Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:39:10 (1246682): wrapper (7.7.26015): starting
23:39:10 (1246682): wrapper: running run_atlas (--nthreads 4)
[2025-10-18 23:39:10] Arguments: --nthreads 4
[2025-10-18 23:39:10] Threads: 4
[2025-10-18 23:39:10] Checking for CVMFS
[2025-10-18 23:39:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 23:39:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 23:39:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 23:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 23:39:10] 2.9.2.0 4165322 3971 92684 151865 2 57 29794823 36864000 0 130560 0 3270021 99.991 142690 2796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 23:39:10] CVMFS is ok
[2025-10-18 23:39:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 23:39:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 23:39:10] Further information can be found at the LHC@home message board.
[2025-10-18 23:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 23:39:10] Checking for apptainer binary...
[2025-10-18 23:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 23:39:10] Running /usr/bin/apptainer --version
[2025-10-18 23:39:10] apptainer version 1.4.1-1.1
[2025-10-18 23:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 23:39:10] thA309
[2025-10-18 23:39:10] apptainer works
[2025-10-18 23:39:10] Set ATHENA_PROC_NUMBER=4
[2025-10-18 23:39:10] Set ATHENA_CORE_NUMBER=4
[2025-10-18 23:39:10] Starting ATLAS job with PandaID=6848017070
[2025-10-18 23:39:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-19 00:59:30]  *** The last 200 lines of the pilot log: ***
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | job 6848017070 has completed (purged errors)
[2025-10-19 00:59:30] 2025-10-18 22:58:56,633 | INFO     | overall cleanup function is called
[2025-10-19 00:59:30] 2025-10-18 22:58:57,640 | INFO     | --- collectZombieJob: --- 10, [1257041]
[2025-10-19 00:59:30] 2025-10-18 22:58:57,640 | INFO     | zombie collector waiting for pid 1257041
[2025-10-19 00:59:30] 2025-10-18 22:58:57,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-19 00:59:30] 2025-10-18 22:58:57,641 | INFO     | collected zombie processes
[2025-10-19 00:59:30] 2025-10-18 22:58:57,641 | INFO     | will attempt to kill all subprocesses of pid=1257041
[2025-10-19 00:59:30] 2025-10-18 22:58:57,692 | INFO     | process IDs to be killed: [1257041] (in reverse order)
[2025-10-19 00:59:30] 2025-10-18 22:58:57,729 | WARNING  | found no corresponding commands to process id(s)
[2025-10-19 00:59:30] 2025-10-18 22:58:57,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-19 00:59:30] 2025-10-18 22:58:57,731 | INFO     | did not find any defunct processes belonging to 1257041
[2025-10-19 00:59:30] 2025-10-18 22:58:57,733 | INFO     | did not find any defunct processes belonging to 1257041
[2025-10-19 00:59:30] 2025-10-18 22:58:57,733 | INFO     | ready for new job
[2025-10-19 00:59:30] 2025-10-18 22:58:57,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-19 00:59:30] 2025-10-18 22:58:57,733 | INFO     | ***************************************
[2025-10-19 00:59:30] 2025-10-18 22:58:57,734 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-19 00:59:30] 2025-10-18 22:58:57,734 | INFO     | ***************************************
[2025-10-19 00:59:30] 2025-10-18 22:58:57,734 | INFO     | 
[2025-10-19 00:59:30] 2025-10-18 22:58:57,734 | INFO     | architecture information:
[2025-10-19 00:59:30] 2025-10-18 22:58:57,734 | INFO     | executing command: cat /etc/os-release
[2025-10-19 00:59:30] 2025-10-18 22:58:57,749 | INFO     | cat /etc/os-release:
[2025-10-19 00:59:30] NAME="CentOS Linux"
[2025-10-19 00:59:30] VERSION="7 (Core)"
[2025-10-19 00:59:30] ID="centos"
[2025-10-19 00:59:30] ID_LIKE="rhel fedora"
[2025-10-19 00:59:30] VERSION_ID="7"
[2025-10-19 00:59:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-19 00:59:30] ANSI_COLOR="0;31"
[2025-10-19 00:59:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-19 00:59:30] HOME_URL="https://www.centos.org/"
[2025-10-19 00:59:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-19 00:59:30] 
