Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:31:27 (3661022): wrapper (7.7.26015): starting
23:31:27 (3661022): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 23:31:27] Arguments: --nthreads 2
[2025-10-18 23:31:27] Threads: 2
[2025-10-18 23:31:27] Checking for CVMFS
[2025-10-18 23:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 23:31:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 23:31:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 23:31:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 23:31:28] 2.9.2.0 2746064 4160 62300 151865 1 56 28852021 36864000 0 130560 0 2376614 99.987 151374 2866 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 23:31:28] CVMFS is ok
[2025-10-18 23:31:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 23:31:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 23:31:28] Further information can be found at the LHC@home message board.
[2025-10-18 23:31:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 23:31:28] Checking for apptainer binary...
[2025-10-18 23:31:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 23:31:28] Running /usr/bin/apptainer --version
[2025-10-18 23:31:28] apptainer version 1.4.1-1.1
[2025-10-18 23:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 23:31:28] thA337
[2025-10-18 23:31:28] apptainer works
[2025-10-18 23:31:28] Set ATHENA_PROC_NUMBER=2
[2025-10-18 23:31:28] Set ATHENA_CORE_NUMBER=2
[2025-10-18 23:31:28] Starting ATLAS job with PandaID=6848023809
[2025-10-18 23:31:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 01:47:20]  *** The last 200 lines of the pilot log: ***
[2025-10-19 01:47:20] 2025-10-18 23:46:49,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 01:47:20] 2025-10-18 23:46:49,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 01:47:20] 2025-10-18 23:46:49,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 01:47:20] 2025-10-18 23:46:49,688 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 01:47:20] 2025-10-18 23:46:49,688 | INFO     | job 6848023809 has completed (purged errors)
[2025-10-19 01:47:20] 2025-10-18 23:46:49,688 | INFO     | overall cleanup function is called
[2025-10-19 01:47:20] 2025-10-18 23:46:50,694 | INFO     | --- collectZombieJob: --- 10, [3671146]
[2025-10-19 01:47:20] 2025-10-18 23:46:50,694 | INFO     | zombie collector waiting for pid 3671146
[2025-10-19 01:47:20] 2025-10-18 23:46:50,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 01:47:20] 2025-10-18 23:46:50,695 | INFO     | collected zombie processes
[2025-10-19 01:47:20] 2025-10-18 23:46:50,695 | INFO     | will attempt to kill all subprocesses of pid=3671146
[2025-10-19 01:47:20] 2025-10-18 23:46:50,728 | INFO     | process IDs to be killed: [3671146] (in reverse order)
[2025-10-19 01:47:20] 2025-10-18 23:46:50,748 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 01:47:20] 2025-10-18 23:46:50,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 01:47:20] 2025-10-18 23:46:50,749 | INFO     | did not find any defunct processes belonging to 3671146
[2025-10-19 01:47:20] 2025-10-18 23:46:50,749 | INFO     | did not find any defunct processes belonging to 3671146
[2025-10-19 01:47:20] 2025-10-18 23:46:50,749 | INFO     | ready for new job
[2025-10-19 01:47:20] 2025-10-18 23:46:50,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 01:47:20] 2025-10-18 23:46:50,750 | INFO     | ***************************************
[2025-10-19 01:47:20] 2025-10-18 23:46:50,750 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 01:47:20] 2025-10-18 23:46:50,750 | INFO     | ***************************************
[2025-10-19 01:47:20] 2025-10-18 23:46:50,750 | INFO     | 
[2025-10-19 01:47:20] 2025-10-18 23:46:50,750 | INFO     | architecture information:
[2025-10-19 01:47:20] 2025-10-18 23:46:50,750 | INFO     | executing command: cat /etc/os-release
[2025-10-19 01:47:20] 2025-10-18 23:46:50,758 | INFO     | cat /etc/os-release:
[2025-10-19 01:47:20] NAME="CentOS Linux"
[2025-10-19 01:47:20] VERSION="7 (Core)"
[2025-10-19 01:47:20] ID="centos"
[2025-10-19 01:47:20] ID_LIKE="rhel fedora"
[2025-10-19 01:47:20] VERSION_ID="7"
[2025-10-19 01:47:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 01:47:20] ANSI_COLOR="0;31"
[2025-10-19 01:47:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 01:47:20] HOME_URL="https://www.centos.org/"
[2025-10-19 01:47:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 01:47:20] 
[2025-10-19 01:47:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 01:47:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 01:47:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 01:47:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 01:47:20] 
