Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:09:45 (3782002): wrapper (7.7.26015): starting
09:09:45 (3782002): wrapper: running run_atlas (--nthreads 9)
[2025-10-18 09:09:45] Arguments: --nthreads 9
[2025-10-18 09:09:45] Threads: 9
[2025-10-18 09:09:45] Checking for CVMFS
[2025-10-18 09:09:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 09:09:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 09:09:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 09:09:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 09:09:45] 2.13.2.0 128560 124657 197748 151851 0 387 28861097 39288833 5505 16776704 1 81836953 99.605 85441830 36205 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 09:09:45] CVMFS is ok
[2025-10-18 09:09:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 09:09:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 09:09:45] Further information can be found at the LHC@home message board.
[2025-10-18 09:09:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 09:09:45] Checking for apptainer binary...
[2025-10-18 09:09:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 09:09:45] Running /usr/bin/apptainer --version
[2025-10-18 09:09:45] apptainer version 1.4.3-1.el9
[2025-10-18 09:09:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 09:09:45] c-211-5.aglt2.org
[2025-10-18 09:09:45] apptainer works
[2025-10-18 09:09:45] Set ATHENA_PROC_NUMBER=9
[2025-10-18 09:09:45] Set ATHENA_CORE_NUMBER=9
[2025-10-18 09:09:45] Starting ATLAS job with PandaID=6848027882
[2025-10-18 09:09:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:10:27 (4076053): wrapper (7.7.26015): starting
11:10:27 (4076053): wrapper: running run_atlas (--nthreads 8)
[2025-10-18 11:10:27] Arguments: --nthreads 8
[2025-10-18 11:10:27] Threads: 8
[2025-10-18 11:10:27] This job has been restarted, cleaning up previous attempt
[2025-10-18 11:10:27] Checking for CVMFS
[2025-10-18 11:10:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 11:10:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 11:10:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 11:10:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 11:10:28] 2.13.2.0 128560 124778 188292 151855 0 169 29666549 39288833 5943 16776704 1 82062647 99.603 85695343 36209 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-18 11:10:28] CVMFS is ok
[2025-10-18 11:10:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 11:10:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 11:10:28] Further information can be found at the LHC@home message board.
[2025-10-18 11:10:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 11:10:28] Checking for apptainer binary...
[2025-10-18 11:10:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 11:10:28] Running /usr/bin/apptainer --version
[2025-10-18 11:10:28] apptainer version 1.4.3-1.el9
[2025-10-18 11:10:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 11:10:28] c-211-5.aglt2.org
[2025-10-18 11:10:28] apptainer works
[2025-10-18 11:10:28] Set ATHENA_PROC_NUMBER=8
[2025-10-18 11:10:28] Set ATHENA_CORE_NUMBER=8
[2025-10-18 11:10:28] Starting ATLAS job with PandaID=6848027882
[2025-10-18 11:10:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 19:03:55]  *** The last 200 lines of the pilot log: ***
[2025-10-18 19:03:55] 2025-10-18 23:03:22,374 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-18 19:03:55] 2025-10-18 23:03:22,374 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-18 19:03:55] 2025-10-18 23:03:22,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-18 19:03:55] 2025-10-18 23:03:22,384 | INFO     | fitting pss+swap vs Time
[2025-10-18 19:03:55] 2025-10-18 23:03:22,385 | INFO     | sum of square deviations: 30975936520.543068
[2025-10-18 19:03:55] 2025-10-18 23:03:22,390 | INFO     | sum of deviations: 129258603938.84047
[2025-10-18 19:03:55] 2025-10-18 23:03:22,391 | INFO     | mean x: 1760814404.3060346
[2025-10-18 19:03:55] 2025-10-18 23:03:22,391 | INFO     | mean y: 2513771.5926724137
[2025-10-18 19:03:55] 2025-10-18 23:03:22,391 | INFO     | -- intersect: -7345138543.779801
[2025-10-18 19:03:55] 2025-10-18 23:03:22,391 | INFO     | intersect: -7345138543.779801
[2025-10-18 19:03:55] 2025-10-18 23:03:22,392 | INFO     | chi2: 1.7492329168366947
