Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:41:15 (1323013): wrapper (7.7.26015): starting
03:41:15 (1323013): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 03:41:15] Arguments: --nthreads 4
[2025-10-19 03:41:15] Threads: 4
[2025-10-19 03:41:15] Checking for CVMFS
[2025-10-19 03:41:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 03:41:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 03:41:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 03:41:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 03:41:15] 2.9.2.0 4165322 4213 93688 151870 0 57 29818679 36864000 0 130560 0 3467062 99.991 149199 2798 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 03:41:15] CVMFS is ok
[2025-10-19 03:41:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 03:41:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 03:41:15] Further information can be found at the LHC@home message board.
[2025-10-19 03:41:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 03:41:15] Checking for apptainer binary...
[2025-10-19 03:41:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 03:41:15] Running /usr/bin/apptainer --version
[2025-10-19 03:41:15] apptainer version 1.4.1-1.1
[2025-10-19 03:41:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 03:41:15] thA309
[2025-10-19 03:41:15] apptainer works
[2025-10-19 03:41:15] Set ATHENA_PROC_NUMBER=4
[2025-10-19 03:41:15] Set ATHENA_CORE_NUMBER=4
[2025-10-19 03:41:15] Starting ATLAS job with PandaID=6850175749
[2025-10-19 03:41:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 04:40:48]  *** The last 200 lines of the pilot log: ***
[2025-10-19 04:40:48] 2025-10-19 02:40:17,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 04:40:48] 2025-10-19 02:40:17,207 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 04:40:48] 2025-10-19 02:40:17,207 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 04:40:48] 2025-10-19 02:40:17,207 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 04:40:48] 2025-10-19 02:40:17,207 | INFO     | job 6850175749 has completed (purged errors)
[2025-10-19 04:40:48] 2025-10-19 02:40:17,207 | INFO     | overall cleanup function is called
[2025-10-19 04:40:48] 2025-10-19 02:40:18,214 | INFO     | --- collectZombieJob: --- 10, [1333364]
[2025-10-19 04:40:48] 2025-10-19 02:40:18,214 | INFO     | zombie collector waiting for pid 1333364
[2025-10-19 04:40:48] 2025-10-19 02:40:18,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 04:40:48] 2025-10-19 02:40:18,214 | INFO     | collected zombie processes
[2025-10-19 04:40:48] 2025-10-19 02:40:18,214 | INFO     | will attempt to kill all subprocesses of pid=1333364
[2025-10-19 04:40:48] 2025-10-19 02:40:18,265 | INFO     | process IDs to be killed: [1333364] (in reverse order)
[2025-10-19 04:40:48] 2025-10-19 02:40:18,301 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 04:40:48] 2025-10-19 02:40:18,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 04:40:48] 2025-10-19 02:40:18,304 | INFO     | did not find any defunct processes belonging to 1333364
[2025-10-19 04:40:48] 2025-10-19 02:40:18,306 | INFO     | did not find any defunct processes belonging to 1333364
[2025-10-19 04:40:48] 2025-10-19 02:40:18,306 | INFO     | ready for new job
[2025-10-19 04:40:48] 2025-10-19 02:40:18,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 04:40:48] 2025-10-19 02:40:18,306 | INFO     | ***************************************
[2025-10-19 04:40:48] 2025-10-19 02:40:18,307 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 04:40:48] 2025-10-19 02:40:18,307 | INFO     | ***************************************
[2025-10-19 04:40:48] 2025-10-19 02:40:18,307 | INFO     | 
[2025-10-19 04:40:48] 2025-10-19 02:40:18,307 | INFO     | architecture information:
[2025-10-19 04:40:48] 2025-10-19 02:40:18,307 | INFO     | executing command: cat /etc/os-release
[2025-10-19 04:40:48] 2025-10-19 02:40:18,323 | INFO     | cat /etc/os-release:
[2025-10-19 04:40:48] NAME="CentOS Linux"
[2025-10-19 04:40:48] VERSION="7 (Core)"
[2025-10-19 04:40:48] ID="centos"
[2025-10-19 04:40:48] ID_LIKE="rhel fedora"
[2025-10-19 04:40:48] VERSION_ID="7"
[2025-10-19 04:40:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 04:40:48] ANSI_COLOR="0;31"
[2025-10-19 04:40:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 04:40:48] HOME_URL="https://www.centos.org/"
[2025-10-19 04:40:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 04:40:48] 
