMBER=8
[2025-10-18 11:15:21] Starting ATLAS job with PandaID=6848018599
[2025-10-18 11:15:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 13:16:31]  *** The last 200 lines of the pilot log: ***
[2025-10-18 13:16:31] 2025-10-18 17:15:07,707 | INFO     | fitting pss+swap vs Time
[2025-10-18 13:16:31] 2025-10-18 17:15:07,708 | INFO     | sum of square deviations: 471592473.13043594
[2025-10-18 13:16:31] 2025-10-18 17:15:07,708 | INFO     | sum of deviations: 7747277854.130443
[2025-10-18 13:16:31] 2025-10-18 17:15:07,708 | INFO     | mean x: 1760804132.0869565
[2025-10-18 13:16:31] 2025-10-18 17:15:07,708 | INFO     | mean y: 2185287.6869565216
[2025-10-18 13:16:31] 2025-10-18 17:15:07,708 | INFO     | -- intersect: -28924143343.95263
[2025-10-18 13:16:31] 2025-10-18 17:15:07,709 | INFO     | intersect: -28924143343.95263
[2025-10-18 13:16:31] 2025-10-18 17:15:07,709 | INFO     | chi2: 1.7654149800903292
[2025-10-18 13:16:31] 2025-10-18 17:15:07,709 | INFO     | sum of square deviations: 412712862.76363593
[2025-10-18 13:16:31] 2025-10-18 17:15:07,709 | INFO     | sum of deviations: 7691763890.745457
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | mean x: 1760803979.581818
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | mean y: 2185135.9727272727
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | -- intersect: -32814064830.495872
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | intersect: -32814064830.495872
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | chi2: 1.7677280553472263
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | current chi2=1.7677280553472263 (change=-0.13102161718254013 %)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | right removable region: 109
[2025-10-18 13:16:31] 2025-10-18 17:15:07,710 | INFO     | sum of square deviations: 412713900.59090906
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | sum of deviations: -9006160209.954544
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | mean x: 1760804284.590909
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | mean y: 2227970.2454545456
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | -- intersect: 38426146967.631004
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | intersect: 38426146967.631004
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | chi2: 0.17591919265717698
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | current chi2=0.17591919265717698 (change=90.03524980578923 %)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,711 | INFO     | sum of square deviations: 358951703.0476186
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | sum of deviations: -11689329447.999992
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | mean x: 1760804437.0952382
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | mean y: 2235390.6
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | -- intersect: 57343161715.65472
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | intersect: 57343161715.65472
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | chi2: 0.08831454923924106
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | current chi2=0.08831454923924106 (change=49.798229570468585 %)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,712 | INFO     | sum of square deviations: 310073318.00000066
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | sum of deviations: -11031701530.399998
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | mean x: 1760804589.6
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | mean y: 2233295.04
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | -- intersect: 62647645067.70216
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | intersect: 62647645067.70216
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | chi2: 0.08313937684010658
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | current chi2=0.08313937684010658 (change=5.859931850090881 %)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | left removable region: 30
[2025-10-18 13:16:31] 2025-10-18 17:15:07,713 | INFO     | sum of square deviations: 152873693.18987346
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | sum of deviations: -6584276591.253164
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | mean x: 1760804864.101266
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | mean y: 2220139.5316455695
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | -- intersect: 75840161949.88004
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | intersect: 75840161949.88004
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | chi2: 0.07096224123474745
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | -- intersect: 75840161949.88004
[2025-10-18 13:16:31] 2025-10-18 17:15:07,714 | INFO     | current memory leak: -43.07 B/s (using 79 data points, chi2=0.07)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | could have reported an average CPU frequency of 3096 MHz (7 samples)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | ..............................
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . Timing measurements:
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . get job = 0 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . initial setup = 3 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . payload setup = 34 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . stage-in = 0 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . payload execution = 7039 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . stage-out = 0 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | . log creation = 0 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,715 | INFO     | ..............................