[2025-10-19 01:47:20] 2025-10-18 23:46:50,758 | INFO     | ***************************************
[2025-10-19 01:47:20] 2025-10-18 23:46:51,261 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 01:47:20] 2025-10-18 23:46:51,290 | INFO     | sufficient remaining disk space (482292531200 B)
[2025-10-19 01:47:20] 2025-10-18 23:46:51,291 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 01:47:20] 2025-10-18 23:46:51,291 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 01:47:20] 2025-10-18 23:46:51,291 | INFO     | update_server=False
[2025-10-19 01:47:20] 2025-10-18 23:46:51,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 01:47:20] 2025-10-18 23:46:51,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 01:47:20] 2025-10-18 23:46:51,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 01:47:20] 2025-10-18 23:46:51,784 | INFO     | all payload control threads have been joined
[2025-10-19 01:47:20] 2025-10-18 23:46:52,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 01:47:20] 2025-10-18 23:46:52,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 01:47:20] 2025-10-18 23:46:52,181 | INFO     | aborting loop
[2025-10-19 01:47:20] 2025-10-18 23:46:52,265 | INFO     | all data control threads have been joined
[2025-10-19 01:47:20] 2025-10-18 23:46:52,298 | INFO     | [job] retrieve thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:52,298 | INFO     | [job] queue monitor thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:52,351 | INFO     | [payload] failed_post thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:52,658 | INFO     | [monitor] cgroup control has ended
[2025-10-19 01:47:20] 2025-10-18 23:46:52,730 | INFO     | all job control threads have been joined
[2025-10-19 01:47:20] 2025-10-18 23:46:52,751 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:52,790 | INFO     | [payload] control thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,187 | INFO     | [job] job monitor thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,271 | INFO     | [data] control thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,393 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,400 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,566 | INFO     | [data] copytool_in thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,566 | INFO     | [job] validate thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,682 | INFO     | [payload] validate_post thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:53,736 | INFO     | [job] control thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:54,018 | INFO     | [data] copytool_out thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:46:55,299 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:47:02,272 | INFO     | job.realtimelogging is not enabled
[2025-10-19 01:47:20] 2025-10-18 23:47:03,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 01:47:20] 2025-10-18 23:47:03,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515302885184)>', '<ExcThread(monitor, started 140514787571456)>']
[2025-10-19 01:47:20] 2025-10-18 23:47:08,898 | INFO     | all workflow threads have been joined
[2025-10-19 01:47:20] 2025-10-18 23:47:08,899 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 01:47:20] 2025-10-18 23:47:08,899 | INFO     | traces error code: 0
[2025-10-19 01:47:20] 2025-10-18 23:47:08,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 01:47:20] 2025-10-18 23:47:20,821 | INFO     | PID=3664730 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 01:47:20] 2025-10-18 23:47:20,822 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 01:47:20] 2025-10-18 23:47:20,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 01:47:20] 2025-10-18 23:47:20,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 01:47:20] 2025-10-18 23:47:20,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 01:47:20] 2025-10-18 23:47:20,822 | INFO     | [monitor] control thread has ended
[2025-10-19 01:47:20] 2025-10-18 23:47:20,860 [wrapper] ==== pilot stdout END ====
[2025-10-19 01:47:20] 2025-10-18 23:47:20,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 01:47:20] 2025-10-18 23:47:20,865 [wrapper] pilotpid: 3664730
[2025-10-19 01:47:20] 2025-10-18 23:47:20,867 [wrapper] Pilot exit status: 0
[2025-10-19 01:47:20] 2025-10-18 23:47:20,873 [wrapper] pandaids: 6848023809
[2025-10-19 01:47:20] 2025-10-18 23:47:20,884 [wrapper] cleanup supervisor_pilot 3688035 3664731
[2025-10-19 01:47:20] 2025-10-18 23:47:20,886 [wrapper] Test setup, not cleaning
