Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:19 (25940): wrapper (7.7.26015): starting
10:33:19 (25940): wrapper: running run_atlas (--nthreads 12)
[2025-10-18 10:33:19] Arguments: --nthreads 12
[2025-10-18 10:33:19] Threads: 12
[2025-10-18 10:33:19] Checking for CVMFS
[2025-10-18 10:33:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 10:33:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 10:33:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 10:33:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 10:33:20] 2.11.2.0 2916 231600 101420 151855 1 59 13351301 20275201 1 130560 1 113900150 99.984 13717884 12706 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 10:33:20] CVMFS is ok
[2025-10-18 10:33:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 10:33:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 10:33:20] Further information can be found at the LHC@home message board.
[2025-10-18 10:33:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 10:33:20] Checking for apptainer binary...
[2025-10-18 10:33:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 10:33:20] Running /usr/bin/apptainer --version
[2025-10-18 10:33:20] apptainer version 1.3.2-1.el7
[2025-10-18 10:33:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 10:33:21] c-205-23.aglt2.org
[2025-10-18 10:33:21] apptainer works
[2025-10-18 10:33:21] Set ATHENA_PROC_NUMBER=12
[2025-10-18 10:33:21] Set ATHENA_CORE_NUMBER=12
[2025-10-18 10:33:21] Starting ATLAS job with PandaID=6849809097
[2025-10-18 10:33:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 11:32:50]  *** The last 200 lines of the pilot log: ***
[2025-10-18 11:32:50]  scope=mc23_13p6TeV
[2025-10-18 11:32:50]  status=None
[2025-10-18 11:32:50]  status_code=0
[2025-10-18 11:32:50]  storage_token=
[2025-10-18 11:32:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6849809097/log.46809188._001783.job.log.tgz.1
[2025-10-18 11:32:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/b3/log.46809188._001783.job.log.tgz.1
[2025-10-18 11:32:50]  workdir=None
[2025-10-18 11:32:50] ]
[2025-10-18 11:32:50] 2025-10-18 15:32:10,708 | INFO     | transferring file log.46809188._001783.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6849809097/log.46809188._001783.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-18 11:32:50] 2025-10-18 15:32:10,708 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6849809097/log.46809188._001783.job.log.tgz.1 /tmp/boinchome/slots/0/log.46809188._001783.job
[2025-10-18 11:32:50] 2025-10-18 15:32:10,731 | INFO     | adding to output.list: log.46809188._001783.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/b3/log.46809188._001783.job.log.tg
[2025-10-18 11:32:50] 2025-10-18 15:32:10,732 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 11:32:50] 2025-10-18 15:32:10,732 | INFO     | summary of transferred files:
[2025-10-18 11:32:50] 2025-10-18 15:32:10,732 | INFO     |  -- lfn=log.46809188._001783.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 11:32:50] 2025-10-18 15:32:10,732 | INFO     | stage-out finished correctly
[2025-10-18 11:32:50] 2025-10-18 15:32:11,092 | INFO     | time since job start (3514s) is within the limit (172800.0s)
[2025-10-18 11:32:50] 2025-10-18 15:32:12,649 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 11:32:50] 2025-10-18 15:32:13,081 | WARNING  | process 3696 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 11:32:50] 2025-10-18 15:32:13,081 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6849809097/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 11:32:50] 2025-10-18 15:32:13,097 | INFO     | time since job start (3516s) is within the limit (172800.0s)
[2025-10-18 11:32:50] 2025-10-18 15:32:13,168 | INFO     | job 6849809097 has state=finished
[2025-10-18 11:32:50] 2025-10-18 15:32:13,169 | INFO     | preparing for final server update for job 6849809097 in state='finished'
[2025-10-18 11:32:50] 2025-10-18 15:32:13,169 | INFO     | this job has now completed (state=finished)
