Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:32:43 (1737842): wrapper (7.7.26015): starting
00:32:43 (1737842): wrapper: running run_atlas (--nthreads 4)
[2025-10-19 00:32:43] Arguments: --nthreads 4
[2025-10-19 00:32:43] Threads: 4
[2025-10-19 00:32:43] Checking for CVMFS
[2025-10-19 00:32:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-19 00:32:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-19 00:32:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-19 00:32:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-19 00:32:43] 2.9.2.0 85452 4096 99992 151867 1 56 23370472 36864001 0 130560 0 4344162 99.993 149266 2625 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-19 00:32:43] CVMFS is ok
[2025-10-19 00:32:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-19 00:32:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-19 00:32:43] Further information can be found at the LHC@home message board.
[2025-10-19 00:32:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-19 00:32:43] Checking for apptainer binary...
[2025-10-19 00:32:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-19 00:32:43] Running /usr/bin/apptainer --version
[2025-10-19 00:32:43] apptainer version 1.4.1-1.1
[2025-10-19 00:32:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-19 00:32:44] thA373a
[2025-10-19 00:32:44] apptainer works
[2025-10-19 00:32:44] Set ATHENA_PROC_NUMBER=4
[2025-10-19 00:32:44] Set ATHENA_CORE_NUMBER=4
[2025-10-19 00:32:44] Starting ATLAS job with PandaID=6848023271
[2025-10-19 00:32:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 01:51:03]  *** The last 200 lines of the pilot log: ***
[2025-10-19 01:51:03] 2025-10-18 23:50:32,347 | INFO     | collected zombie processes
[2025-10-19 01:51:03] 2025-10-18 23:50:32,347 | INFO     | will attempt to kill all subprocesses of pid=1748209
[2025-10-19 01:51:03] 2025-10-18 23:50:32,397 | INFO     | process IDs to be killed: [1748209] (in reverse order)
[2025-10-19 01:51:03] 2025-10-18 23:50:32,431 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 01:51:03] 2025-10-18 23:50:32,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 01:51:03] 2025-10-18 23:50:32,433 | INFO     | did not find any defunct processes belonging to 1748209
[2025-10-19 01:51:03] 2025-10-18 23:50:32,435 | INFO     | did not find any defunct processes belonging to 1748209
[2025-10-19 01:51:03] 2025-10-18 23:50:32,435 | INFO     | ready for new job
[2025-10-19 01:51:03] 2025-10-18 23:50:32,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 01:51:03] 2025-10-18 23:50:32,436 | INFO     | ***************************************
[2025-10-19 01:51:03] 2025-10-18 23:50:32,436 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 01:51:03] 2025-10-18 23:50:32,436 | INFO     | ***************************************
[2025-10-19 01:51:03] 2025-10-18 23:50:32,436 | INFO     | 
[2025-10-19 01:51:03] 2025-10-18 23:50:32,436 | INFO     | architecture information:
[2025-10-19 01:51:03] 2025-10-18 23:50:32,436 | INFO     | executing command: cat /etc/os-release
[2025-10-19 01:51:03] 2025-10-18 23:50:32,450 | INFO     | cat /etc/os-release:
[2025-10-19 01:51:03] NAME="CentOS Linux"
[2025-10-19 01:51:03] VERSION="7 (Core)"
[2025-10-19 01:51:03] ID="centos"
[2025-10-19 01:51:03] ID_LIKE="rhel fedora"
[2025-10-19 01:51:03] VERSION_ID="7"
[2025-10-19 01:51:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 01:51:03] ANSI_COLOR="0;31"
[2025-10-19 01:51:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 01:51:03] HOME_URL="https://www.centos.org/"
[2025-10-19 01:51:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 01:51:03] 
[2025-10-19 01:51:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 01:51:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 01:51:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 01:51:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 01:51:03] 
[2025-10-19 01:51:03] 2025-10-18 23:50:32,450 | INFO     | ***************************************
[2025-10-19 01:51:03] 2025-10-18 23:50:32,953 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 01:51:03] 2025-10-18 23:50:32,969 | INFO     | sufficient remaining disk space (336355917824 B)
[2025-10-19 01:51:03] 2025-10-18 23:50:32,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 01:51:03] 2025-10-18 23:50:32,969 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 01:51:03] 2025-10-18 23:50:32,969 | INFO     | update_server=False