[2025-10-18 19:03:55] 2025-10-18 23:03:22,393 | INFO     | sum of square deviations: 29985408757.25919
[2025-10-18 19:03:55] 2025-10-18 23:03:22,398 | INFO     | sum of deviations: 126446952527.70372
[2025-10-18 19:03:55] 2025-10-18 23:03:22,398 | INFO     | mean x: 1760814251.8148148
[2025-10-18 19:03:55] 2025-10-18 23:03:22,399 | INFO     | mean y: 2513339.631808279
[2025-10-18 19:03:55] 2025-10-18 23:03:22,399 | INFO     | -- intersect: -7422751325.317294
[2025-10-18 19:03:55] 2025-10-18 23:03:22,399 | INFO     | intersect: -7422751325.317294
[2025-10-18 19:03:55] 2025-10-18 23:03:22,400 | INFO     | chi2: 1.7492084511371533
[2025-10-18 19:03:55] 2025-10-18 23:03:22,400 | INFO     | current chi2=1.7492084511371533 (change=0.001398653049911843 %)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,400 | INFO     | right removable region: 458
[2025-10-18 19:03:55] 2025-10-18 23:03:22,401 | INFO     | sum of square deviations: 29985180617.259193
[2025-10-18 19:03:55] 2025-10-18 23:03:22,406 | INFO     | sum of deviations: 40532266811.29631
[2025-10-18 19:03:55] 2025-10-18 23:03:22,407 | INFO     | mean x: 1760814556.8148148
[2025-10-18 19:03:55] 2025-10-18 23:03:22,407 | INFO     | mean y: 2527385.250544662
[2025-10-18 19:03:55] 2025-10-18 23:03:22,407 | INFO     | -- intersect: -2377641883.463239
[2025-10-18 19:03:55] 2025-10-18 23:03:22,407 | INFO     | intersect: -2377641883.463239
[2025-10-18 19:03:55] 2025-10-18 23:03:22,408 | INFO     | chi2: 0.08047473346742715
[2025-10-18 19:03:55] 2025-10-18 23:03:22,408 | INFO     | current chi2=0.08047473346742715 (change=95.39942721790547 %)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,408 | INFO     | sum of square deviations: 29015773951.403095
[2025-10-18 19:03:55] 2025-10-18 23:03:22,414 | INFO     | sum of deviations: 23433695471.87445
[2025-10-18 19:03:55] 2025-10-18 23:03:22,414 | INFO     | mean x: 1760814709.3237886
[2025-10-18 19:03:55] 2025-10-18 23:03:22,414 | INFO     | mean y: 2530063.817180617
[2025-10-18 19:03:55] 2025-10-18 23:03:22,415 | INFO     | -- intersect: -1419537662.165207
[2025-10-18 19:03:55] 2025-10-18 23:03:22,415 | INFO     | intersect: -1419537662.165207
[2025-10-18 19:03:55] 2025-10-18 23:03:22,415 | INFO     | chi2: 0.013318797709299444
[2025-10-18 19:03:55] 2025-10-18 23:03:22,416 | INFO     | current chi2=0.013318797709299444 (change=83.44971504044764 %)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,416 | INFO     | sum of square deviations: 28067539471.795216
[2025-10-18 19:03:55] 2025-10-18 23:03:22,422 | INFO     | sum of deviations: 21881464741.572388
[2025-10-18 19:03:55] 2025-10-18 23:03:22,422 | INFO     | mean x: 1760814861.828508
[2025-10-18 19:03:55] 2025-10-18 23:03:22,422 | INFO     | mean y: 2530313.033407572
[2025-10-18 19:03:55] 2025-10-18 23:03:22,422 | INFO     | -- intersect: -1370201641.4100788
[2025-10-18 19:03:55] 2025-10-18 23:03:22,422 | INFO     | intersect: -1370201641.4100788
[2025-10-18 19:03:55] 2025-10-18 23:03:22,423 | INFO     | chi2: 0.01317505778449467
[2025-10-18 19:03:55] 2025-10-18 23:03:22,423 | INFO     | current chi2=0.01317505778449467 (change=1.0792259777653412 %)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,423 | INFO     | left removable region: 30
[2025-10-18 19:03:55] 2025-10-18 23:03:22,424 | INFO     | sum of square deviations: 24310719103.551254
[2025-10-18 19:03:55] 2025-10-18 23:03:22,429 | INFO     | sum of deviations: 19010901824.280373
[2025-10-18 19:03:55] 2025-10-18 23:03:22,429 | INFO     | mean x: 1760815136.3364487
[2025-10-18 19:03:55] 2025-10-18 23:03:22,429 | INFO     | mean y: 2530209.2897196263
[2025-10-18 19:03:55] 2025-10-18 23:03:22,429 | INFO     | -- intersect: -1374421395.679842
[2025-10-18 19:03:55] 2025-10-18 23:03:22,430 | INFO     | intersect: -1374421395.679842
[2025-10-18 19:03:55] 2025-10-18 23:03:22,430 | INFO     | chi2: 0.012636022864998264
[2025-10-18 19:03:55] 2025-10-18 23:03:22,430 | INFO     | -- intersect: -1374421395.679842
[2025-10-18 19:03:55] 2025-10-18 23:03:22,431 | INFO     | current memory leak: 0.78 B/s (using 428 data points, chi2=0.01)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,431 | INFO     | could have reported an average CPU frequency of 2601 MHz (18 samples)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | ..............................