[2025-10-18 11:32:50] 2025-10-18 15:32:13,169 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 11:32:50] 2025-10-18 15:32:13,169 | INFO     | log transfer has been attempted: DONE
[2025-10-18 11:32:50] 2025-10-18 15:32:13,170 | INFO     | job 6849809097 has finished - writing final server update
[2025-10-18 11:32:50] 2025-10-18 15:32:13,170 | INFO     | total number of processed events: 400 (read)
[2025-10-18 11:32:50] 2025-10-18 15:32:13,170 | INFO     | number of running child processes to parent process 3696: 1
[2025-10-18 11:32:50] 2025-10-18 15:32:13,171 | INFO     | maximum number of monitored processes: 6
[2025-10-18 11:32:50] 2025-10-18 15:32:13,171 | INFO     | executing command: lscpu
[2025-10-18 11:32:50] 2025-10-18 15:32:13,197 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 11:32:50] 2025-10-18 15:32:15,103 | INFO     | time since job start (3518s) is within the limit (172800.0s)
[2025-10-18 11:32:50] 2025-10-18 15:32:15,674 | INFO     | monitor loop #265: job 0:6849809097 is in state 'finished'
[2025-10-18 11:32:50] 2025-10-18 15:32:15,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 11:32:50] 2025-10-18 15:32:17,109 | INFO     | time since job start (3520s) is within the limit (172800.0s)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,177 | INFO     | monitor loop #266: job 0:6849809097 is in state 'finished'
[2025-10-18 11:32:50] 2025-10-18 15:32:18,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,245 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-18 11:32:50] 2025-10-18 15:32:18,250 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-18 11:32:50] 2025-10-18 15:32:18,251 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6849809097/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,252 | INFO     | extracted standard info from prmon json
[2025-10-18 11:32:50] 2025-10-18 15:32:18,252 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 11:32:50] 2025-10-18 15:32:18,252 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 11:32:50] 2025-10-18 15:32:18,252 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 11:32:50] 2025-10-18 15:32:18,253 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 11:32:50] 2025-10-18 15:32:18,254 | INFO     | fitting pss+swap vs Time
[2025-10-18 11:32:50] 2025-10-18 15:32:18,254 | INFO     | sum of square deviations: 41117050.0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,254 | INFO     | sum of deviations: -3721435540.0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | mean x: 1760799876.0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | mean y: 2840407.901960784
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | -- intersect: 159369897075.97498
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | intersect: 159369897075.97498
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | chi2: 0.08329345051859972
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | -- intersect: 159369897075.97498
[2025-10-18 11:32:50] 2025-10-18 15:32:18,255 | INFO     | current memory leak: -90.51 B/s (using 51 data points, chi2=0.08)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | could have reported an average CPU frequency of 1902 MHz (5 samples)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | ..............................
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | . Timing measurements:
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | . get job = 0 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | . initial setup = 2 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | . payload setup = 7 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | . stage-in = 0 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,256 | INFO     | . payload execution = 3485 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,257 | INFO     | . stage-out = 0 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,257 | INFO     | . log creation = 0 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,257 | INFO     | ..............................
