Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-18 13:55:57 (10820): vboxwrapper version 26210
2025-10-18 13:55:57 (10820): BOINC client version: 8.0.2
2025-10-18 13:55:58 (10820): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-10-18 13:55:58 (10820): Successfully copied 'init_data.xml' to the shared directory.
2025-10-18 13:55:58 (10820): Create VM. (boinc_d1cfb62bcce73720, slot#4)
2025-10-18 13:55:59 (10820): Setting Memory Size for VM. (4600MB)
2025-10-18 13:55:59 (10820): Setting CPU Count for VM. (6)
2025-10-18 13:55:59 (10820): Setting Chipset Options for VM.
2025-10-18 13:56:00 (10820): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-18 13:56:00 (10820): Setting Boot Options for VM.
2025-10-18 13:56:01 (10820): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-18 13:56:01 (10820): Enabling VM Network Access.
2025-10-18 13:56:01 (10820): Disabling USB Support for VM.
2025-10-18 13:56:01 (10820): Disabling COM Port Support for VM.
2025-10-18 13:56:02 (10820): Disabling LPT Port Support for VM.
2025-10-18 13:56:02 (10820): Disabling Audio Support for VM.
2025-10-18 13:56:02 (10820): Disabling Clipboard Support for VM.
2025-10-18 13:56:02 (10820): Disabling Drag and Drop Support for VM.
2025-10-18 13:56:03 (10820): Adding storage controller(s) to VM.
2025-10-18 13:56:03 (10820): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-18 13:56:04 (10820): Adding VirtualBox Guest Additions to VM.
2025-10-18 13:56:04 (10820): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-18 13:56:04 (10820): forwarding host port 8120 to guest port 80
2025-10-18 13:56:04 (10820): Enabling remote desktop for VM.
2025-10-18 13:56:05 (10820): Required extension pack not installed, remote desktop not enabled.
2025-10-18 13:56:05 (10820): Enabling shared directory for VM.
2025-10-18 13:56:05 (10820): Starting VM using VBoxManage interface. (boinc_d1cfb62bcce73720, slot#4)
2025-10-18 13:56:12 (10820): Successfully started VM. (PID = '6592')
2025-10-18 13:56:12 (10820): Reporting VM Process ID to BOINC.
2025-10-18 13:56:12 (10820): Guest Log: BIOS: VirtualBox 6.0.14
2025-10-18 13:56:12 (10820): Guest Log: CPUID EDX: 0x178bfbff
2025-10-18 13:56:12 (10820): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-18 13:56:12 (10820): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-18 13:56:12 (10820): Detected: Web Application Enabled (http://localhost:8120)
2025-10-18 13:56:12 (10820): Preference change detected
2025-10-18 13:56:12 (10820): Setting CPU throttle for VM. (100%)
2025-10-18 13:56:13 (10820): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-18 13:56:14 (10820): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-18 13:56:14 (10820): Guest Log: BIOS: Booting from Hard Disk...
2025-10-18 13:56:18 (10820): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-18 13:56:18 (10820): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-18 13:56:18 (10820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-18 13:56:26 (10820): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-18 13:56:26 (10820): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-18 13:56:39 (10820): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000282 main     Log opened 2025-10-18T13:56:37.703445000Z
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000446 main     OS Product: Linux
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000511 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000579 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000645 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000647 main     Process ID: 1341
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.000648 main     Package type: LINUX_64BITS_GENERIC
2025-10-18 13:56:39 (10820): Guest Log: 00:00:00.002502 main     5.2.32 r132073 started. Verbose level = 0
2025-10-18 13:56:40 (10820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-18 13:56:40 (10820): Guest Log: [INFO] Mounting shared directory
2025-10-18 13:56:40 (10820): Guest Log: [INFO] Checking for init_data.xml
2025-10-18 13:56:46 (10820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-18 13:56:46 (10820): Guest Log: [INFO] Detected branch: prod
2025-10-18 13:56:46 (10820): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-18 13:56:46 (10820): Guest Log: Copying input files
2025-10-18 13:56:49 (10820): Guest Log: 00:00:10.006241 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 212 078 466 000ns (GuestNow=1 760 821 009 786 900 000 ns GuestLast=1 760 795 797 708 434 000 ns fSetTimeLastLoop=true )
2025-10-18 13:56:50 (10820): Guest Log: Copied input files into RunAtlas.
2025-10-18 13:56:50 (10820): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-18 13:56:50 (10820): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-18 13:56:50 (10820): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-18 13:56:50 (10820): Guest Log: Further information can be found at the LHC@home message board.