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | . Timing measurements:
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | . get job = 0 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | . initial setup = 1 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | . payload setup = 7 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | . stage-in = 0 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,432 | INFO     | . payload execution = 28315 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,433 | INFO     | . stage-out = 3 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,433 | INFO     | . log creation = 0 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,433 | INFO     | ..............................
[2025-10-18 19:03:55] 2025-10-18 23:03:22,588 | INFO     | 
[2025-10-18 19:03:55] 2025-10-18 23:03:22,588 | INFO     | job summary report
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | --------------------------------------------------
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | PanDA job id: 6848027882
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | task id: 46771637
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | errors: (none)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | pilot state: finished 
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | transexitcode: 0
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | exeerrorcode: 0
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | exeerrordiag: 
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | exitcode: 0
[2025-10-18 19:03:55] 2025-10-18 23:03:22,589 | INFO     | exitmsg: OK
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | cpuconsumptiontime: 59728 s
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | nevents: 400
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | neventsw: 0
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | pid: 4096917
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | pgrp: 4096917
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | corecount: 8
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | event service: False
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | sizes: {0: 2348878, 7: 2349140, 11: 2349168, 28326: 2385751, 28330: 2394749, 28331: 2394805, 28342: 2395127}
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | --------------------------------------------------
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | 
[2025-10-18 19:03:55] 2025-10-18 23:03:22,590 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-18 19:03:55] 2025-10-18 23:03:22,639 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,641 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,642 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 19:03:55] 2025-10-18 23:03:22,642 | INFO     | job 6848027882 has completed (purged errors)
[2025-10-18 19:03:55] 2025-10-18 23:03:22,642 | INFO     | overall cleanup function is called
[2025-10-18 19:03:55] 2025-10-18 23:03:23,655 | INFO     | --- collectZombieJob: --- 10, [4096917]
[2025-10-18 19:03:55] 2025-10-18 23:03:23,661 | INFO     | zombie collector waiting for pid 4096917
[2025-10-18 19:03:55] 2025-10-18 23:03:23,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 19:03:55] 2025-10-18 23:03:23,661 | INFO     | collected zombie processes
[2025-10-18 19:03:55] 2025-10-18 23:03:23,661 | INFO     | will attempt to kill all subprocesses of pid=4096917
[2025-10-18 19:03:55] 2025-10-18 23:03:24,875 | INFO     | process IDs to be killed: [4096917] (in reverse order)
[2025-10-18 19:03:55] 2025-10-18 23:03:24,989 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 19:03:55] 2025-10-18 23:03:24,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 19:03:55] 2025-10-18 23:03:25,050 | INFO     | did not find any defunct processes belonging to 4096917
[2025-10-18 19:03:55] 2025-10-18 23:03:25,071 | INFO     | did not find any defunct processes belonging to 4096917
[2025-10-18 19:03:55] 2025-10-18 23:03:25,071 | INFO     | ready for new job
[2025-10-18 19:03:55] 2025-10-18 23:03:25,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 19:03:55] 2025-10-18 23:03:25,074 | INFO     | ***************************************
[2025-10-18 19:03:55] 2025-10-18 23:03:25,075 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 19:03:55] 2025-10-18 23:03:25,075 | INFO     | ***************************************
[2025-10-18 19:03:55] 2025-10-18 23:03:25,075 | INFO     | 
[2025-10-18 19:03:55] 2025-10-18 23:03:25,100 | INFO     | architecture information:
[2025-10-18 19:03:55] 2025-10-18 23:03:25,114 | INFO     | executing command: cat /etc/os-release
[2025-10-18 19:03:55] 2025-10-18 23:03:25,145 | INFO     | cat /etc/os-release:
[2025-10-18 19:03:55] NAME="CentOS Linux"
[2025-10-18 19:03:55] VERSION="7 (Core)"
[2025-10-18 19:03:55] ID="centos"
[2025-10-18 19:03:55] ID_LIKE="rhel fedora"
