Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:31:53 (2271491): wrapper (7.7.26015): starting
04:31:53 (2271491): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 04:31:53] Arguments: --nthreads 4
[2025-10-19 04:31:53] Threads: 4
[2025-10-19 04:31:53] Checking for CVMFS
[2025-10-19 04:31:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 04:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 04:31:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 04:31:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 04:31:54] 2.9.2.0 279843 4200 94820 151872 2 57 35420370 36864000 0 130560 0 3536843 99.988 178634 2180 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 04:31:54] CVMFS is ok
[2025-10-19 04:31:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 04:31:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 04:31:54] Further information can be found at the LHC@home message board.
[2025-10-19 04:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 04:31:54] Checking for apptainer binary...
[2025-10-19 04:31:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 04:31:54] Running /usr/bin/apptainer --version
[2025-10-19 04:31:54] apptainer version 1.4.1-1.1
[2025-10-19 04:31:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 04:31:54] atlasA237
[2025-10-19 04:31:54] apptainer works
[2025-10-19 04:31:54] Set ATHENA_PROC_NUMBER=4
[2025-10-19 04:31:54] Set ATHENA_CORE_NUMBER=4
[2025-10-19 04:31:54] Starting ATLAS job with PandaID=6848024007
[2025-10-19 04:31:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 05:53:12]  *** The last 200 lines of the pilot log: ***
[2025-10-19 05:53:12] 2025-10-19 03:52:07,680 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 05:53:12] 2025-10-19 03:52:07,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 05:53:12] 2025-10-19 03:52:07,683 | INFO     | did not find any defunct processes belonging to 2281935
[2025-10-19 05:53:12] 2025-10-19 03:52:07,686 | INFO     | did not find any defunct processes belonging to 2281935
[2025-10-19 05:53:12] 2025-10-19 03:52:07,687 | INFO     | ready for new job
[2025-10-19 05:53:12] 2025-10-19 03:52:07,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 05:53:12] 2025-10-19 03:52:07,687 | INFO     | ***************************************
[2025-10-19 05:53:12] 2025-10-19 03:52:07,687 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 05:53:12] 2025-10-19 03:52:07,687 | INFO     | ***************************************
[2025-10-19 05:53:12] 2025-10-19 03:52:07,687 | INFO     | 
[2025-10-19 05:53:12] 2025-10-19 03:52:07,688 | INFO     | architecture information:
[2025-10-19 05:53:12] 2025-10-19 03:52:07,688 | INFO     | executing command: cat /etc/os-release
[2025-10-19 05:53:12] 2025-10-19 03:52:07,701 | INFO     | cat /etc/os-release:
[2025-10-19 05:53:12] NAME="CentOS Linux"
[2025-10-19 05:53:12] VERSION="7 (Core)"
[2025-10-19 05:53:12] ID="centos"
[2025-10-19 05:53:12] ID_LIKE="rhel fedora"
[2025-10-19 05:53:12] VERSION_ID="7"
[2025-10-19 05:53:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 05:53:12] ANSI_COLOR="0;31"
[2025-10-19 05:53:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 05:53:12] HOME_URL="https://www.centos.org/"
[2025-10-19 05:53:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 05:53:12] 
[2025-10-19 05:53:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 05:53:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 05:53:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 05:53:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 05:53:12] 
[2025-10-19 05:53:12] 2025-10-19 03:52:07,701 | INFO     | ***************************************
[2025-10-19 05:53:12] 2025-10-19 03:52:08,204 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | INFO     | sufficient remaining disk space (324476600320 B)
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | INFO     | update_server=False
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-19 05:53:12] 2025-10-19 03:52:08,218 | INFO     | aborting loop