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | 
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | job summary report
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | --------------------------------------------------
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | PanDA job id: 6848018599
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | task id: 46771637
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | errors: (none)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | pilot state: finished 
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | transexitcode: 0
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | exeerrorcode: 0
[2025-10-18 13:16:31] 2025-10-18 17:15:07,789 | INFO     | exeerrordiag: 
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | exitcode: 0
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | exitmsg: OK
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | cpuconsumptiontime: 35408 s
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | nevents: 400
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | neventsw: 0
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | pid: 1158241
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | pgrp: 1158241
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | corecount: 8
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | event service: False
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | sizes: {0: 2348758, 1: 2348957, 12: 2348957, 16: 2349247, 23: 2349275, 7077: 2376419, 7078: 2376546, 7079: 2385600, 7081: 2385656, 7115: 2385850}
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | --------------------------------------------------
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | 
[2025-10-18 13:16:31] 2025-10-18 17:15:07,790 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-18 13:16:31] 2025-10-18 17:15:07,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,980 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,980 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | job 6848018599 has completed (purged errors)
[2025-10-18 13:16:31] 2025-10-18 17:15:07,982 | INFO     | overall cleanup function is called
[2025-10-18 13:16:31] 2025-10-18 17:15:08,990 | INFO     | --- collectZombieJob: --- 10, [1158241]
[2025-10-18 13:16:31] 2025-10-18 17:15:08,990 | INFO     | zombie collector waiting for pid 1158241
[2025-10-18 13:16:31] 2025-10-18 17:15:08,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 13:16:31] 2025-10-18 17:15:08,991 | INFO     | collected zombie processes
[2025-10-18 13:16:31] 2025-10-18 17:15:08,991 | INFO     | will attempt to kill all subprocesses of pid=1158241
[2025-10-18 13:16:31] 2025-10-18 17:15:09,658 | INFO     | process IDs to be killed: [1158241] (in reverse order)
[2025-10-18 13:16:31] 2025-10-18 17:15:09,902 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 13:16:31] 2025-10-18 17:15:09,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 13:16:31] 2025-10-18 17:15:09,926 | INFO     | did not find any defunct processes belonging to 1158241
[2025-10-18 13:16:31] 2025-10-18 17:15:09,951 | INFO     | did not find any defunct processes belonging to 1158241
[2025-10-18 13:16:31] 2025-10-18 17:15:09,951 | INFO     | ready for new job
[2025-10-18 13:16:31] 2025-10-18 17:15:09,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 13:16:31] 2025-10-18 17:15:09,953 | INFO     | ***************************************
[2025-10-18 13:16:31] 2025-10-18 17:15:09,953 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 13:16:31] 2025-10-18 17:15:09,953 | INFO     | ***************************************
[2025-10-18 13:16:31] 2025-10-18 17:15:09,953 | INFO     | 
[2025-10-18 13:16:31] 2025-10-18 17:15:09,981 | INFO     | architecture information:
[2025-10-18 13:16:31] 2025-10-18 17:15:09,982 | INFO     | executing command: cat /etc/os-release
[2025-10-18 13:16:31] 2025-10-18 17:15:10,020 | INFO     | cat /etc/os-release:
[2025-10-18 13:16:31] NAME="CentOS Linux"
[2025-10-18 13:16:31] VERSION="7 (Core)"
[2025-10-18 13:16:31] ID="centos"
[2025-10-18 13:16:31] ID_LIKE="rhel fedora"
[2025-10-18 13:16:31] VERSION_ID="7"
[2025-10-18 13:16:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 13:16:31] ANSI_COLOR="0;31"
[2025-10-18 13:16:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 13:16:31] HOME_URL="https://www.centos.org/"
[2025-10-18 13:16:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 13:16:31] 
[2025-10-18 13:16:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 13:16:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 13:16:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 13:16:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 13:16:31] 