[2025-10-18 19:03:55] VERSION_ID="7"
[2025-10-18 19:03:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 19:03:55] ANSI_COLOR="0;31"
[2025-10-18 19:03:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 19:03:55] HOME_URL="https://www.centos.org/"
[2025-10-18 19:03:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 19:03:55] 
[2025-10-18 19:03:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 19:03:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 19:03:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 19:03:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 19:03:55] 
[2025-10-18 19:03:55] 2025-10-18 23:03:25,146 | INFO     | ***************************************
[2025-10-18 19:03:55] 2025-10-18 23:03:25,649 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-18 19:03:55] 2025-10-18 23:03:25,668 | INFO     | sufficient remaining disk space (53028585472 B)
[2025-10-18 19:03:55] 2025-10-18 23:03:25,668 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 19:03:55] 2025-10-18 23:03:25,669 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 19:03:55] 2025-10-18 23:03:25,669 | INFO     | update_server=False
[2025-10-18 19:03:55] 2025-10-18 23:03:25,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 19:03:55] 2025-10-18 23:03:25,669 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 19:03:55] 2025-10-18 23:03:25,669 | INFO     | aborting loop
[2025-10-18 19:03:55] 2025-10-18 23:03:25,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 19:03:55] 2025-10-18 23:03:25,853 | INFO     | all job control threads have been joined
[2025-10-18 19:03:55] 2025-10-18 23:03:26,002 | INFO     | all payload control threads have been joined
[2025-10-18 19:03:55] 2025-10-18 23:03:26,041 | INFO     | all data control threads have been joined
[2025-10-18 19:03:55] 2025-10-18 23:03:26,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 19:03:55] 2025-10-18 23:03:26,674 | INFO     | [job] retrieve thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:26,675 | INFO     | [job] job monitor thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:26,784 | INFO     | [job] validate thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:26,859 | INFO     | [job] control thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:26,870 | INFO     | [payload] validate_post thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:26,929 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,008 | INFO     | [payload] control thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,047 | INFO     | [data] control thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,603 | INFO     | [data] copytool_in thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 19:03:55] 2025-10-18 23:03:27,680 | INFO     | [data] copytool_out thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,709 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,777 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,855 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:27,903 | INFO     | [payload] failed_post thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:28,615 | INFO     | [job] queue monitor thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:30,179 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 19:03:55] 2025-10-18 23:03:33,723 | INFO     | [monitor] cgroup control has ended
[2025-10-18 19:03:55] 2025-10-18 23:03:34,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052144625472)>', '<ExcThread(monitor, started 140051795126016)>']
[2025-10-18 19:03:55] 2025-10-18 23:03:39,849 | INFO     | all workflow threads have been joined
[2025-10-18 19:03:55] 2025-10-18 23:03:39,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 19:03:55] 2025-10-18 23:03:39,856 | INFO     | traces error code: 0
[2025-10-18 19:03:55] 2025-10-18 23:03:39,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 19:03:55] 2025-10-18 23:03:55,448 | INFO     | PID=4083481 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 19:03:55] 2025-10-18 23:03:55,449 | INFO     | .. there are 7 such processes running
[2025-10-18 19:03:55] 2025-10-18 23:03:55,449 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 19:03:55] 2025-10-18 23:03:55,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 19:03:55] 2025-10-18 23:03:55,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 19:03:55] 2025-10-18 23:03:55,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 19:03:55] 2025-10-18 23:03:55,450 | INFO     | [monitor] control thread has ended
[2025-10-18 19:03:55] 2025-10-18 23:03:55,615 [wrapper] ==== pilot stdout END ====
[2025-10-18 19:03:55] 2025-10-18 23:03:55,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 19:03:55] 2025-10-18 23:03:55,623 [wrapper] pilotpid: 4083481
[2025-10-18 19:03:55] 2025-10-18 23:03:55,626 [wrapper] Pilot exit status: 0
[2025-10-18 19:03:55] 2025-10-18 23:03:55,640 [wrapper] pandaids: 6848027882 6848027882
