Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:51:41 (2202066): wrapper (7.7.26015): starting
01:51:41 (2202066): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 01:51:41] Arguments: --nthreads 4
[2025-10-19 01:51:41] Threads: 4
[2025-10-19 01:51:41] Checking for CVMFS
[2025-10-19 01:51:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 01:51:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 01:51:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 01:51:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 01:51:41] 2.9.2.0 279843 4039 93048 151868 2 57 35406846 36864000 0 130560 0 3405501 99.988 173374 2146 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 01:51:41] CVMFS is ok
[2025-10-19 01:51:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 01:51:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 01:51:41] Further information can be found at the LHC@home message board.
[2025-10-19 01:51:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 01:51:41] Checking for apptainer binary...
[2025-10-19 01:51:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 01:51:41] Running /usr/bin/apptainer --version
[2025-10-19 01:51:41] apptainer version 1.4.1-1.1
[2025-10-19 01:51:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 01:51:41] atlasA237
[2025-10-19 01:51:41] apptainer works
[2025-10-19 01:51:41] Set ATHENA_PROC_NUMBER=4
[2025-10-19 01:51:41] Set ATHENA_CORE_NUMBER=4
[2025-10-19 01:51:41] Starting ATLAS job with PandaID=6848024201
[2025-10-19 01:51:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 03:12:10]  *** The last 200 lines of the pilot log: ***
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | job 6848024201 has completed (purged errors)
[2025-10-19 03:12:10] 2025-10-19 01:11:37,512 | INFO     | overall cleanup function is called
[2025-10-19 03:12:10] 2025-10-19 01:11:38,519 | INFO     | --- collectZombieJob: --- 10, [2212459]
[2025-10-19 03:12:10] 2025-10-19 01:11:38,519 | INFO     | zombie collector waiting for pid 2212459
[2025-10-19 03:12:10] 2025-10-19 01:11:38,519 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 03:12:10] 2025-10-19 01:11:38,519 | INFO     | collected zombie processes
[2025-10-19 03:12:10] 2025-10-19 01:11:38,520 | INFO     | will attempt to kill all subprocesses of pid=2212459
[2025-10-19 03:12:10] 2025-10-19 01:11:38,594 | INFO     | process IDs to be killed: [2212459] (in reverse order)
[2025-10-19 03:12:10] 2025-10-19 01:11:38,636 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 03:12:10] 2025-10-19 01:11:38,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 03:12:10] 2025-10-19 01:11:38,639 | INFO     | did not find any defunct processes belonging to 2212459
[2025-10-19 03:12:10] 2025-10-19 01:11:38,642 | INFO     | did not find any defunct processes belonging to 2212459
[2025-10-19 03:12:10] 2025-10-19 01:11:38,642 | INFO     | ready for new job
[2025-10-19 03:12:10] 2025-10-19 01:11:38,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 03:12:10] 2025-10-19 01:11:38,643 | INFO     | ***************************************
[2025-10-19 03:12:10] 2025-10-19 01:11:38,643 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 03:12:10] 2025-10-19 01:11:38,643 | INFO     | ***************************************
[2025-10-19 03:12:10] 2025-10-19 01:11:38,643 | INFO     | 
[2025-10-19 03:12:10] 2025-10-19 01:11:38,644 | INFO     | architecture information:
[2025-10-19 03:12:10] 2025-10-19 01:11:38,644 | INFO     | executing command: cat /etc/os-release
[2025-10-19 03:12:10] 2025-10-19 01:11:38,657 | INFO     | cat /etc/os-release:
[2025-10-19 03:12:10] NAME="CentOS Linux"
[2025-10-19 03:12:10] VERSION="7 (Core)"
[2025-10-19 03:12:10] ID="centos"
[2025-10-19 03:12:10] ID_LIKE="rhel fedora"
[2025-10-19 03:12:10] VERSION_ID="7"
[2025-10-19 03:12:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 03:12:10] ANSI_COLOR="0;31"
[2025-10-19 03:12:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 03:12:10] HOME_URL="https://www.centos.org/"
[2025-10-19 03:12:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 03:12:10] 
[2025-10-19 03:12:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 03:12:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 03:12:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 03:12:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 03:12:10] 
[2025-10-19 03:12:10] 2025-10-19 01:11:38,657 | INFO     | ***************************************
