Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:05:14 (31330): wrapper (7.7.26015): starting
08:05:14 (31330): wrapper: running run_atlas (--nthreads 12)
[2025-10-18 08:05:14] Arguments: --nthreads 12
[2025-10-18 08:05:14] Threads: 12
[2025-10-18 08:05:14] Checking for CVMFS
[2025-10-18 08:05:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 08:05:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 08:05:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 08:05:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 08:05:14] 2.11.2.0 2991 231452 97120 151850 2 57 18596503 20275200 1 130560 1 114959113 99.984 13756446 12674 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 08:05:14] CVMFS is ok
[2025-10-18 08:05:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 08:05:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 08:05:15] Further information can be found at the LHC@home message board.
[2025-10-18 08:05:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 08:05:15] Checking for apptainer binary...
[2025-10-18 08:05:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 08:05:15] Running /usr/bin/apptainer --version
[2025-10-18 08:05:15] apptainer version 1.3.2-1.el7
[2025-10-18 08:05:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 08:05:16] c-205-32.aglt2.org
[2025-10-18 08:05:16] apptainer works
[2025-10-18 08:05:16] Set ATHENA_PROC_NUMBER=12
[2025-10-18 08:05:16] Set ATHENA_CORE_NUMBER=12
[2025-10-18 08:05:16] Starting ATLAS job with PandaID=6848023800
[2025-10-18 08:05:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 09:26:44]  *** The last 200 lines of the pilot log: ***
[2025-10-18 09:26:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-18 09:26:44]  replicas=None
[2025-10-18 09:26:44]  scope=mc23_13p6TeV
[2025-10-18 09:26:44]  status=None
[2025-10-18 09:26:44]  status_code=0
[2025-10-18 09:26:44]  storage_token=
[2025-10-18 09:26:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6848023800/log.46771637._038728.job.log.tgz.1
[2025-10-18 09:26:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/7a/log.46771637._038728.job.log.tgz.1
[2025-10-18 09:26:44]  workdir=None
[2025-10-18 09:26:44] ]
[2025-10-18 09:26:44] 2025-10-18 13:25:38,139 | INFO     | transferring file log.46771637._038728.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6848023800/log.46771637._038728.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-18 09:26:44] 2025-10-18 13:25:38,139 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6848023800/log.46771637._038728.job.log.tgz.1 /tmp/boinchome/slots/0/log.46771637._038728.job
[2025-10-18 09:26:44] 2025-10-18 13:25:38,160 | INFO     | adding to output.list: log.46771637._038728.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/7a/log.46771637._038728.job.log.tg
[2025-10-18 09:26:44] 2025-10-18 13:25:38,161 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-18 09:26:44] 2025-10-18 13:25:38,161 | INFO     | summary of transferred files:
[2025-10-18 09:26:44] 2025-10-18 13:25:38,162 | INFO     |  -- lfn=log.46771637._038728.job.log.tgz.1, status_code=0, status=transferred
[2025-10-18 09:26:44] 2025-10-18 13:25:38,162 | INFO     | stage-out finished correctly
[2025-10-18 09:26:44] 2025-10-18 13:25:40,056 | INFO     | time since job start (4809s) is within the limit (172800.0s)
[2025-10-18 09:26:44] 2025-10-18 13:25:40,576 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-18 09:26:44] 2025-10-18 13:25:42,061 | INFO     | time since job start (4811s) is within the limit (172800.0s)
[2025-10-18 09:26:44] 2025-10-18 13:25:42,832 | INFO     | job 6848023800 has state=finished
[2025-10-18 09:26:44] 2025-10-18 13:25:42,832 | INFO     | preparing for final server update for job 6848023800 in state='finished'
[2025-10-18 09:26:44] 2025-10-18 13:25:42,833 | INFO     | this job has now completed (state=finished)
[2025-10-18 09:26:44] 2025-10-18 13:25:42,833 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-18 09:26:44] 2025-10-18 13:25:42,833 | INFO     | log transfer has been attempted: DONE