[2025-10-19 00:59:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-19 00:59:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-19 00:59:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-19 00:59:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-19 00:59:30] 
[2025-10-19 00:59:30] 2025-10-18 22:58:57,750 | INFO     | ***************************************
[2025-10-19 00:59:30] 2025-10-18 22:58:58,253 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-19 00:59:30] 2025-10-18 22:58:58,272 | INFO     | sufficient remaining disk space (229459886080 B)
[2025-10-19 00:59:30] 2025-10-18 22:58:58,272 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-19 00:59:30] 2025-10-18 22:58:58,273 | INFO     | current server update state: UPDATING_FINAL
[2025-10-19 00:59:30] 2025-10-18 22:58:58,273 | INFO     | update_server=False
[2025-10-19 00:59:30] 2025-10-18 22:58:58,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-19 00:59:30] 2025-10-18 22:58:58,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-19 00:59:30] 2025-10-18 22:58:58,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-19 00:59:30] 2025-10-18 22:58:58,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-19 00:59:30] 2025-10-18 22:58:58,404 | INFO     | aborting loop
[2025-10-19 00:59:30] 2025-10-18 22:58:58,685 | INFO     | all data control threads have been joined
[2025-10-19 00:59:30] 2025-10-18 22:58:59,247 | INFO     | all job control threads have been joined
[2025-10-19 00:59:30] 2025-10-18 22:58:59,249 | INFO     | all payload control threads have been joined
[2025-10-19 00:59:30] 2025-10-18 22:58:59,276 | INFO     | [job] queue monitor thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:58:59,278 | INFO     | [job] retrieve thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:58:59,410 | INFO     | [job] job monitor thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:58:59,443 | INFO     | [payload] execute_payloads thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:58:59,567 | INFO     | [data] copytool_in thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:58:59,691 | INFO     | [data] control thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,253 | INFO     | [job] control thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,254 | INFO     | [payload] control thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,279 | INFO     | [data] copytool_out thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,281 | INFO     | [job] validate thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,292 | INFO     | [payload] validate_post thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,394 | INFO     | [job] create_data_payload thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-19 00:59:30] 2025-10-18 22:59:00,482 | INFO     | [payload] validate_pre thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:00,508 | INFO     | [payload] failed_post thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:04,402 | INFO     | [data] queue_monitor thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:08,955 | INFO     | job.realtimelogging is not enabled
[2025-10-19 00:59:30] 2025-10-18 22:59:09,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-19 00:59:30] 2025-10-18 22:59:24,842 | INFO     | [monitor] cgroup control has ended
[2025-10-19 00:59:30] 2025-10-18 22:59:24,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139638525286208)>', '<ExcThread(monitor, started 139637288851200)>']
[2025-10-19 00:59:30] 2025-10-18 22:59:27,911 | INFO     | PID=1250472 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-19 00:59:30] 2025-10-18 22:59:27,911 | INFO     | found 0 job(s) in 20 queues
[2025-10-19 00:59:30] 2025-10-18 22:59:27,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-19 00:59:30] 2025-10-18 22:59:27,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-19 00:59:30] 2025-10-18 22:59:27,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-19 00:59:30] 2025-10-18 22:59:27,911 | INFO     | [monitor] control thread has ended
[2025-10-19 00:59:30] 2025-10-18 22:59:29,997 | INFO     | all workflow threads have been joined