[2025-10-18 19:03:55] 2025-10-18 23:03:55,692 [wrapper] cleanup supervisor_pilot  755249 4083482
[2025-10-18 19:03:55] 2025-10-18 23:03:55,696 [wrapper] Test setup, not cleaning
[2025-10-18 19:03:55] 2025-10-18 23:03:55,700 [wrapper] apfmon messages muted
[2025-10-18 19:03:55] 2025-10-18 23:03:55,704 [wrapper] ==== wrapper stdout END ====
[2025-10-18 19:03:55] 2025-10-18 23:03:55,707 [wrapper] ==== wrapper stderr END ====
[2025-10-18 19:03:55]  *** Error codes and diagnostics ***
[2025-10-18 19:03:55]     "exeErrorCode": 0,
[2025-10-18 19:03:55]     "exeErrorDiag": "",
[2025-10-18 19:03:55]     "pilotErrorCode": 0,
[2025-10-18 19:03:55]     "pilotErrorDiag": "",
[2025-10-18 19:03:55]  *** Listing of results directory ***
[2025-10-18 19:03:55] total 669176
[2025-10-18 19:03:55] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas    557409 Oct 18 04:34 pilot3.tar.gz
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas      5112 Oct 18 04:35 queuedata.json
[2025-10-18 19:03:55] -rwx------. 1 boincer umatlas     36292 Oct 18 04:36 runpilot2-wrapper.sh
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas       100 Oct 18 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 19:03:55] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 18 09:09 run_atlas
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas       105 Oct 18 09:09 job.xml
[2025-10-18 19:03:55] -rw-r--r--. 3 boincer umatlas 227454324 Oct 18 09:09 EVNT.46771634._001747.pool.root.1
[2025-10-18 19:03:55] -rw-r--r--. 3 boincer umatlas 227454324 Oct 18 09:09 ATLAS.root_0
[2025-10-18 19:03:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 09:09 start_atlas.sh
[2025-10-18 19:03:55] drwxrwx--x. 2 boincer umatlas      4096 Oct 18 09:09 shared
[2025-10-18 19:03:55] -rw-r--r--. 2 boincer umatlas    569675 Oct 18 09:09 input.tar.gz
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas         0 Oct 18 09:09 boinc_lockfile
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas      2557 Oct 18 11:10 pandaJob.out
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas    976742 Oct 18 11:10 agis_schedconf.cvmfs.json
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas 218052176 Oct 18 19:02 HITS.46771637._040051.pool.root.1
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas       531 Oct 18 19:02 boinc_task_state.xml
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas      1053 Oct 18 19:03 memory_monitor_summary.json
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas   1560740 Oct 18 19:03 agis_ddmendpoints.agis.ALL.json
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas    628836 Oct 18 19:03 log.46771637._040051.job.log.tgz.1
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas      6660 Oct 18 19:03 init_data.xml
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas        96 Oct 18 19:03 pilot_heartbeat.json
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas      7842 Oct 18 19:03 heartbeat.json
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas      8192 Oct 18 19:03 boinc_mmap_file
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas       822 Oct 18 19:03 pilotlog.txt
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas        28 Oct 18 19:03 wrapper_checkpoint.txt
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas   3555951 Oct 18 19:03 log.46771637._040051.job.log.1
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas       357 Oct 18 19:03 output.list
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas       620 Oct 18 19:03 runtime_log
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas   4208640 Oct 18 19:03 result.tar.gz
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas       785 Oct 18 19:03 ZXxLDmcbHU8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5obMDm383pKo.diag
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas      8784 Oct 18 19:03 runtime_log.err
[2025-10-18 19:03:55] -rw-r--r--. 1 boincer umatlas     23152 Oct 18 19:03 stderr.txt
[2025-10-18 19:03:55] HITS file was successfully produced:
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas 218052176 Oct 18 19:02 shared/HITS.pool.root.1
[2025-10-18 19:03:55]  *** Contents of shared directory: ***
[2025-10-18 19:03:55] total 439760
[2025-10-18 19:03:55] -rw-r--r--. 3 boincer umatlas 227454324 Oct 18 09:09 ATLAS.root_0
[2025-10-18 19:03:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 18 09:09 start_atlas.sh
[2025-10-18 19:03:55] -rw-r--r--. 2 boincer umatlas    569675 Oct 18 09:09 input.tar.gz
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas 218052176 Oct 18 19:02 HITS.pool.root.1
[2025-10-18 19:03:55] -rw-------. 1 boincer umatlas   4208640 Oct 18 19:03 result.tar.gz
19:03:57 (4076053): run_atlas exited; CPU time 60344.150193
19:03:57 (4076053): called boinc_finish(0)

</stderr_txt>
]]>

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