[2025-10-19 04:40:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 04:40:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 04:40:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 04:40:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 04:40:48] 
[2025-10-19 04:40:48] 2025-10-19 02:40:18,323 | INFO     | ***************************************
[2025-10-19 04:40:48] 2025-10-19 02:40:18,826 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 04:40:48] 2025-10-19 02:40:18,845 | INFO     | sufficient remaining disk space (229805916160 B)
[2025-10-19 04:40:48] 2025-10-19 02:40:18,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | INFO     | update_server=False
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 04:40:48] 2025-10-19 02:40:18,846 | INFO     | aborting loop
[2025-10-19 04:40:48] 2025-10-19 02:40:19,128 | INFO     | all payload control threads have been joined
[2025-10-19 04:40:48] 2025-10-19 02:40:19,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 04:40:48] 2025-10-19 02:40:19,851 | INFO     | [job] retrieve thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:19,852 | INFO     | [job] queue monitor thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:19,852 | INFO     | [job] job monitor thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:19,881 | INFO     | [payload] failed_post thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:19,881 | INFO     | all data control threads have been joined
[2025-10-19 04:40:48] 2025-10-19 02:40:20,134 | INFO     | [payload] control thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:20,142 | INFO     | all job control threads have been joined
[2025-10-19 04:40:48] 2025-10-19 02:40:20,171 | INFO     | [data] copytool_in thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:20,422 | INFO     | [payload] validate_post thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:20,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:20,844 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:20,887 | INFO     | [data] control thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:21,148 | INFO     | [job] control thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:21,185 | INFO     | [job] validate thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:21,186 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:21,204 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:21,834 | INFO     | [data] copytool_out thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:22,852 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 04:40:48] 2025-10-19 02:40:27,791 | INFO     | [monitor] cgroup control has ended
[2025-10-19 04:40:48] 2025-10-19 02:40:29,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140213513975616)>', '<ExcThread(monitor, started 140212864792320)>']
[2025-10-19 04:40:48] 2025-10-19 02:40:34,439 | INFO     | all workflow threads have been joined
[2025-10-19 04:40:48] 2025-10-19 02:40:34,439 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 04:40:48] 2025-10-19 02:40:34,439 | INFO     | traces error code: 0
[2025-10-19 04:40:48] 2025-10-19 02:40:34,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 04:40:48] 2025-10-19 02:40:48,405 | INFO     | PID=1326801 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 04:40:48] 2025-10-19 02:40:48,406 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 04:40:48] 2025-10-19 02:40:48,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 04:40:48] 2025-10-19 02:40:48,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 04:40:48] 2025-10-19 02:40:48,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 04:40:48] 2025-10-19 02:40:48,406 | INFO     | [monitor] control thread has ended
[2025-10-19 04:40:48] 2025-10-19 02:40:48,486 [wrapper] ==== pilot stdout END ====
[2025-10-19 04:40:48] 2025-10-19 02:40:48,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 04:40:48] 2025-10-19 02:40:48,495 [wrapper] pilotpid: 1326801
[2025-10-19 04:40:48] 2025-10-19 02:40:48,499 [wrapper] Pilot exit status: 0
[2025-10-19 04:40:48] 2025-10-19 02:40:48,512 [wrapper] pandaids: 6850175749
[2025-10-19 04:40:48] 2025-10-19 02:40:48,536 [wrapper] cleanup supervisor_pilot 1343056 1326802
[2025-10-19 04:40:48] 2025-10-19 02:40:48,540 [wrapper] Test setup, not cleaning
[2025-10-19 04:40:48] 2025-10-19 02:40:48,543 [wrapper] apfmon messages muted
[2025-10-19 04:40:48] 2025-10-19 02:40:48,548 [wrapper] ==== wrapper stdout END ====