2025-10-18 13:57:00 (10820): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-18 13:57:00 (10820): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-18 13:57:00 (10820): Guest Log: 2.6.3.0 1620 0 32200 151863 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-18 13:57:02 (10820): Guest Log: copied the webapp to /var/www
2025-10-18 13:57:02 (10820): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-18 13:57:02 (10820): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-18 13:57:02 (10820): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-18 13:57:02 (10820): Guest Log:  *** Starting ATLAS job. (PandaID=6848018270 taskID=46771637) ***
2025-10-18 14:56:18 (10820): VM state change detected. (old = 'running', new = 'paused')
2025-10-18 15:28:40 (10820): VM state change detected. (old = 'paused', new = 'running')
2025-10-18 15:28:43 (10820): Guest Log: 00:59:41.082244 timesync vgsvcTimeSyncWorker: Radical host time change: 1 952 294 000 000ns (HostNow=1 760 826 523 153 000 000 ns HostLast=1 760 824 570 859 000 000 ns)
2025-10-18 15:28:53 (10820): Guest Log: 00:59:51.083355 timesync vgsvcTimeSyncWorker: Radical guest time change: 1 952 292 310 000ns (GuestNow=1 760 826 533 154 363 000 ns GuestLast=1 760 824 580 862 053 000 ns fSetTimeLastLoop=true )
2025-10-18 16:08:43 (10820): Status Report: Elapsed Time: '6000.000000'
2025-10-18 16:08:43 (10820): Status Report: CPU Time: '29756.453125'
2025-10-18 16:28:59 (10820): VM state change detected. (old = 'running', new = 'paused')
2025-10-18 17:01:38 (10820): VM state change detected. (old = 'paused', new = 'running')
2025-10-18 17:01:42 (10820): Guest Log: 02:00:01.795961 timesync vgsvcTimeSyncWorker: Radical host time change: 1 968 232 000 000ns (HostNow=1 760 832 102 098 000 000 ns HostLast=1 760 830 133 866 000 000 ns)
2025-10-18 17:01:52 (10820): Guest Log: 02:00:11.797204 timesync vgsvcTimeSyncWorker: Radical guest time change: 1 968 232 970 000ns (GuestNow=1 760 832 112 099 391 000 ns GuestLast=1 760 830 143 866 421 000 ns fSetTimeLastLoop=true )
2025-10-18 18:21:30 (10820): Status Report: Elapsed Time: '12000.000000'
2025-10-18 18:21:30 (10820): Status Report: CPU Time: '65421.250000'
2025-10-18 20:01:37 (10820): Status Report: Elapsed Time: '18000.000000'
2025-10-18 20:01:37 (10820): Status Report: CPU Time: '101147.593750'
2025-10-18 21:41:45 (10820): Status Report: Elapsed Time: '24000.000000'
2025-10-18 21:41:45 (10820): Status Report: CPU Time: '136868.546875'
2025-10-18 23:21:52 (10820): Status Report: Elapsed Time: '30000.000000'
2025-10-18 23:21:52 (10820): Status Report: CPU Time: '172568.046875'
2025-10-18 23:44:55 (10820): Guest Log:  *** Job finished ***
2025-10-18 23:44:55 (10820): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:36,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:36,429 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:47,307 | INFO     | [monitor] cgroup control has ended
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:48,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667778144064)>', '<ExcThread(monitor, started 140667342804736)>']
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:48,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:48,897 | INFO     | [monitor] control thread has ended
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,290 | INFO     | all workflow threads have been joined
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,290 | INFO     | end of generic workflow (traces error code: 0)
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,291 | INFO     | traces error code: 0
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,556 [wrapper] ==== pilot stdout END ====
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,570 [wrapper] ==== wrapper stdout RESUME ====
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,584 [wrapper] pilotpid: 6050
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,603 [wrapper] Pilot exit status: 0
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,694 [wrapper] pandaids: 6848018270
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,795 [wrapper] cleanup supervisor_pilot  8703 6051
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,810 [wrapper] Test setup, not cleaning
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,821 [wrapper] apfmon messages muted
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,831 [wrapper] ==== wrapper stdout END ====
2025-10-18 23:44:55 (10820): Guest Log: 2025-10-19 06:44:53,840 [wrapper] ==== wrapper stderr END ====
2025-10-18 23:44:55 (10820): Guest Log:  *** Error codes and diagnostics ***
