Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:16:43 (1688062): wrapper (7.7.26015): starting
22:16:43 (1688062): wrapper: running run_atlas (--nthreads 4)
[2025-10-18 22:16:43] Arguments: --nthreads 4
[2025-10-18 22:16:43] Threads: 4
[2025-10-18 22:16:43] Checking for CVMFS
[2025-10-18 22:16:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 22:16:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 22:16:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 22:16:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 22:16:44] 2.9.2.0 85452 3960 100956 151863 1 56 23348704 36864000 0 130560 0 4218404 99.993 143936 2700 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 22:16:44] CVMFS is ok
[2025-10-18 22:16:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 22:16:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 22:16:44] Further information can be found at the LHC@home message board.
[2025-10-18 22:16:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 22:16:44] Checking for apptainer binary...
[2025-10-18 22:16:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 22:16:44] Running /usr/bin/apptainer --version
[2025-10-18 22:16:44] apptainer version 1.4.1-1.1
[2025-10-18 22:16:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 22:16:44] thA373a
[2025-10-18 22:16:44] apptainer works
[2025-10-18 22:16:44] Set ATHENA_PROC_NUMBER=4
[2025-10-18 22:16:44] Set ATHENA_CORE_NUMBER=4
[2025-10-18 22:16:44] Starting ATLAS job with PandaID=6849796061
[2025-10-18 22:16:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 23:15:10]  *** The last 200 lines of the pilot log: ***
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | job 6849796061 has completed (purged errors)
[2025-10-18 23:15:10] 2025-10-18 21:14:39,230 | INFO     | overall cleanup function is called
[2025-10-18 23:15:10] 2025-10-18 21:14:40,237 | INFO     | --- collectZombieJob: --- 10, [1698413]
[2025-10-18 23:15:10] 2025-10-18 21:14:40,237 | INFO     | zombie collector waiting for pid 1698413
[2025-10-18 23:15:10] 2025-10-18 21:14:40,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 23:15:10] 2025-10-18 21:14:40,237 | INFO     | collected zombie processes
[2025-10-18 23:15:10] 2025-10-18 21:14:40,238 | INFO     | will attempt to kill all subprocesses of pid=1698413
[2025-10-18 23:15:10] 2025-10-18 21:14:40,289 | INFO     | process IDs to be killed: [1698413] (in reverse order)
[2025-10-18 23:15:10] 2025-10-18 21:14:40,323 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 23:15:10] 2025-10-18 21:14:40,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 23:15:10] 2025-10-18 21:14:40,325 | INFO     | did not find any defunct processes belonging to 1698413
[2025-10-18 23:15:10] 2025-10-18 21:14:40,327 | INFO     | did not find any defunct processes belonging to 1698413
[2025-10-18 23:15:10] 2025-10-18 21:14:40,327 | INFO     | ready for new job
[2025-10-18 23:15:10] 2025-10-18 21:14:40,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 23:15:10] 2025-10-18 21:14:40,327 | INFO     | ***************************************
[2025-10-18 23:15:10] 2025-10-18 21:14:40,327 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 23:15:10] 2025-10-18 21:14:40,327 | INFO     | ***************************************
[2025-10-18 23:15:10] 2025-10-18 21:14:40,328 | INFO     | 
[2025-10-18 23:15:10] 2025-10-18 21:14:40,328 | INFO     | architecture information:
[2025-10-18 23:15:10] 2025-10-18 21:14:40,328 | INFO     | executing command: cat /etc/os-release
[2025-10-18 23:15:10] 2025-10-18 21:14:40,341 | INFO     | cat /etc/os-release:
[2025-10-18 23:15:10] NAME="CentOS Linux"
[2025-10-18 23:15:10] VERSION="7 (Core)"
[2025-10-18 23:15:10] ID="centos"
[2025-10-18 23:15:10] ID_LIKE="rhel fedora"
[2025-10-18 23:15:10] VERSION_ID="7"
[2025-10-18 23:15:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 23:15:10] ANSI_COLOR="0;31"
[2025-10-18 23:15:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 23:15:10] HOME_URL="https://www.centos.org/"
[2025-10-18 23:15:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 23:15:10] 
[2025-10-18 23:15:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 23:15:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 23:15:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 23:15:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 23:15:10] 