[2025-10-19 03:12:10] 2025-10-19 01:11:39,160 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 03:12:10] 2025-10-19 01:11:39,175 | INFO     | sufficient remaining disk space (324030955520 B)
[2025-10-19 03:12:10] 2025-10-19 01:11:39,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 03:12:10] 2025-10-19 01:11:39,176 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 03:12:10] 2025-10-19 01:11:39,176 | INFO     | update_server=False
[2025-10-19 03:12:10] 2025-10-19 01:11:39,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 03:12:10] 2025-10-19 01:11:39,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 03:12:10] 2025-10-19 01:11:39,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 03:12:10] 2025-10-19 01:11:39,540 | INFO     | all payload control threads have been joined
[2025-10-19 03:12:10] 2025-10-19 01:11:39,667 | INFO     | all job control threads have been joined
[2025-10-19 03:12:10] 2025-10-19 01:11:40,038 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 03:12:10] 2025-10-19 01:11:40,038 | INFO     | aborting loop
[2025-10-19 03:12:10] 2025-10-19 01:11:40,180 | INFO     | [job] retrieve thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:40,198 | INFO     | all data control threads have been joined
[2025-10-19 03:12:10] 2025-10-19 01:11:40,241 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:40,364 | INFO     | [data] copytool_in thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:40,541 | INFO     | [payload] control thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:40,673 | INFO     | [job] control thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:40,861 | INFO     | [payload] failed_post thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:40,880 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:41,044 | INFO     | [job] job monitor thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:41,204 | INFO     | [data] control thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:41,300 | INFO     | [data] copytool_out thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:41,521 | INFO     | [payload] validate_post thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:41,563 | INFO     | [job] validate thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:41,603 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:42,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 03:12:10] 2025-10-19 01:11:43,024 | INFO     | [job] queue monitor thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:43,183 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:49,506 | INFO     | job.realtimelogging is not enabled
[2025-10-19 03:12:10] 2025-10-19 01:11:50,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 03:12:10] 2025-10-19 01:11:54,937 | INFO     | [monitor] cgroup control has ended
[2025-10-19 03:12:10] 2025-10-19 01:11:56,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355327375168)>', '<ExcThread(monitor, started 140354565175040)>']
[2025-10-19 03:12:10] 2025-10-19 01:12:01,543 | INFO     | all workflow threads have been joined
[2025-10-19 03:12:10] 2025-10-19 01:12:01,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 03:12:10] 2025-10-19 01:12:01,544 | INFO     | traces error code: 0
[2025-10-19 03:12:10] 2025-10-19 01:12:01,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 03:12:10] 2025-10-19 01:12:09,937 | INFO     | PID=2205864 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 03:12:10] 2025-10-19 01:12:09,937 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 03:12:10] 2025-10-19 01:12:09,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 03:12:10] 2025-10-19 01:12:09,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 03:12:10] 2025-10-19 01:12:09,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 03:12:10] 2025-10-19 01:12:09,938 | INFO     | [monitor] control thread has ended
[2025-10-19 03:12:10] 2025-10-19 01:12:10,006 [wrapper] ==== pilot stdout END ====
[2025-10-19 03:12:10] 2025-10-19 01:12:10,009 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 03:12:10] 2025-10-19 01:12:10,013 [wrapper] pilotpid: 2205864
[2025-10-19 03:12:10] 2025-10-19 01:12:10,016 [wrapper] Pilot exit status: 0
[2025-10-19 03:12:10] 2025-10-19 01:12:10,026 [wrapper] pandaids: 6848024201
[2025-10-19 03:12:10] 2025-10-19 01:12:10,053 [wrapper] cleanup supervisor_pilot 2233646 2205865
[2025-10-19 03:12:10] 2025-10-19 01:12:10,057 [wrapper] Test setup, not cleaning
[2025-10-19 03:12:10] 2025-10-19 01:12:10,060 [wrapper] apfmon messages muted