2025-10-18 23:44:55 (10820): Guest Log:     "exeErrorCode": 0,
2025-10-18 23:44:55 (10820): Guest Log:     "exeErrorDiag": "",
2025-10-18 23:44:55 (10820): Guest Log:     "pilotErrorCode": 0,
2025-10-18 23:44:55 (10820): Guest Log:     "pilotErrorDiag": "",
2025-10-18 23:44:55 (10820): Guest Log:  *** Listing of results directory ***
2025-10-18 23:44:56 (10820): Guest Log: total 217724
2025-10-18 23:44:56 (10820): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 18 01:10 pilot3.tar.gz
2025-10-18 23:44:56 (10820): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 18 01:15 queuedata.json
2025-10-18 23:44:56 (10820): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 18 01:17 runpilot2-wrapper.sh
2025-10-18 23:44:56 (10820): Guest Log: -rwxr-xr-x. 1 atlas atlas      9203 Oct 18 20:56 init_data.xml
2025-10-18 23:44:56 (10820): Guest Log: -rwxr-xr-x. 1 atlas atlas    569675 Oct 18 20:56 input.tar.gz
2025-10-18 23:44:56 (10820): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 18 20:56 start_atlas.sh
2025-10-18 23:44:56 (10820): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 18 20:56 EVNT.46771634._001570.pool.root.1 -> /data/./ATLAS.root_0
2025-10-18 23:44:56 (10820): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Oct 18 20:57 pandaJob.out
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas    976750 Oct 18 20:58 agis_schedconf.cvmfs.json
2025-10-18 23:44:56 (10820): Guest Log: drwx------. 5 atlas atlas      4096 Oct 18 20:58 pilot3
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas 209826058 Oct 19 06:42 HITS.46771637._035304.pool.root.1
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 19 06:43 memory_monitor_summary.json
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 19 06:43 agis_ddmendpoints.agis.ALL.json
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas    655474 Oct 19 06:43 log.46771637._035304.job.log.tgz.1
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas        97 Oct 19 06:43 pilot_heartbeat.json
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas      7829 Oct 19 06:44 heartbeat.json
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 19 06:44 pilotlog.txt
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas   3985980 Oct 19 06:44 log.46771637._035304.job.log.1
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas       357 Oct 19 06:44 output.list
2025-10-18 23:44:56 (10820): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 19 06:44 runtime_log
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas   4659200 Oct 19 06:44 result.tar.gz
2025-10-18 23:44:56 (10820): Guest Log: -rw-r--r--. 1 atlas atlas      8667 Oct 19 06:44 runtime_log.err
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas       669 Oct 19 06:44 clKKDm9kAU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgdvNDmXKKhOm.diag
2025-10-18 23:44:56 (10820): Guest Log: Looking for outputfile HITS.46771637._035304.pool.root.1
2025-10-18 23:44:56 (10820): Guest Log: HITS file was successfully produced
2025-10-18 23:44:56 (10820): Guest Log: -rw-------. 1 atlas atlas 209826058 Oct 19 06:42 /home/atlas/RunAtlas/HITS.46771637._035304.pool.root.1
2025-10-18 23:44:58 (10820): Guest Log: Successfully finished the ATLAS job!
2025-10-18 23:44:58 (10820): Guest Log: Copying the results back to the shared directory!
2025-10-18 23:44:58 (10820): Guest Log:  *** Contents of shared directory: ***
2025-10-18 23:44:58 (10820): Guest Log: total 431420
2025-10-18 23:44:58 (10820): Guest Log: -rwxrwxrwx. 1 root root 226678654 Oct 18 20:55 ATLAS.root_0
2025-10-18 23:44:58 (10820): Guest Log: -rwxrwxrwx. 1 root root 209826058 Oct 19 06:44 HITS.pool.root.1
2025-10-18 23:44:58 (10820): Guest Log: -rwxrwxrwx. 1 root root      9203 Oct 18 20:55 init_data.xml
2025-10-18 23:44:58 (10820): Guest Log: -rwxrwxrwx. 1 root root    569675 Oct 18 15:17 input.tar.gz
2025-10-18 23:44:58 (10820): Guest Log: -rwxrwxrwx. 1 root root   4659200 Oct 19 06:44 result.tar.gz
2025-10-18 23:44:58 (10820): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 18 15:17 start_atlas.sh
2025-10-18 23:44:58 (10820): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-18 23:44:59 (10820): VM Completion File Detected.
2025-10-18 23:44:59 (10820): Powering off VM.
2025-10-18 23:45:00 (10820): Successfully stopped VM.
2025-10-18 23:45:00 (10820): Deregistering VM. (boinc_d1cfb62bcce73720, slot#4)
2025-10-18 23:45:00 (10820): Removing network bandwidth throttle group from VM.
2025-10-18 23:45:01 (10820): Removing VM from VirtualBox.
2025-10-18 23:45:06 (10820): called boinc_finish(0)

</stderr_txt>
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