[2025-10-18 23:15:10] 2025-10-18 21:14:40,341 | INFO     | ***************************************
[2025-10-18 23:15:10] 2025-10-18 21:14:40,845 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | INFO     | sufficient remaining disk space (336507961344 B)
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | INFO     | update_server=False
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 23:15:10] 2025-10-18 21:14:40,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 23:15:10] 2025-10-18 21:14:41,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 23:15:10] 2025-10-18 21:14:41,157 | INFO     | aborting loop
[2025-10-18 23:15:10] 2025-10-18 21:14:41,584 | INFO     | all data control threads have been joined
[2025-10-18 23:15:10] 2025-10-18 21:14:41,678 | INFO     | all job control threads have been joined
[2025-10-18 23:15:10] 2025-10-18 21:14:41,867 | INFO     | [job] queue monitor thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:41,867 | INFO     | [job] retrieve thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,163 | INFO     | [job] job monitor thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,283 | INFO     | all payload control threads have been joined
[2025-10-18 23:15:10] 2025-10-18 21:14:42,299 | INFO     | [job] validate thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,410 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,441 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,472 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 23:15:10] 2025-10-18 21:14:42,590 | INFO     | [data] control thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,684 | INFO     | [job] control thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,752 | INFO     | [data] copytool_in thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,863 | INFO     | [data] copytool_out thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:42,898 | INFO     | [payload] failed_post thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:43,289 | INFO     | [payload] control thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:43,408 | INFO     | [payload] validate_post thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:46,481 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:50,938 | INFO     | job.realtimelogging is not enabled
[2025-10-18 23:15:10] 2025-10-18 21:14:51,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 23:15:10] 2025-10-18 21:14:55,132 | INFO     | [monitor] cgroup control has ended
[2025-10-18 23:15:10] 2025-10-18 21:14:55,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340094900032)>', '<ExcThread(monitor, started 140339289499392)>']
[2025-10-18 23:15:10] 2025-10-18 21:15:00,490 | INFO     | all workflow threads have been joined
[2025-10-18 23:15:10] 2025-10-18 21:15:00,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 23:15:10] 2025-10-18 21:15:00,492 | INFO     | traces error code: 0
[2025-10-18 23:15:10] 2025-10-18 21:15:00,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 23:15:10] 2025-10-18 21:15:10,392 | INFO     | PID=1691846 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 23:15:10] 2025-10-18 21:15:10,392 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 23:15:10] 2025-10-18 21:15:10,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 23:15:10] 2025-10-18 21:15:10,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 23:15:10] 2025-10-18 21:15:10,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 23:15:10] 2025-10-18 21:15:10,393 | INFO     | [monitor] control thread has ended
[2025-10-18 23:15:10] 2025-10-18 21:15:10,467 [wrapper] ==== pilot stdout END ====
[2025-10-18 23:15:10] 2025-10-18 21:15:10,471 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 23:15:10] 2025-10-18 21:15:10,475 [wrapper] pilotpid: 1691846
[2025-10-18 23:15:10] 2025-10-18 21:15:10,479 [wrapper] Pilot exit status: 0
[2025-10-18 23:15:10] 2025-10-18 21:15:10,490 [wrapper] pandaids: 6849796061
[2025-10-18 23:15:10] 2025-10-18 21:15:10,512 [wrapper] cleanup supervisor_pilot 1708413 1691847
[2025-10-18 23:15:10] 2025-10-18 21:15:10,516 [wrapper] Test setup, not cleaning
[2025-10-18 23:15:10] 2025-10-18 21:15:10,519 [wrapper] apfmon messages muted
[2025-10-18 23:15:10] 2025-10-18 21:15:10,523 [wrapper] ==== wrapper stdout END ====
[2025-10-18 23:15:10] 2025-10-18 21:15:10,526 [wrapper] ==== wrapper stderr END ====