[2025-10-19 04:40:48] 2025-10-19 02:40:48,551 [wrapper] ==== wrapper stderr END ====
[2025-10-19 04:40:48]  *** Error codes and diagnostics ***
[2025-10-19 04:40:48]     "exeErrorCode": 0,
[2025-10-19 04:40:48]     "exeErrorDiag": "",
[2025-10-19 04:40:48]     "pilotErrorCode": 0,
[2025-10-19 04:40:48]     "pilotErrorDiag": "",
[2025-10-19 04:40:48]  *** Listing of results directory ***
[2025-10-19 04:40:48] total 335636
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc    557409 Oct 18 14:38 pilot3.tar.gz
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc      5112 Oct 18 14:50 queuedata.json
[2025-10-19 04:40:48] -rwx------ 1 boinc boinc     36292 Oct 18 14:51 runpilot2-wrapper.sh
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc       100 Oct 19 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 04:40:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 03:41 run_atlas
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc       105 Oct 19 03:41 job.xml
[2025-10-19 04:40:48] -rw-r--r-- 2 boinc boinc 189823722 Oct 19 03:41 EVNT.46808900._000071.pool.root.1
[2025-10-19 04:40:48] -rw-r--r-- 2 boinc boinc    569672 Oct 19 03:41 input.tar.gz
[2025-10-19 04:40:48] -rw-r--r-- 2 boinc boinc     15120 Oct 19 03:41 start_atlas.sh
[2025-10-19 04:40:48] drwxrwx--x 2 boinc boinc      4096 Oct 19 03:41 shared
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc         0 Oct 19 03:41 boinc_setup_complete
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc      6377 Oct 19 03:41 init_data.xml
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc         0 Oct 19 03:41 boinc_lockfile
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc      2502 Oct 19 03:41 pandaJob.out
[2025-10-19 04:40:48] -rw------- 1 boinc boinc    976750 Oct 19 03:41 agis_schedconf.cvmfs.json
[2025-10-19 04:40:48] -rw------- 1 boinc boinc   1560740 Oct 19 03:41 agis_ddmendpoints.agis.ALL.json
[2025-10-19 04:40:48] drwx------ 5 boinc boinc      4096 Oct 19 03:41 pilot3
[2025-10-19 04:40:48] -rw------- 1 boinc boinc 148437642 Oct 19 04:39 HITS.46808902._001696.pool.root.1
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc       529 Oct 19 04:39 boinc_task_state.xml
[2025-10-19 04:40:48] -rw------- 1 boinc boinc      1019 Oct 19 04:40 memory_monitor_summary.json
[2025-10-19 04:40:48] -rw------- 1 boinc boinc    240308 Oct 19 04:40 log.46808902._001696.job.log.tgz.1
[2025-10-19 04:40:48] -rw------- 1 boinc boinc      7769 Oct 19 04:40 heartbeat.json
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc      8192 Oct 19 04:40 boinc_mmap_file
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc        27 Oct 19 04:40 wrapper_checkpoint.txt
[2025-10-19 04:40:48] -rw------- 1 boinc boinc       747 Oct 19 04:40 pilotlog.txt
[2025-10-19 04:40:48] -rw------- 1 boinc boinc        95 Oct 19 04:40 pilot_heartbeat.json
[2025-10-19 04:40:48] -rw------- 1 boinc boinc    532036 Oct 19 04:40 log.46808902._001696.job.log.1
[2025-10-19 04:40:48] -rw------- 1 boinc boinc       357 Oct 19 04:40 output.list
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc       620 Oct 19 04:40 runtime_log
[2025-10-19 04:40:48] -rw------- 1 boinc boinc    788480 Oct 19 04:40 result.tar.gz
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc      8777 Oct 19 04:40 runtime_log.err
[2025-10-19 04:40:48] -rw------- 1 boinc boinc       657 Oct 19 04:40 DRyMDmbaLU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxDxNDmjnGIQm.diag
[2025-10-19 04:40:48] -rw-r--r-- 1 boinc boinc     11213 Oct 19 04:40 stderr.txt
[2025-10-19 04:40:48] HITS file was successfully produced:
[2025-10-19 04:40:48] -rw------- 1 boinc boinc 148437642 Oct 19 04:39 shared/HITS.pool.root.1
[2025-10-19 04:40:48]  *** Contents of shared directory: ***
[2025-10-19 04:40:48] total 331692
[2025-10-19 04:40:48] -rw-r--r-- 2 boinc boinc 189823722 Oct 19 03:41 ATLAS.root_0
[2025-10-19 04:40:48] -rw-r--r-- 2 boinc boinc    569672 Oct 19 03:41 input.tar.gz
[2025-10-19 04:40:48] -rw-r--r-- 2 boinc boinc     15120 Oct 19 03:41 start_atlas.sh
[2025-10-19 04:40:48] -rw------- 1 boinc boinc 148437642 Oct 19 04:39 HITS.pool.root.1
[2025-10-19 04:40:48] -rw------- 1 boinc boinc    788480 Oct 19 04:40 result.tar.gz
04:40:50 (1323013): run_atlas exited; CPU time 13022.288781
04:40:50 (1323013): called boinc_finish(0)

</stderr_txt>
]]>

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