[2025-10-18 11:32:50] 2025-10-18 15:32:18,338 | INFO     | 
[2025-10-18 11:32:50] 2025-10-18 15:32:18,338 | INFO     | job summary report
[2025-10-18 11:32:50] 2025-10-18 15:32:18,338 | INFO     | --------------------------------------------------
[2025-10-18 11:32:50] 2025-10-18 15:32:18,339 | INFO     | PanDA job id: 6849809097
[2025-10-18 11:32:50] 2025-10-18 15:32:18,339 | INFO     | task id: 46809188
[2025-10-18 11:32:50] 2025-10-18 15:32:18,339 | INFO     | errors: (none)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 11:32:50] 2025-10-18 15:32:18,339 | INFO     | pilot state: finished 
[2025-10-18 11:32:50] 2025-10-18 15:32:18,339 | INFO     | transexitcode: 0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,340 | INFO     | exeerrorcode: 0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,340 | INFO     | exeerrordiag: 
[2025-10-18 11:32:50] 2025-10-18 15:32:18,340 | INFO     | exitcode: 0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,340 | INFO     | exitmsg: OK
[2025-10-18 11:32:50] 2025-10-18 15:32:18,340 | INFO     | cpuconsumptiontime: 36950 s
[2025-10-18 11:32:50] 2025-10-18 15:32:18,340 | INFO     | nevents: 400
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | neventsw: 0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | pid: 3696
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | pgrp: 3696
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | corecount: 12
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | event service: False
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | sizes: {0: 2348780, 5: 2349042, 11: 2349098, 3495: 2374670, 3496: 2374669, 3497: 2383723, 3499: 2383907, 3504: 2384133}
[2025-10-18 11:32:50] 2025-10-18 15:32:18,341 | INFO     | --------------------------------------------------
[2025-10-18 11:32:50] 2025-10-18 15:32:18,342 | INFO     | 
[2025-10-18 11:32:50] 2025-10-18 15:32:18,342 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-18 11:32:50] 2025-10-18 15:32:18,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,367 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 11:32:50] 2025-10-18 15:32:18,371 | INFO     | job 6849809097 has completed (purged errors)
[2025-10-18 11:32:50] 2025-10-18 15:32:18,371 | INFO     | overall cleanup function is called
[2025-10-18 11:32:50] 2025-10-18 15:32:19,379 | INFO     | --- collectZombieJob: --- 10, [3696]
[2025-10-18 11:32:50] 2025-10-18 15:32:19,379 | INFO     | zombie collector waiting for pid 3696
[2025-10-18 11:32:50] 2025-10-18 15:32:19,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 11:32:50] 2025-10-18 15:32:19,379 | INFO     | collected zombie processes
[2025-10-18 11:32:50] 2025-10-18 15:32:19,379 | INFO     | will attempt to kill all subprocesses of pid=3696
[2025-10-18 11:32:50] 2025-10-18 15:32:19,471 | INFO     | process IDs to be killed: [3696] (in reverse order)
[2025-10-18 11:32:50] 2025-10-18 15:32:19,521 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 11:32:50] 2025-10-18 15:32:19,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 11:32:50] 2025-10-18 15:32:19,524 | INFO     | did not find any defunct processes belonging to 3696
[2025-10-18 11:32:50] 2025-10-18 15:32:19,527 | INFO     | did not find any defunct processes belonging to 3696
[2025-10-18 11:32:50] 2025-10-18 15:32:19,527 | INFO     | ready for new job
[2025-10-18 11:32:50] 2025-10-18 15:32:19,527 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 11:32:50] 2025-10-18 15:32:19,528 | INFO     | ***************************************
[2025-10-18 11:32:50] 2025-10-18 15:32:19,529 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 11:32:50] 2025-10-18 15:32:19,529 | INFO     | ***************************************
[2025-10-18 11:32:50] 2025-10-18 15:32:19,529 | INFO     | 
[2025-10-18 11:32:50] 2025-10-18 15:32:19,529 | INFO     | architecture information:
[2025-10-18 11:32:50] 2025-10-18 15:32:19,530 | INFO     | executing command: cat /etc/os-release
[2025-10-18 11:32:50] 2025-10-18 15:32:19,545 | INFO     | cat /etc/os-release:
[2025-10-18 11:32:50] NAME="CentOS Linux"
[2025-10-18 11:32:50] VERSION="7 (Core)"
[2025-10-18 11:32:50] ID="centos"
[2025-10-18 11:32:50] ID_LIKE="rhel fedora"
[2025-10-18 11:32:50] VERSION_ID="7"
[2025-10-18 11:32:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 11:32:50] ANSI_COLOR="0;31"
[2025-10-18 11:32:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 11:32:50] HOME_URL="https://www.centos.org/"
[2025-10-18 11:32:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 11:32:50] 