[2025-10-18 09:26:44] 2025-10-18 13:25:42,833 | INFO     | job 6848023800 has finished - writing final server update
[2025-10-18 09:26:44] 2025-10-18 13:25:42,833 | INFO     | total number of processed events: 400 (read)
[2025-10-18 09:26:44] 2025-10-18 13:25:42,834 | INFO     | executing command: lscpu
[2025-10-18 09:26:44] 2025-10-18 13:25:42,862 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-18 09:26:44] 2025-10-18 13:25:43,460 | WARNING  | process 9476 can no longer be monitored (due to stat problems) - aborting
[2025-10-18 09:26:44] 2025-10-18 13:25:43,461 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6848023800/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 09:26:44] 2025-10-18 13:25:43,551 | INFO     | number of running child processes to parent process 9476: 1
[2025-10-18 09:26:44] 2025-10-18 13:25:43,551 | INFO     | maximum number of monitored processes: 6
[2025-10-18 09:26:44] 2025-10-18 13:25:44,067 | INFO     | time since job start (4813s) is within the limit (172800.0s)
[2025-10-18 09:26:44] 2025-10-18 13:25:46,054 | INFO     | monitor loop #358: job 0:6848023800 is in state 'finished'
[2025-10-18 09:26:44] 2025-10-18 13:25:46,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-18 09:26:44] 2025-10-18 13:25:46,072 | INFO     | time since job start (4815s) is within the limit (172800.0s)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,423 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-18 09:26:44] 2025-10-18 13:25:47,427 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-18 09:26:44] 2025-10-18 13:25:47,429 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6848023800/memory_monitor_summary.json (trf name=prmon)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,429 | INFO     | extracted standard info from prmon json
[2025-10-18 09:26:44] 2025-10-18 13:25:47,430 | INFO     | extracted standard memory fields from prmon json
[2025-10-18 09:26:44] 2025-10-18 13:25:47,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 09:26:44] 2025-10-18 13:25:47,430 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 09:26:44] 2025-10-18 13:25:47,430 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 09:26:44] 2025-10-18 13:25:47,432 | INFO     | fitting pss+swap vs Time
[2025-10-18 09:26:44] 2025-10-18 13:25:47,432 | INFO     | sum of square deviations: 115715658.0
[2025-10-18 09:26:44] 2025-10-18 13:25:47,432 | INFO     | sum of deviations: -1647320433.0000002
[2025-10-18 09:26:44] 2025-10-18 13:25:47,432 | INFO     | mean x: 1760791629.5
[2025-10-18 09:26:44] 2025-10-18 13:25:47,432 | INFO     | mean y: 2693144.0833333335
[2025-10-18 09:26:44] 2025-10-18 13:25:47,433 | INFO     | -- intersect: 25069206005.55551
[2025-10-18 09:26:44] 2025-10-18 13:25:47,433 | INFO     | intersect: 25069206005.55551
[2025-10-18 09:26:44] 2025-10-18 13:25:47,433 | INFO     | chi2: 0.028301055421669222
[2025-10-18 09:26:44] 2025-10-18 13:25:47,433 | INFO     | -- intersect: 25069206005.55551
[2025-10-18 09:26:44] 2025-10-18 13:25:47,433 | INFO     | current memory leak: -14.24 B/s (using 72 data points, chi2=0.03)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,433 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | ..............................
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . Timing measurements:
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . get job = 0 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . initial setup = 2 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . payload setup = 6 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . stage-in = 0 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . payload execution = 4780 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,434 | INFO     | . stage-out = 0 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,435 | INFO     | . log creation = 0 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,435 | INFO     | ..............................