[2025-10-19 01:51:03] 2025-10-18 23:50:32,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 01:51:03] 2025-10-18 23:50:32,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 01:51:03] 2025-10-18 23:50:33,042 | INFO     | all job control threads have been joined
[2025-10-19 01:51:03] 2025-10-18 23:50:33,163 | INFO     | all data control threads have been joined
[2025-10-19 01:51:03] 2025-10-18 23:50:33,515 | INFO     | all payload control threads have been joined
[2025-10-19 01:51:03] 2025-10-18 23:50:33,679 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 01:51:03] 2025-10-18 23:50:33,679 | INFO     | aborting loop
[2025-10-19 01:51:03] 2025-10-18 23:50:33,974 | INFO     | [job] queue monitor thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:33,974 | INFO     | [job] retrieve thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:33,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 01:51:03] 2025-10-18 23:50:34,048 | INFO     | [job] control thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:34,067 | INFO     | [data] copytool_in thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:34,169 | INFO     | [data] control thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:34,521 | INFO     | [payload] control thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:34,574 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:34,685 | INFO     | [job] job monitor thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:35,108 | INFO     | [job] validate thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:35,311 | INFO     | [payload] validate_post thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:35,347 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:35,360 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:35,443 | INFO     | [payload] failed_post thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:35,581 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 01:51:03] 2025-10-18 23:50:36,005 | INFO     | [data] copytool_out thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:39,588 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:43,042 | INFO     | job.realtimelogging is not enabled
[2025-10-19 01:51:03] 2025-10-18 23:50:44,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 01:51:03] 2025-10-18 23:50:55,752 | INFO     | [monitor] cgroup control has ended
[2025-10-19 01:51:03] 2025-10-18 23:50:56,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752745400128)>', '<ExcThread(monitor, started 139752086939392)>']
[2025-10-19 01:51:03] 2025-10-18 23:51:01,420 | INFO     | all workflow threads have been joined
[2025-10-19 01:51:03] 2025-10-18 23:51:01,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 01:51:03] 2025-10-18 23:51:01,420 | INFO     | traces error code: 0
[2025-10-19 01:51:03] 2025-10-18 23:51:01,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 01:51:03] 2025-10-18 23:51:03,130 | INFO     | PID=1741628 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 01:51:03] 2025-10-18 23:51:03,130 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 01:51:03] 2025-10-18 23:51:03,130 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 01:51:03] 2025-10-18 23:51:03,130 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 01:51:03] 2025-10-18 23:51:03,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 01:51:03] 2025-10-18 23:51:03,130 | INFO     | [monitor] control thread has ended
[2025-10-19 01:51:03] 2025-10-18 23:51:03,206 [wrapper] ==== pilot stdout END ====
[2025-10-19 01:51:03] 2025-10-18 23:51:03,210 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 01:51:03] 2025-10-18 23:51:03,213 [wrapper] pilotpid: 1741628
[2025-10-19 01:51:03] 2025-10-18 23:51:03,217 [wrapper] Pilot exit status: 0
[2025-10-19 01:51:03] 2025-10-18 23:51:03,229 [wrapper] pandaids: 6848023271
[2025-10-19 01:51:03] 2025-10-18 23:51:03,251 [wrapper] cleanup supervisor_pilot 1760616 1741629
[2025-10-19 01:51:03] 2025-10-18 23:51:03,254 [wrapper] Test setup, not cleaning
[2025-10-19 01:51:03] 2025-10-18 23:51:03,258 [wrapper] apfmon messages muted
[2025-10-19 01:51:03] 2025-10-18 23:51:03,262 [wrapper] ==== wrapper stdout END ====
[2025-10-19 01:51:03] 2025-10-18 23:51:03,265 [wrapper] ==== wrapper stderr END ====