[2025-10-19 05:53:12] 2025-10-19 03:52:08,219 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 05:53:12] 2025-10-19 03:52:08,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 05:53:12] 2025-10-19 03:52:08,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 05:53:12] 2025-10-19 03:52:08,361 | INFO     | all data control threads have been joined
[2025-10-19 05:53:12] 2025-10-19 03:52:08,379 | INFO     | all payload control threads have been joined
[2025-10-19 05:53:12] 2025-10-19 03:52:08,873 | INFO     | all job control threads have been joined
[2025-10-19 05:53:12] 2025-10-19 03:52:09,221 | INFO     | [job] job monitor thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:09,223 | INFO     | [job] queue monitor thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:09,223 | INFO     | [job] retrieve thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:09,367 | INFO     | [data] control thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:09,384 | INFO     | [payload] control thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:09,644 | INFO     | [payload] validate_post thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:09,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 05:53:12] 2025-10-19 03:52:09,877 | INFO     | [job] control thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,071 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,236 | INFO     | [job] validate thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,639 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,682 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,697 | INFO     | [data] copytool_in thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,739 | INFO     | [payload] failed_post thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:10,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 05:53:12] 2025-10-19 03:52:11,711 | INFO     | [data] copytool_out thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:52:14,938 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 05:53:12] 2025-10-19 03:53:07,049 | INFO     | [monitor] cgroup control has ended
[2025-10-19 05:53:12] 2025-10-19 03:53:07,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033627699008)>', '<ExcThread(monitor, started 140032836888320)>']
[2025-10-19 05:53:12] 2025-10-19 03:53:07,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 05:53:12] 2025-10-19 03:53:07,496 | INFO     | [monitor] control thread has ended
[2025-10-19 05:53:12] 2025-10-19 03:53:12,449 | INFO     | all workflow threads have been joined
[2025-10-19 05:53:12] 2025-10-19 03:53:12,449 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 05:53:12] 2025-10-19 03:53:12,449 | INFO     | traces error code: 0
[2025-10-19 05:53:12] 2025-10-19 03:53:12,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 05:53:12] 2025-10-19 03:53:12,518 [wrapper] ==== pilot stdout END ====
[2025-10-19 05:53:12] 2025-10-19 03:53:12,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 05:53:12] 2025-10-19 03:53:12,525 [wrapper] pilotpid: 2275301
[2025-10-19 05:53:12] 2025-10-19 03:53:12,529 [wrapper] Pilot exit status: 0
[2025-10-19 05:53:12] 2025-10-19 03:53:12,538 [wrapper] pandaids: 6848024007
[2025-10-19 05:53:12] 2025-10-19 03:53:12,565 [wrapper] cleanup supervisor_pilot 2303311 2275302
[2025-10-19 05:53:12] 2025-10-19 03:53:12,569 [wrapper] Test setup, not cleaning
[2025-10-19 05:53:12] 2025-10-19 03:53:12,573 [wrapper] apfmon messages muted
[2025-10-19 05:53:12] 2025-10-19 03:53:12,576 [wrapper] ==== wrapper stdout END ====
[2025-10-19 05:53:12] 2025-10-19 03:53:12,580 [wrapper] ==== wrapper stderr END ====
[2025-10-19 05:53:12]  *** Error codes and diagnostics ***
[2025-10-19 05:53:12]     "exeErrorCode": 0,
[2025-10-19 05:53:12]     "exeErrorDiag": "",
[2025-10-19 05:53:12]     "pilotErrorCode": 0,
[2025-10-19 05:53:12]     "pilotErrorDiag": "",
[2025-10-19 05:53:12]  *** Listing of results directory ***