[2025-10-18 09:26:44] 2025-10-18 13:25:47,516 | INFO     | 
[2025-10-18 09:26:44] 2025-10-18 13:25:47,516 | INFO     | job summary report
[2025-10-18 09:26:44] 2025-10-18 13:25:47,516 | INFO     | --------------------------------------------------
[2025-10-18 09:26:44] 2025-10-18 13:25:47,516 | INFO     | PanDA job id: 6848023800
[2025-10-18 09:26:44] 2025-10-18 13:25:47,516 | INFO     | task id: 46771637
[2025-10-18 09:26:44] 2025-10-18 13:25:47,517 | INFO     | errors: (none)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,517 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 09:26:44] 2025-10-18 13:25:47,517 | INFO     | pilot state: finished 
[2025-10-18 09:26:44] 2025-10-18 13:25:47,517 | INFO     | transexitcode: 0
[2025-10-18 09:26:44] 2025-10-18 13:25:47,517 | INFO     | exeerrorcode: 0
[2025-10-18 09:26:44] 2025-10-18 13:25:47,517 | INFO     | exeerrordiag: 
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | exitcode: 0
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | exitmsg: OK
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | cpuconsumptiontime: 52362 s
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | nevents: 400
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | neventsw: 0
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | pid: 9476
[2025-10-18 09:26:44] 2025-10-18 13:25:47,518 | INFO     | pgrp: 9476
[2025-10-18 09:26:44] 2025-10-18 13:25:47,519 | INFO     | corecount: 12
[2025-10-18 09:26:44] 2025-10-18 13:25:47,519 | INFO     | event service: False
[2025-10-18 09:26:44] 2025-10-18 13:25:47,519 | INFO     | sizes: {0: 2348758, 1: 2348957, 5: 2349219, 11: 2349275, 4790: 2375467, 4791: 2384465, 4794: 2384649, 4801: 2384843}
[2025-10-18 09:26:44] 2025-10-18 13:25:47,519 | INFO     | --------------------------------------------------
[2025-10-18 09:26:44] 2025-10-18 13:25:47,519 | INFO     | 
[2025-10-18 09:26:44] 2025-10-18 13:25:47,519 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-18 09:26:44] 2025-10-18 13:25:47,542 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,543 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,543 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,543 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,543 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,543 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,543 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,544 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,544 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,544 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,545 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,545 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,545 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,545 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,545 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,545 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,546 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,546 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 09:26:44] 2025-10-18 13:25:47,546 | INFO     | job 6848023800 has completed (purged errors)
[2025-10-18 09:26:44] 2025-10-18 13:25:47,546 | INFO     | overall cleanup function is called
[2025-10-18 09:26:44] 2025-10-18 13:25:48,554 | INFO     | --- collectZombieJob: --- 10, [9476]
[2025-10-18 09:26:44] 2025-10-18 13:25:48,554 | INFO     | zombie collector waiting for pid 9476
[2025-10-18 09:26:44] 2025-10-18 13:25:48,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 09:26:44] 2025-10-18 13:25:48,555 | INFO     | collected zombie processes
[2025-10-18 09:26:44] 2025-10-18 13:25:48,555 | INFO     | will attempt to kill all subprocesses of pid=9476
[2025-10-18 09:26:44] 2025-10-18 13:25:48,645 | INFO     | process IDs to be killed: [9476] (in reverse order)
[2025-10-18 09:26:44] 2025-10-18 13:25:48,694 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 09:26:44] 2025-10-18 13:25:48,695 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 09:26:44] 2025-10-18 13:25:48,698 | INFO     | did not find any defunct processes belonging to 9476
[2025-10-18 09:26:44] 2025-10-18 13:25:48,700 | INFO     | did not find any defunct processes belonging to 9476
[2025-10-18 09:26:44] 2025-10-18 13:25:48,700 | INFO     | ready for new job
[2025-10-18 09:26:44] 2025-10-18 13:25:48,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 09:26:44] 2025-10-18 13:25:48,702 | INFO     | ***************************************
[2025-10-18 09:26:44] 2025-10-18 13:25:48,702 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 09:26:44] 2025-10-18 13:25:48,702 | INFO     | ***************************************
[2025-10-18 09:26:44] 2025-10-18 13:25:48,702 | INFO     | 
[2025-10-18 09:26:44] 2025-10-18 13:25:48,702 | INFO     | architecture information:
[2025-10-18 09:26:44] 2025-10-18 13:25:48,703 | INFO     | executing command: cat /etc/os-release