[2025-10-19 01:51:03]  *** Error codes and diagnostics ***
[2025-10-19 01:51:03]     "exeErrorCode": 0,
[2025-10-19 01:51:03]     "exeErrorDiag": "",
[2025-10-19 01:51:03]     "pilotErrorCode": 0,
[2025-10-19 01:51:03]     "pilotErrorDiag": "",
[2025-10-19 01:51:03]  *** Listing of results directory ***
[2025-10-19 01:51:03] total 429576
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc    557409 Oct 18 08:39 pilot3.tar.gz
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc      5112 Oct 18 08:43 queuedata.json
[2025-10-19 01:51:03] -rwx------ 1 boinc boinc     36292 Oct 18 08:46 runpilot2-wrapper.sh
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc       100 Oct 19 00:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 01:51:03] -rwxr-xr-x 1 boinc boinc      7986 Oct 19 00:32 run_atlas
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc       105 Oct 19 00:32 job.xml
[2025-10-19 01:51:03] -rw-r--r-- 2 boinc boinc 229971914 Oct 19 00:32 EVNT.46771634._001681.pool.root.1
[2025-10-19 01:51:03] -rw-r--r-- 2 boinc boinc    569683 Oct 19 00:32 input.tar.gz
[2025-10-19 01:51:03] -rw-r--r-- 2 boinc boinc     15120 Oct 19 00:32 start_atlas.sh
[2025-10-19 01:51:03] drwxrwx--x 2 boinc boinc      4096 Oct 19 00:32 shared
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc         0 Oct 19 00:32 boinc_setup_complete
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc      6376 Oct 19 00:32 init_data.xml
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc         0 Oct 19 00:32 boinc_lockfile
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc      2558 Oct 19 00:32 pandaJob.out
[2025-10-19 01:51:03] -rw------- 1 boinc boinc    976750 Oct 19 00:32 agis_schedconf.cvmfs.json
[2025-10-19 01:51:03] -rw------- 1 boinc boinc   1560740 Oct 19 00:32 agis_ddmendpoints.agis.ALL.json
[2025-10-19 01:51:03] drwx------ 5 boinc boinc      4096 Oct 19 00:32 pilot3
[2025-10-19 01:51:03] -rw------- 1 boinc boinc 204128839 Oct 19 01:50 HITS.46771637._038570.pool.root.1
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc       529 Oct 19 01:50 boinc_task_state.xml
[2025-10-19 01:51:03] -rw------- 1 boinc boinc        95 Oct 19 01:50 pilot_heartbeat.json
[2025-10-19 01:51:03] -rw------- 1 boinc boinc      1021 Oct 19 01:50 memory_monitor_summary.json
[2025-10-19 01:51:03] -rw------- 1 boinc boinc    259567 Oct 19 01:50 log.46771637._038570.job.log.tgz.1
[2025-10-19 01:51:03] -rw------- 1 boinc boinc      7769 Oct 19 01:50 heartbeat.json
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc        27 Oct 19 01:50 wrapper_checkpoint.txt
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc      8192 Oct 19 01:50 boinc_mmap_file
[2025-10-19 01:51:03] -rw------- 1 boinc boinc       747 Oct 19 01:51 pilotlog.txt
[2025-10-19 01:51:03] -rw------- 1 boinc boinc    688228 Oct 19 01:51 log.46771637._038570.job.log.1
[2025-10-19 01:51:03] -rw------- 1 boinc boinc       357 Oct 19 01:51 output.list
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc       620 Oct 19 01:51 runtime_log
[2025-10-19 01:51:03] -rw------- 1 boinc boinc    962560 Oct 19 01:51 result.tar.gz
[2025-10-19 01:51:03] -rw------- 1 boinc boinc       659 Oct 19 01:51 uWQMDmgsFU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmOwNDmBixcbm.diag
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc      8782 Oct 19 01:51 runtime_log.err
[2025-10-19 01:51:03] -rw-r--r-- 1 boinc boinc     10375 Oct 19 01:51 stderr.txt
[2025-10-19 01:51:03] HITS file was successfully produced:
[2025-10-19 01:51:03] -rw------- 1 boinc boinc 204128839 Oct 19 01:50 shared/HITS.pool.root.1
[2025-10-19 01:51:03]  *** Contents of shared directory: ***
[2025-10-19 01:51:03] total 425456
[2025-10-19 01:51:03] -rw-r--r-- 2 boinc boinc 229971914 Oct 19 00:32 ATLAS.root_0
[2025-10-19 01:51:03] -rw-r--r-- 2 boinc boinc    569683 Oct 19 00:32 input.tar.gz
[2025-10-19 01:51:03] -rw-r--r-- 2 boinc boinc     15120 Oct 19 00:32 start_atlas.sh
[2025-10-19 01:51:03] -rw------- 1 boinc boinc 204128839 Oct 19 01:50 HITS.pool.root.1
[2025-10-19 01:51:03] -rw------- 1 boinc boinc    962560 Oct 19 01:51 result.tar.gz
01:51:04 (1737842): run_atlas exited; CPU time 17655.175038
01:51:04 (1737842): called boinc_finish(0)

</stderr_txt>
]]>

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