[2025-10-19 01:47:20] 2025-10-18 23:47:20,888 [wrapper] apfmon messages muted
[2025-10-19 01:47:20] 2025-10-18 23:47:20,890 [wrapper] ==== wrapper stdout END ====
[2025-10-19 01:47:20] 2025-10-18 23:47:20,892 [wrapper] ==== wrapper stderr END ====
[2025-10-19 01:47:20]  *** Error codes and diagnostics ***
[2025-10-19 01:47:20]     "exeErrorCode": 0,
[2025-10-19 01:47:20]     "exeErrorDiag": "",
[2025-10-19 01:47:20]     "pilotErrorCode": 0,
[2025-10-19 01:47:20]     "pilotErrorDiag": "",
[2025-10-19 01:47:20]  *** Listing of results directory ***
[2025-10-19 01:47:20] total 424216
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc      5112 Oct 18 08:53 queuedata.json
[2025-10-19 01:47:20] -rwx------ 1 boinc boinc     36292 Oct 18 08:53 runpilot2-wrapper.sh
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc    557409 Oct 18 08:53 pilot3.tar.gz
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc       100 Oct 18 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 01:47:20] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 23:31 run_atlas
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc       105 Oct 18 23:31 job.xml
[2025-10-19 01:47:20] -rw-r--r-- 2 boinc boinc 226298530 Oct 18 23:31 EVNT.46771634._001688.pool.root.1
[2025-10-19 01:47:20] -rw-r--r-- 2 boinc boinc    569667 Oct 18 23:31 input.tar.gz
[2025-10-19 01:47:20] -rw-r--r-- 2 boinc boinc     15120 Oct 18 23:31 start_atlas.sh
[2025-10-19 01:47:20] drwxrwx--x 2 boinc boinc      4096 Oct 18 23:31 shared
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc         0 Oct 18 23:31 boinc_setup_complete
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc      6205 Oct 18 23:31 init_data.xml
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc         0 Oct 18 23:31 boinc_lockfile
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc      2558 Oct 18 23:31 pandaJob.out
[2025-10-19 01:47:20] -rw------- 1 boinc boinc    976750 Oct 18 23:31 agis_schedconf.cvmfs.json
[2025-10-19 01:47:20] -rw------- 1 boinc boinc   1560740 Oct 18 23:31 agis_ddmendpoints.agis.ALL.json
[2025-10-19 01:47:20] drwx------ 5 boinc boinc      4096 Oct 18 23:31 pilot3
[2025-10-19 01:47:20] -rw------- 1 boinc boinc 201294626 Oct 19 01:46 HITS.46771637._038737.pool.root.1
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc       529 Oct 19 01:46 boinc_task_state.xml
[2025-10-19 01:47:20] -rw------- 1 boinc boinc      1017 Oct 19 01:46 memory_monitor_summary.json
[2025-10-19 01:47:20] -rw------- 1 boinc boinc    295147 Oct 19 01:46 log.46771637._038737.job.log.tgz.1
[2025-10-19 01:47:20] -rw------- 1 boinc boinc      7755 Oct 19 01:46 heartbeat.json
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc      8192 Oct 19 01:47 boinc_mmap_file
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc        27 Oct 19 01:47 wrapper_checkpoint.txt
[2025-10-19 01:47:20] -rw------- 1 boinc boinc       747 Oct 19 01:47 pilotlog.txt
[2025-10-19 01:47:20] -rw------- 1 boinc boinc        95 Oct 19 01:47 pilot_heartbeat.json
[2025-10-19 01:47:20] -rw------- 1 boinc boinc   1162726 Oct 19 01:47 log.46771637._038737.job.log.1
[2025-10-19 01:47:20] -rw------- 1 boinc boinc       357 Oct 19 01:47 output.list
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc       620 Oct 19 01:47 runtime_log
[2025-10-19 01:47:20] -rw------- 1 boinc boinc   1474560 Oct 19 01:47 result.tar.gz
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc      8777 Oct 19 01:47 runtime_log.err
[2025-10-19 01:47:20] -rw------- 1 boinc boinc       659 Oct 19 01:47 E58LDmfzFU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPhbMDmhY5uvm.diag
[2025-10-19 01:47:20] -rw-r--r-- 1 boinc boinc     11307 Oct 19 01:47 stderr.txt
[2025-10-19 01:47:20] HITS file was successfully produced:
[2025-10-19 01:47:20] -rw------- 1 boinc boinc 201294626 Oct 19 01:46 shared/HITS.pool.root.1
[2025-10-19 01:47:20]  *** Contents of shared directory: ***
[2025-10-19 01:47:20] total 419600
[2025-10-19 01:47:20] -rw-r--r-- 2 boinc boinc 226298530 Oct 18 23:31 ATLAS.root_0
[2025-10-19 01:47:20] -rw-r--r-- 2 boinc boinc    569667 Oct 18 23:31 input.tar.gz
[2025-10-19 01:47:20] -rw-r--r-- 2 boinc boinc     15120 Oct 18 23:31 start_atlas.sh
[2025-10-19 01:47:20] -rw------- 1 boinc boinc 201294626 Oct 19 01:46 HITS.pool.root.1
[2025-10-19 01:47:20] -rw------- 1 boinc boinc   1474560 Oct 19 01:47 result.tar.gz
01:47:22 (3661022): run_atlas exited; CPU time 15794.105820
01:47:22 (3661022): called boinc_finish(0)

</stderr_txt>
]]>

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