[2025-10-18 09:26:44] 2025-10-18 13:25:48,718 | INFO     | cat /etc/os-release:
[2025-10-18 09:26:44] NAME="CentOS Linux"
[2025-10-18 09:26:44] VERSION="7 (Core)"
[2025-10-18 09:26:44] ID="centos"
[2025-10-18 09:26:44] ID_LIKE="rhel fedora"
[2025-10-18 09:26:44] VERSION_ID="7"
[2025-10-18 09:26:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 09:26:44] ANSI_COLOR="0;31"
[2025-10-18 09:26:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 09:26:44] HOME_URL="https://www.centos.org/"
[2025-10-18 09:26:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 09:26:44] 
[2025-10-18 09:26:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 09:26:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 09:26:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 09:26:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 09:26:44] 
[2025-10-18 09:26:44] 2025-10-18 13:25:48,718 | INFO     | ***************************************
[2025-10-18 09:26:44] 2025-10-18 13:25:49,221 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-18 09:26:44] 2025-10-18 13:25:49,237 | INFO     | sufficient remaining disk space (29340205056 B)
[2025-10-18 09:26:44] 2025-10-18 13:25:49,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 09:26:44] 2025-10-18 13:25:49,238 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 09:26:44] 2025-10-18 13:25:49,238 | INFO     | update_server=False
[2025-10-18 09:26:44] 2025-10-18 13:25:49,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 09:26:44] 2025-10-18 13:25:49,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 09:26:44] 2025-10-18 13:25:49,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 09:26:44] 2025-10-18 13:25:49,370 | INFO     | all job control threads have been joined
[2025-10-18 09:26:44] 2025-10-18 13:25:49,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 09:26:44] 2025-10-18 13:25:49,563 | INFO     | aborting loop
[2025-10-18 09:26:44] 2025-10-18 13:25:50,129 | INFO     | all payload control threads have been joined
[2025-10-18 09:26:44] 2025-10-18 13:25:50,240 | INFO     | [job] retrieve thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,244 | INFO     | [job] queue monitor thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,247 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,296 | INFO     | [payload] failed_post thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,298 | INFO     | all data control threads have been joined
[2025-10-18 09:26:44] 2025-10-18 13:25:50,332 | INFO     | [job] validate thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,345 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,375 | INFO     | [job] control thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,568 | INFO     | [job] job monitor thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,884 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,895 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:50,981 | INFO     | [data] copytool_in thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:51,134 | INFO     | [payload] control thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:51,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 09:26:44] 2025-10-18 13:25:51,235 | INFO     | [payload] validate_post thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:51,244 | INFO     | [data] copytool_out thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:51,303 | INFO     | [data] control thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:25:55,167 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 09:26:44] 2025-10-18 13:26:19,275 | INFO     | PID=2700 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-18 09:26:44] 2025-10-18 13:26:19,276 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 09:26:44] 2025-10-18 13:26:19,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 09:26:44] 2025-10-18 13:26:19,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 09:26:44] 2025-10-18 13:26:37,995 | INFO     | [monitor] cgroup control has ended
[2025-10-18 09:26:44] 2025-10-18 13:26:39,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140387914467136)>', '<ExcThread(monitor, started 140387607881472)>']
[2025-10-18 09:26:44] 2025-10-18 13:26:40,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 09:26:44] 2025-10-18 13:26:40,380 | INFO     | [monitor] control thread has ended
[2025-10-18 09:26:44] 2025-10-18 13:26:44,548 | INFO     | all workflow threads have been joined
[2025-10-18 09:26:44] 2025-10-18 13:26:44,548 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 09:26:44] 2025-10-18 13:26:44,549 | INFO     | traces error code: 0
[2025-10-18 09:26:44] 2025-10-18 13:26:44,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 09:26:44] 2025-10-18 13:26:44,638 [wrapper] ==== pilot stdout END ====
[2025-10-18 09:26:44] 2025-10-18 13:26:44,641 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 09:26:44] 2025-10-18 13:26:44,645 [wrapper] pilotpid: 2700