[2025-10-18 13:16:31] 2025-10-18 17:15:10,021 | INFO     | ***************************************
[2025-10-18 13:16:31] 2025-10-18 17:15:10,523 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-18 13:16:31] 2025-10-18 17:15:10,553 | INFO     | sufficient remaining disk space (126999330816 B)
[2025-10-18 13:16:31] 2025-10-18 17:15:10,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 13:16:31] 2025-10-18 17:15:10,553 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 13:16:31] 2025-10-18 17:15:10,553 | INFO     | update_server=False
[2025-10-18 13:16:31] 2025-10-18 17:15:10,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 13:16:31] 2025-10-18 17:15:10,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 13:16:31] 2025-10-18 17:15:10,742 | INFO     | all job control threads have been joined
[2025-10-18 13:16:31] 2025-10-18 17:15:10,766 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-18 13:16:31] 2025-10-18 17:15:10,766 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-18 13:16:31] 2025-10-18 17:15:10,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 13:16:31] 2025-10-18 17:15:10,766 | INFO     | will abort loop
[2025-10-18 13:16:31] 2025-10-18 17:15:10,844 | INFO     | all payload control threads have been joined
[2025-10-18 13:16:31] 2025-10-18 17:15:11,241 | INFO     | all data control threads have been joined
[2025-10-18 13:16:31] 2025-10-18 17:15:11,559 | INFO     | [job] retrieve thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:11,749 | INFO     | [job] control thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:11,753 | INFO     | [data] copytool_in thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:11,762 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:11,772 | INFO     | [job] job monitor thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:11,850 | INFO     | [payload] control thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:11,900 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,059 | INFO     | [payload] failed_post thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,076 | INFO     | [payload] validate_post thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 13:16:31] 2025-10-18 17:15:12,186 | INFO     | [job] validate thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,213 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,247 | INFO     | [data] control thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,563 | INFO     | [data] copytool_out thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,802 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:12,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 13:16:31] 2025-10-18 17:15:13,815 | INFO     | [job] queue monitor thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:16,159 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 13:16:31] 2025-10-18 17:15:40,047 | INFO     | PID=1147638 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 13:16:31] 2025-10-18 17:15:40,048 | INFO     | .. there are 63 such processes running
[2025-10-18 13:16:31] 2025-10-18 17:15:40,048 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 13:16:31] 2025-10-18 17:15:40,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 13:16:31] 2025-10-18 17:15:40,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 13:16:31] 2025-10-18 17:15:47,707 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-10-18 13:16:31] 2025-10-18 17:16:04,141 | INFO     | [monitor] cgroup control has ended
[2025-10-18 13:16:31] 2025-10-18 17:16:04,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139942366758720)>', '<ExcThread(monitor, started 139941434615552)>']
[2025-10-18 13:16:31] 2025-10-18 17:16:05,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 13:16:31] 2025-10-18 17:16:05,233 | INFO     | [monitor] control thread has ended
[2025-10-18 13:16:31] 2025-10-18 17:16:09,850 | INFO     | all workflow threads have been joined
[2025-10-18 13:16:31] 2025-10-18 17:16:09,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 13:16:31] 2025-10-18 17:16:09,850 | INFO     | traces error code: 0
[2025-10-18 13:16:31] 2025-10-18 17:16:09,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 13:16:31] 2025-10-18 17:16:10,157 [wrapper] ==== pilot stdout END ====
[2025-10-18 13:16:31] 2025-10-18 17:16:10,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 13:16:31] 2025-10-18 17:16:10,192 [wrapper] pilotpid: 1147638
[2025-10-18 13:16:31] 2025-10-18 17:16:10,222 [wrapper] Pilot exit status: 0
[2025-10-18 13:16:31] 2025-10-18 17:16:10,264 [wrapper] pandaids: 6848018599
[2025-10-18 13:16:31] 2025-10-18 17:16:10,496 [wrapper] cleanup supervisor_pilot 1764816 1147639