[2025-10-18 23:15:10]  *** Error codes and diagnostics ***
[2025-10-18 23:15:10]     "exeErrorCode": 0,
[2025-10-18 23:15:10]     "exeErrorDiag": "",
[2025-10-18 23:15:10]     "pilotErrorCode": 0,
[2025-10-18 23:15:10]     "pilotErrorDiag": "",
[2025-10-18 23:15:10]  *** Listing of results directory ***
[2025-10-18 23:15:10] total 336912
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc    557409 Oct 18 07:15 pilot3.tar.gz
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc      5112 Oct 18 07:37 queuedata.json
[2025-10-18 23:15:10] -rwx------ 1 boinc boinc     36292 Oct 18 07:38 runpilot2-wrapper.sh
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc       100 Oct 18 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 23:15:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 22:16 run_atlas
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc       105 Oct 18 22:16 job.xml
[2025-10-18 23:15:10] -rw-r--r-- 2 boinc boinc 190536654 Oct 18 22:16 EVNT.46809186._000051.pool.root.1
[2025-10-18 23:15:10] -rw-r--r-- 2 boinc boinc    569667 Oct 18 22:16 input.tar.gz
[2025-10-18 23:15:10] -rw-r--r-- 2 boinc boinc     15120 Oct 18 22:16 start_atlas.sh
[2025-10-18 23:15:10] drwxrwx--x 2 boinc boinc      4096 Oct 18 22:16 shared
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc         0 Oct 18 22:16 boinc_setup_complete
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc      6376 Oct 18 22:16 init_data.xml
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc         0 Oct 18 22:16 boinc_lockfile
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc      2488 Oct 18 22:16 pandaJob.out
[2025-10-18 23:15:10] -rw------- 1 boinc boinc    976750 Oct 18 22:16 agis_schedconf.cvmfs.json
[2025-10-18 23:15:10] -rw------- 1 boinc boinc   1560740 Oct 18 22:16 agis_ddmendpoints.agis.ALL.json
[2025-10-18 23:15:10] drwx------ 5 boinc boinc      4096 Oct 18 22:16 pilot3
[2025-10-18 23:15:10] -rw------- 1 boinc boinc 149028226 Oct 18 23:14 HITS.46809188._001300.pool.root.1
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc       529 Oct 18 23:14 boinc_task_state.xml
[2025-10-18 23:15:10] -rw------- 1 boinc boinc      1019 Oct 18 23:14 memory_monitor_summary.json
[2025-10-18 23:15:10] -rw------- 1 boinc boinc    247063 Oct 18 23:14 log.46809188._001300.job.log.tgz.1
[2025-10-18 23:15:10] -rw------- 1 boinc boinc      7752 Oct 18 23:14 heartbeat.json
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc        27 Oct 18 23:15 wrapper_checkpoint.txt
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc      8192 Oct 18 23:15 boinc_mmap_file
[2025-10-18 23:15:10] -rw------- 1 boinc boinc       747 Oct 18 23:15 pilotlog.txt
[2025-10-18 23:15:10] -rw------- 1 boinc boinc        95 Oct 18 23:15 pilot_heartbeat.json
[2025-10-18 23:15:10] -rw------- 1 boinc boinc    522925 Oct 18 23:15 log.46809188._001300.job.log.1
[2025-10-18 23:15:10] -rw------- 1 boinc boinc       357 Oct 18 23:15 output.list
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc       620 Oct 18 23:15 runtime_log
[2025-10-18 23:15:10] -rw------- 1 boinc boinc    788480 Oct 18 23:15 result.tar.gz
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc      8782 Oct 18 23:15 runtime_log.err
[2025-10-18 23:15:10] -rw------- 1 boinc boinc       658 Oct 18 23:15 8FiNDmtoEU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCGwNDmHVPepm.diag
[2025-10-18 23:15:10] -rw-r--r-- 1 boinc boinc     12443 Oct 18 23:15 stderr.txt
[2025-10-18 23:15:10] HITS file was successfully produced:
[2025-10-18 23:15:10] -rw------- 1 boinc boinc 149028226 Oct 18 23:14 shared/HITS.pool.root.1
[2025-10-18 23:15:10]  *** Contents of shared directory: ***
[2025-10-18 23:15:10] total 332964
[2025-10-18 23:15:10] -rw-r--r-- 2 boinc boinc 190536654 Oct 18 22:16 ATLAS.root_0
[2025-10-18 23:15:10] -rw-r--r-- 2 boinc boinc    569667 Oct 18 22:16 input.tar.gz
[2025-10-18 23:15:10] -rw-r--r-- 2 boinc boinc     15120 Oct 18 22:16 start_atlas.sh
[2025-10-18 23:15:10] -rw------- 1 boinc boinc 149028226 Oct 18 23:14 HITS.pool.root.1
[2025-10-18 23:15:10] -rw------- 1 boinc boinc    788480 Oct 18 23:15 result.tar.gz
23:15:12 (1688062): run_atlas exited; CPU time 12772.947117
23:15:12 (1688062): called boinc_finish(0)

</stderr_txt>
]]>

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