[2025-10-19 03:12:10] 2025-10-19 01:12:10,063 [wrapper] ==== wrapper stdout END ====
[2025-10-19 03:12:10] 2025-10-19 01:12:10,067 [wrapper] ==== wrapper stderr END ====
[2025-10-19 03:12:10]  *** Error codes and diagnostics ***
[2025-10-19 03:12:10]     "exeErrorCode": 0,
[2025-10-19 03:12:10]     "exeErrorDiag": "",
[2025-10-19 03:12:10]     "pilotErrorCode": 0,
[2025-10-19 03:12:10]     "pilotErrorDiag": "",
[2025-10-19 03:12:10]  *** Listing of results directory ***
[2025-10-19 03:12:10] total 437880
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc    557409 Oct 18 09:16 pilot3.tar.gz
[2025-10-19 03:12:10] -rwx------ 1 boinc boinc     36292 Oct 18 09:28 runpilot2-wrapper.sh
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc      5112 Oct 18 09:28 queuedata.json
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc       100 Oct 19 01:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 03:12:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 01:51 run_atlas
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc       105 Oct 19 01:51 job.xml
[2025-10-19 03:12:10] -rw-r--r-- 2 boinc boinc 229631047 Oct 19 01:51 EVNT.46771634._001708.pool.root.1
[2025-10-19 03:12:10] drwxrwx--x 2 boinc boinc      4096 Oct 19 01:51 shared
[2025-10-19 03:12:10] -rw-r--r-- 2 boinc boinc    569674 Oct 19 01:51 input.tar.gz
[2025-10-19 03:12:10] -rw-r--r-- 2 boinc boinc     15120 Oct 19 01:51 start_atlas.sh
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc         0 Oct 19 01:51 boinc_setup_complete
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc      6370 Oct 19 01:51 init_data.xml
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc         0 Oct 19 01:51 boinc_lockfile
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc      2558 Oct 19 01:51 pandaJob.out
[2025-10-19 03:12:10] -rw------- 1 boinc boinc    976742 Oct 19 01:51 agis_schedconf.cvmfs.json
[2025-10-19 03:12:10] -rw------- 1 boinc boinc   1560740 Oct 19 01:51 agis_ddmendpoints.agis.ALL.json
[2025-10-19 03:12:10] drwx------ 5 boinc boinc      4096 Oct 19 01:51 pilot3
[2025-10-19 03:12:10] -rw------- 1 boinc boinc 212915347 Oct 19 03:11 HITS.46771637._039081.pool.root.1
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc       529 Oct 19 03:11 boinc_task_state.xml
[2025-10-19 03:12:10] -rw------- 1 boinc boinc        95 Oct 19 03:11 pilot_heartbeat.json
[2025-10-19 03:12:10] -rw------- 1 boinc boinc      1022 Oct 19 03:11 memory_monitor_summary.json
[2025-10-19 03:12:10] -rw------- 1 boinc boinc    272017 Oct 19 03:11 log.46771637._039081.job.log.tgz.1
[2025-10-19 03:12:10] -rw------- 1 boinc boinc      7772 Oct 19 03:11 heartbeat.json
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc      8192 Oct 19 03:11 boinc_mmap_file
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc        27 Oct 19 03:11 wrapper_checkpoint.txt
[2025-10-19 03:12:10] -rw------- 1 boinc boinc       747 Oct 19 03:12 pilotlog.txt
[2025-10-19 03:12:10] -rw------- 1 boinc boinc    703320 Oct 19 03:12 log.46771637._039081.job.log.1
[2025-10-19 03:12:10] -rw------- 1 boinc boinc       357 Oct 19 03:12 output.list
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc       620 Oct 19 03:12 runtime_log
[2025-10-19 03:12:10] -rw------- 1 boinc boinc    993280 Oct 19 03:12 result.tar.gz
[2025-10-19 03:12:10] -rw------- 1 boinc boinc       661 Oct 19 03:12 xijMDmiXGU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpjbMDm1xHxNo.diag
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc      8792 Oct 19 03:12 runtime_log.err
[2025-10-19 03:12:10] -rw-r--r-- 1 boinc boinc     12237 Oct 19 03:12 stderr.txt
[2025-10-19 03:12:10] HITS file was successfully produced:
[2025-10-19 03:12:10] -rw------- 1 boinc boinc 212915347 Oct 19 03:11 shared/HITS.pool.root.1
[2025-10-19 03:12:10]  *** Contents of shared directory: ***
[2025-10-19 03:12:10] total 433736
[2025-10-19 03:12:10] -rw-r--r-- 2 boinc boinc 229631047 Oct 19 01:51 ATLAS.root_0
[2025-10-19 03:12:10] -rw-r--r-- 2 boinc boinc    569674 Oct 19 01:51 input.tar.gz
[2025-10-19 03:12:10] -rw-r--r-- 2 boinc boinc     15120 Oct 19 01:51 start_atlas.sh
[2025-10-19 03:12:10] -rw------- 1 boinc boinc 212915347 Oct 19 03:11 HITS.pool.root.1
[2025-10-19 03:12:10] -rw------- 1 boinc boinc    993280 Oct 19 03:12 result.tar.gz
03:12:11 (2202066): run_atlas exited; CPU time 18090.137701
03:12:11 (2202066): called boinc_finish(0)

</stderr_txt>
]]>

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