[2025-10-18 11:32:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 11:32:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 11:32:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 11:32:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 11:32:50] 
[2025-10-18 11:32:50] 2025-10-18 15:32:19,545 | INFO     | ***************************************
[2025-10-18 11:32:50] 2025-10-18 15:32:20,048 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-18 11:32:50] 2025-10-18 15:32:20,065 | INFO     | sufficient remaining disk space (29463937024 B)
[2025-10-18 11:32:50] 2025-10-18 15:32:20,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 11:32:50] 2025-10-18 15:32:20,065 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 11:32:50] 2025-10-18 15:32:20,066 | INFO     | update_server=False
[2025-10-18 11:32:50] 2025-10-18 15:32:20,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 11:32:50] 2025-10-18 15:32:20,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 11:32:50] 2025-10-18 15:32:20,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 11:32:50] 2025-10-18 15:32:20,067 | INFO     | aborting loop
[2025-10-18 11:32:50] 2025-10-18 15:32:20,207 | INFO     | all data control threads have been joined
[2025-10-18 11:32:50] 2025-10-18 15:32:20,697 | INFO     | all job control threads have been joined
[2025-10-18 11:32:50] 2025-10-18 15:32:21,071 | INFO     | [job] retrieve thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,072 | INFO     | [job] queue monitor thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,073 | INFO     | [job] job monitor thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,212 | INFO     | [data] control thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,258 | INFO     | all payload control threads have been joined
[2025-10-18 11:32:50] 2025-10-18 15:32:21,262 | INFO     | [payload] failed_post thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 11:32:50] 2025-10-18 15:32:21,371 | INFO     | [data] copytool_in thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,421 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,703 | INFO     | [job] control thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,833 | INFO     | [payload] validate_post thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,931 | INFO     | [job] validate thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:21,971 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:22,263 | INFO     | [payload] control thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:22,377 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:22,378 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:23,238 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 11:32:50] 2025-10-18 15:32:23,339 | INFO     | [data] copytool_out thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:27,243 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 11:32:50] 2025-10-18 15:32:42,350 | INFO     | [monitor] cgroup control has ended
[2025-10-18 11:32:50] 2025-10-18 15:32:42,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134610061120)>', '<ExcThread(monitor, started 140133860873984)>']
[2025-10-18 11:32:50] 2025-10-18 15:32:47,937 | INFO     | all workflow threads have been joined
[2025-10-18 11:32:50] 2025-10-18 15:32:47,937 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 11:32:50] 2025-10-18 15:32:47,937 | INFO     | traces error code: 0
[2025-10-18 11:32:50] 2025-10-18 15:32:47,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 11:32:50] 2025-10-18 15:32:50,311 | INFO     | PID=29626 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-18 11:32:50] 2025-10-18 15:32:50,312 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 11:32:50] 2025-10-18 15:32:50,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 11:32:50] 2025-10-18 15:32:50,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 11:32:50] 2025-10-18 15:32:50,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 11:32:50] 2025-10-18 15:32:50,312 | INFO     | [monitor] control thread has ended
[2025-10-18 11:32:50] 2025-10-18 15:32:50,407 [wrapper] ==== pilot stdout END ====
[2025-10-18 11:32:50] 2025-10-18 15:32:50,411 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 11:32:50] 2025-10-18 15:32:50,415 [wrapper] pilotpid: 29626
[2025-10-18 11:32:50] 2025-10-18 15:32:50,419 [wrapper] Pilot exit status: 0
[2025-10-18 11:32:50] 2025-10-18 15:32:50,435 [wrapper] pandaids: 6849809097
[2025-10-18 11:32:50] 2025-10-18 15:32:50,476 [wrapper] cleanup supervisor_pilot 28133 29627
[2025-10-18 11:32:50] 2025-10-18 15:32:50,480 [wrapper] Test setup, not cleaning