[2025-10-19 05:53:12] total 432280
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc    557409 Oct 18 08:53 pilot3.tar.gz
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc      5112 Oct 18 08:59 queuedata.json
[2025-10-19 05:53:12] -rwx------ 1 boinc boinc     36292 Oct 18 08:59 runpilot2-wrapper.sh
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc       100 Oct 19 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 05:53:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 04:31 run_atlas
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc       105 Oct 19 04:31 job.xml
[2025-10-19 05:53:12] -rw-r--r-- 2 boinc boinc 226936503 Oct 19 04:31 EVNT.46771634._001700.pool.root.1
[2025-10-19 05:53:12] -rw-r--r-- 2 boinc boinc    569680 Oct 19 04:31 input.tar.gz
[2025-10-19 05:53:12] -rw-r--r-- 2 boinc boinc     15120 Oct 19 04:31 start_atlas.sh
[2025-10-19 05:53:12] drwxrwx--x 2 boinc boinc      4096 Oct 19 04:31 shared
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc         0 Oct 19 04:31 boinc_setup_complete
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc      6370 Oct 19 04:31 init_data.xml
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc         0 Oct 19 04:31 boinc_lockfile
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc      2558 Oct 19 04:31 pandaJob.out
[2025-10-19 05:53:12] -rw------- 1 boinc boinc    976742 Oct 19 04:32 agis_schedconf.cvmfs.json
[2025-10-19 05:53:12] -rw------- 1 boinc boinc   1560740 Oct 19 04:32 agis_ddmendpoints.agis.ALL.json
[2025-10-19 05:53:12] drwx------ 5 boinc boinc      4096 Oct 19 04:32 pilot3
[2025-10-19 05:53:12] -rw------- 1 boinc boinc        95 Oct 19 05:51 pilot_heartbeat.json
[2025-10-19 05:53:12] -rw------- 1 boinc boinc 209848510 Oct 19 05:51 HITS.46771637._038888.pool.root.1
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc       529 Oct 19 05:51 boinc_task_state.xml
[2025-10-19 05:53:12] -rw------- 1 boinc boinc      1034 Oct 19 05:51 memory_monitor_summary.json
[2025-10-19 05:53:12] -rw------- 1 boinc boinc    282730 Oct 19 05:51 log.46771637._038888.job.log.tgz.1
[2025-10-19 05:53:12] -rw------- 1 boinc boinc      7773 Oct 19 05:52 heartbeat.json
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc      8192 Oct 19 05:53 boinc_mmap_file
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc        27 Oct 19 05:53 wrapper_checkpoint.txt
[2025-10-19 05:53:12] -rw------- 1 boinc boinc      4556 Oct 19 05:53 pilotlog.txt
[2025-10-19 05:53:12] -rw------- 1 boinc boinc    704753 Oct 19 05:53 log.46771637._038888.job.log.1
[2025-10-19 05:53:12] -rw------- 1 boinc boinc       357 Oct 19 05:53 output.list
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc       620 Oct 19 05:53 runtime_log
[2025-10-19 05:53:12] -rw------- 1 boinc boinc   1003520 Oct 19 05:53 result.tar.gz
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc      8792 Oct 19 05:53 runtime_log.err
[2025-10-19 05:53:12] -rw------- 1 boinc boinc       662 Oct 19 05:53 IhtLDmi5FU8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5hbMDmUr8jjm.diag
[2025-10-19 05:53:12] -rw-r--r-- 1 boinc boinc      9894 Oct 19 05:53 stderr.txt
[2025-10-19 05:53:12] HITS file was successfully produced:
[2025-10-19 05:53:12] -rw------- 1 boinc boinc 209848510 Oct 19 05:51 shared/HITS.pool.root.1
[2025-10-19 05:53:12]  *** Contents of shared directory: ***
[2025-10-19 05:53:12] total 428116
[2025-10-19 05:53:12] -rw-r--r-- 2 boinc boinc 226936503 Oct 19 04:31 ATLAS.root_0
[2025-10-19 05:53:12] -rw-r--r-- 2 boinc boinc    569680 Oct 19 04:31 input.tar.gz
[2025-10-19 05:53:12] -rw-r--r-- 2 boinc boinc     15120 Oct 19 04:31 start_atlas.sh
[2025-10-19 05:53:12] -rw------- 1 boinc boinc 209848510 Oct 19 05:51 HITS.pool.root.1
[2025-10-19 05:53:12] -rw------- 1 boinc boinc   1003520 Oct 19 05:53 result.tar.gz
05:53:14 (2271491): run_atlas exited; CPU time 18250.244440
05:53:14 (2271491): called boinc_finish(0)

</stderr_txt>
]]>

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