[2025-10-18 09:26:44] 2025-10-18 13:26:44,649 [wrapper] Pilot exit status: 0
[2025-10-18 09:26:44] 2025-10-18 13:26:44,662 [wrapper] pandaids: 6848023800
[2025-10-18 09:26:44] 2025-10-18 13:26:44,707 [wrapper] cleanup supervisor_pilot 30353 2701
[2025-10-18 09:26:44] 2025-10-18 13:26:44,711 [wrapper] Test setup, not cleaning
[2025-10-18 09:26:44] 2025-10-18 13:26:44,715 [wrapper] apfmon messages muted
[2025-10-18 09:26:44] 2025-10-18 13:26:44,718 [wrapper] ==== wrapper stdout END ====
[2025-10-18 09:26:44] 2025-10-18 13:26:44,722 [wrapper] ==== wrapper stderr END ====
[2025-10-18 09:26:44]  *** Error codes and diagnostics ***
[2025-10-18 09:26:44]     "exeErrorCode": 0,
[2025-10-18 09:26:44]     "exeErrorDiag": "",
[2025-10-18 09:26:44]     "pilotErrorCode": 0,
[2025-10-18 09:26:44]     "pilotErrorDiag": "",
[2025-10-18 09:26:44]  *** Listing of results directory ***
[2025-10-18 09:26:44] total 427404
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas    557409 Oct 18 02:39 pilot3.tar.gz
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas      5112 Oct 18 02:49 queuedata.json
[2025-10-18 09:26:44] -rwx------ 1 boincer umatlas     36292 Oct 18 02:50 runpilot2-wrapper.sh
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas       100 Oct 18 08:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 09:26:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct 18 08:05 run_atlas
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas       105 Oct 18 08:05 job.xml
[2025-10-18 09:26:44] -rw-r--r-- 2 boincer umatlas 226298530 Oct 18 08:05 EVNT.46771634._001688.pool.root.1
[2025-10-18 09:26:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 08:05 start_atlas.sh
[2025-10-18 09:26:44] drwxrwx--x 2 boincer umatlas      4096 Oct 18 08:05 shared
[2025-10-18 09:26:44] -rw-r--r-- 2 boincer umatlas    569678 Oct 18 08:05 input.tar.gz
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas         0 Oct 18 08:05 boinc_lockfile
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas      2558 Oct 18 08:05 pandaJob.out
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas    976750 Oct 18 08:05 agis_schedconf.cvmfs.json
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas   1560740 Oct 18 08:05 agis_ddmendpoints.agis.ALL.json
[2025-10-18 09:26:44] drwx------ 5 boincer umatlas      4096 Oct 18 08:05 pilot3
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas      5953 Oct 18 09:21 init_data.xml
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas 205289339 Oct 18 09:25 HITS.46771637._038728.pool.root.1
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas       529 Oct 18 09:25 boinc_task_state.xml
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas      1050 Oct 18 09:25 memory_monitor_summary.json
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas        95 Oct 18 09:25 pilot_heartbeat.json
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas    391692 Oct 18 09:25 log.46771637._038728.job.log.tgz.1
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas      7850 Oct 18 09:25 heartbeat.json
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas        27 Oct 18 09:26 wrapper_checkpoint.txt
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas      4745 Oct 18 09:26 pilotlog.txt
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas      8192 Oct 18 09:26 boinc_mmap_file
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas    693418 Oct 18 09:26 log.46771637._038728.job.log.1
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas       357 Oct 18 09:26 output.list
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas       620 Oct 18 09:26 runtime_log
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas   1105920 Oct 18 09:26 result.tar.gz
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas      8705 Oct 18 09:26 runtime_log.err
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas       659 Oct 18 09:26 ikcMDmawFU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9PwNDmXxjvFo.diag
[2025-10-18 09:26:44] -rw-r--r-- 1 boincer umatlas     21881 Oct 18 09:26 stderr.txt
[2025-10-18 09:26:44] HITS file was successfully produced:
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas 205289339 Oct 18 09:25 shared/HITS.pool.root.1
[2025-10-18 09:26:44]  *** Contents of shared directory: ***
[2025-10-18 09:26:44] total 423136
[2025-10-18 09:26:44] -rw-r--r-- 2 boincer umatlas 226298530 Oct 18 08:05 ATLAS.root_0
[2025-10-18 09:26:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 18 08:05 start_atlas.sh
[2025-10-18 09:26:44] -rw-r--r-- 2 boincer umatlas    569678 Oct 18 08:05 input.tar.gz
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas 205289339 Oct 18 09:25 HITS.pool.root.1
[2025-10-18 09:26:44] -rw------- 1 boincer umatlas   1105920 Oct 18 09:26 result.tar.gz
09:26:46 (31330): run_atlas exited; CPU time 52331.456848
09:26:46 (31330): called boinc_finish(0)

</stderr_txt>
]]>

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