[2025-10-18 11:32:50] 2025-10-18 15:32:50,484 [wrapper] apfmon messages muted
[2025-10-18 11:32:50] 2025-10-18 15:32:50,488 [wrapper] ==== wrapper stdout END ====
[2025-10-18 11:32:50] 2025-10-18 15:32:50,492 [wrapper] ==== wrapper stderr END ====
[2025-10-18 11:32:50]  *** Error codes and diagnostics ***
[2025-10-18 11:32:50]     "exeErrorCode": 0,
[2025-10-18 11:32:50]     "exeErrorDiag": "",
[2025-10-18 11:32:50]     "pilotErrorCode": 0,
[2025-10-18 11:32:50]     "pilotErrorDiag": "",
[2025-10-18 11:32:50]  *** Listing of results directory ***
[2025-10-18 11:32:50] total 340980
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas    557409 Oct 18 02:05 pilot3.tar.gz
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas      5112 Oct 18 02:10 queuedata.json
[2025-10-18 11:32:50] -rwx------ 1 boincer umatlas     36292 Oct 18 02:11 runpilot2-wrapper.sh
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas       100 Oct 18 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 11:32:50] -rwxr-xr-x 1 boincer umatlas      7986 Oct 18 10:33 run_atlas
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas       105 Oct 18 10:33 job.xml
[2025-10-18 11:32:50] -rw-r--r-- 2 boincer umatlas 190894368 Oct 18 10:33 EVNT.46809186._000019.pool.root.1
[2025-10-18 11:32:50] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 10:33 start_atlas.sh
[2025-10-18 11:32:50] drwxrwx--x 2 boincer umatlas      4096 Oct 18 10:33 shared
[2025-10-18 11:32:50] -rw-r--r-- 2 boincer umatlas    569668 Oct 18 10:33 input.tar.gz
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas         0 Oct 18 10:33 boinc_lockfile
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas      2487 Oct 18 10:33 pandaJob.out
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas    976742 Oct 18 10:33 agis_schedconf.cvmfs.json
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas   1560740 Oct 18 10:33 agis_ddmendpoints.agis.ALL.json
[2025-10-18 11:32:50] drwx------ 5 boincer umatlas      4096 Oct 18 10:33 pilot3
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas      5952 Oct 18 11:30 init_data.xml
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas 152562455 Oct 18 11:31 HITS.46809188._001783.pool.root.1
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas       529 Oct 18 11:31 boinc_task_state.xml
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas      1050 Oct 18 11:32 memory_monitor_summary.json
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas    382090 Oct 18 11:32 log.46809188._001783.job.log.tgz.1
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas      7850 Oct 18 11:32 heartbeat.json
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas      8192 Oct 18 11:32 boinc_mmap_file
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas        27 Oct 18 11:32 wrapper_checkpoint.txt
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas       745 Oct 18 11:32 pilotlog.txt
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas        95 Oct 18 11:32 pilot_heartbeat.json
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas    521556 Oct 18 11:32 log.46809188._001783.job.log.1
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas       357 Oct 18 11:32 output.list
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas       620 Oct 18 11:32 runtime_log
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas    921600 Oct 18 11:32 result.tar.gz
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas      8705 Oct 18 11:32 runtime_log.err
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas       659 Oct 18 11:32 joVMDmoKFU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZJwNDmac6Bcm.diag
[2025-10-18 11:32:50] -rw-r--r-- 1 boincer umatlas     21950 Oct 18 11:32 stderr.txt
[2025-10-18 11:32:50] HITS file was successfully produced:
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas 152562455 Oct 18 11:31 shared/HITS.pool.root.1
[2025-10-18 11:32:50]  *** Contents of shared directory: ***
[2025-10-18 11:32:50] total 336892
[2025-10-18 11:32:50] -rw-r--r-- 2 boincer umatlas 190894368 Oct 18 10:33 ATLAS.root_0
[2025-10-18 11:32:50] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 10:33 start_atlas.sh
[2025-10-18 11:32:50] -rw-r--r-- 2 boincer umatlas    569668 Oct 18 10:33 input.tar.gz
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas 152562455 Oct 18 11:31 HITS.pool.root.1
[2025-10-18 11:32:50] -rw------- 1 boincer umatlas    921600 Oct 18 11:32 result.tar.gz
11:32:52 (25940): run_atlas exited; CPU time 36920.723418
11:32:52 (25940): called boinc_finish(0)

</stderr_txt>
]]>

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