[2025-10-18 13:16:31] 2025-10-18 17:16:10,524 [wrapper] Test setup, not cleaning
[2025-10-18 13:16:31] 2025-10-18 17:16:10,563 [wrapper] apfmon messages muted
[2025-10-18 13:16:31] 2025-10-18 17:16:10,616 [wrapper] ==== wrapper stdout END ====
[2025-10-18 13:16:31] 2025-10-18 17:16:10,649 [wrapper] ==== wrapper stderr END ====
[2025-10-18 13:16:31]  *** Error codes and diagnostics ***
[2025-10-18 13:16:31]     "exeErrorCode": 0,
[2025-10-18 13:16:31]     "exeErrorDiag": "",
[2025-10-18 13:16:31]     "pilotErrorCode": 0,
[2025-10-18 13:16:31]     "pilotErrorDiag": "",
[2025-10-18 13:16:31]  *** Listing of results directory ***
[2025-10-18 13:16:31] total 422016
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas    557409 Oct 17 21:18 pilot3.tar.gz
[2025-10-18 13:16:31] -rwx------. 1 boincer umatlas     36292 Oct 17 21:27 runpilot2-wrapper.sh
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas      5112 Oct 17 21:27 queuedata.json
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas       100 Oct 18 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 13:16:31] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 18 11:15 run_atlas
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas       105 Oct 18 11:15 job.xml
[2025-10-18 13:16:31] -rw-r--r--. 2 boincer umatlas 228669144 Oct 18 11:15 EVNT.46771634._001581.pool.root.1
[2025-10-18 13:16:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 11:15 start_atlas.sh
[2025-10-18 13:16:31] drwxrwx--x. 2 boincer umatlas      4096 Oct 18 11:15 shared
[2025-10-18 13:16:31] -rw-r--r--. 2 boincer umatlas    569670 Oct 18 11:15 input.tar.gz
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas         0 Oct 18 11:15 boinc_lockfile
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas      2558 Oct 18 11:15 pandaJob.out
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas    976750 Oct 18 11:15 agis_schedconf.cvmfs.json
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas   1560740 Oct 18 11:15 agis_ddmendpoints.agis.ALL.json
[2025-10-18 13:16:31] drwx------. 5 boincer umatlas      4096 Oct 18 11:15 pilot3
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas      6937 Oct 18 13:11 init_data.xml
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas 197003415 Oct 18 13:13 HITS.46771637._035578.pool.root.1
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas       529 Oct 18 13:13 boinc_task_state.xml
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas      1046 Oct 18 13:14 memory_monitor_summary.json
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas    359896 Oct 18 13:14 log.46771637._035578.job.log.tgz.1
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas      7778 Oct 18 13:15 heartbeat.json
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas        95 Oct 18 13:15 pilot_heartbeat.json
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas      5011 Oct 18 13:16 pilotlog.txt
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas    922186 Oct 18 13:16 log.46771637._035578.job.log.1
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas       357 Oct 18 13:16 output.list
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas       620 Oct 18 13:16 runtime_log
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas   1300480 Oct 18 13:16 result.tar.gz
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas       653 Oct 18 13:16 vsaMDm6tAU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmBDbMDmwhQ38n.diag
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas      8698 Oct 18 13:16 runtime_log.err
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas        27 Oct 18 13:16 wrapper_checkpoint.txt
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas      8192 Oct 18 13:16 boinc_mmap_file
[2025-10-18 13:16:31] -rw-r--r--. 1 boincer umatlas     21030 Oct 18 13:16 stderr.txt
[2025-10-18 13:16:31] HITS file was successfully produced:
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas 197003415 Oct 18 13:13 shared/HITS.pool.root.1
[2025-10-18 13:16:31]  *** Contents of shared directory: ***
[2025-10-18 13:16:31] total 417556
[2025-10-18 13:16:31] -rw-r--r--. 2 boincer umatlas 228669144 Oct 18 11:15 ATLAS.root_0
[2025-10-18 13:16:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 11:15 start_atlas.sh
[2025-10-18 13:16:31] -rw-r--r--. 2 boincer umatlas    569670 Oct 18 11:15 input.tar.gz
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas 197003415 Oct 18 13:13 HITS.pool.root.1
[2025-10-18 13:16:31] -rw-------. 1 boincer umatlas   1300480 Oct 18 13:16 result.tar.gz
13:16:33 (1142088): run_atlas exited; CPU time 35761.044839
13:16:33 (1142088): called boinc_finish(0)

</stderr_txt>
]]>

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