[2025-10-19 00:59:30] 2025-10-18 22:59:29,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-19 00:59:30] 2025-10-18 22:59:29,998 | INFO     | traces error code: 0
[2025-10-19 00:59:30] 2025-10-18 22:59:29,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-19 00:59:30] 2025-10-18 22:59:30,082 [wrapper] ==== pilot stdout END ====
[2025-10-19 00:59:30] 2025-10-18 22:59:30,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-19 00:59:30] 2025-10-18 22:59:30,090 [wrapper] pilotpid: 1250472
[2025-10-19 00:59:30] 2025-10-18 22:59:30,094 [wrapper] Pilot exit status: 0
[2025-10-19 00:59:30] 2025-10-18 22:59:30,106 [wrapper] pandaids: 6848017070
[2025-10-19 00:59:30] 2025-10-18 22:59:30,130 [wrapper] cleanup supervisor_pilot 1269450 1250473
[2025-10-19 00:59:30] 2025-10-18 22:59:30,133 [wrapper] Test setup, not cleaning
[2025-10-19 00:59:30] 2025-10-18 22:59:30,137 [wrapper] apfmon messages muted
[2025-10-19 00:59:30] 2025-10-18 22:59:30,141 [wrapper] ==== wrapper stdout END ====
[2025-10-19 00:59:30] 2025-10-18 22:59:30,146 [wrapper] ==== wrapper stderr END ====
[2025-10-19 00:59:30]  *** Error codes and diagnostics ***
[2025-10-19 00:59:30]     "exeErrorCode": 0,
[2025-10-19 00:59:30]     "exeErrorDiag": "",
[2025-10-19 00:59:30]     "pilotErrorCode": 0,
[2025-10-19 00:59:30]     "pilotErrorDiag": "",
[2025-10-19 00:59:30]  *** Listing of results directory ***
[2025-10-19 00:59:30] total 428828
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc    557409 Oct 18 01:20 pilot3.tar.gz
[2025-10-19 00:59:30] -rwx------ 1 boinc boinc     36292 Oct 18 01:57 runpilot2-wrapper.sh
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc      5112 Oct 18 01:57 queuedata.json
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc       100 Oct 18 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-19 00:59:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 23:39 run_atlas
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc       105 Oct 18 23:39 job.xml
[2025-10-19 00:59:30] -rw-r--r-- 2 boinc boinc 226572278 Oct 18 23:39 EVNT.46771634._001517.pool.root.1
[2025-10-19 00:59:30] -rw-r--r-- 2 boinc boinc    569672 Oct 18 23:39 input.tar.gz
[2025-10-19 00:59:30] -rw-r--r-- 2 boinc boinc     15120 Oct 18 23:39 start_atlas.sh
[2025-10-19 00:59:30] drwxrwx--x 2 boinc boinc      4096 Oct 18 23:39 shared
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc         0 Oct 18 23:39 boinc_setup_complete
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc      6377 Oct 18 23:39 init_data.xml
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc         0 Oct 18 23:39 boinc_lockfile
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc      2558 Oct 18 23:39 pandaJob.out
[2025-10-19 00:59:30] -rw------- 1 boinc boinc    976750 Oct 18 23:39 agis_schedconf.cvmfs.json
[2025-10-19 00:59:30] -rw------- 1 boinc boinc   1560740 Oct 18 23:39 agis_ddmendpoints.agis.ALL.json
[2025-10-19 00:59:30] drwx------ 5 boinc boinc      4096 Oct 18 23:39 pilot3
[2025-10-19 00:59:30] -rw------- 1 boinc boinc 206737108 Oct 19 00:58 HITS.46771637._034265.pool.root.1
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc       530 Oct 19 00:58 boinc_task_state.xml
[2025-10-19 00:59:30] -rw------- 1 boinc boinc      1035 Oct 19 00:58 memory_monitor_summary.json
[2025-10-19 00:59:30] -rw------- 1 boinc boinc        95 Oct 19 00:58 pilot_heartbeat.json
[2025-10-19 00:59:30] -rw------- 1 boinc boinc    255149 Oct 19 00:58 log.46771637._034265.job.log.tgz.1
[2025-10-19 00:59:30] -rw------- 1 boinc boinc      7767 Oct 19 00:58 heartbeat.json
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc      8192 Oct 19 00:59 boinc_mmap_file
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc        27 Oct 19 00:59 wrapper_checkpoint.txt
[2025-10-19 00:59:30] -rw------- 1 boinc boinc      4824 Oct 19 00:59 pilotlog.txt
[2025-10-19 00:59:30] -rw------- 1 boinc boinc    703201 Oct 19 00:59 log.46771637._034265.job.log.1
[2025-10-19 00:59:30] -rw------- 1 boinc boinc       357 Oct 19 00:59 output.list
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc       620 Oct 19 00:59 runtime_log
[2025-10-19 00:59:30] -rw------- 1 boinc boinc    972800 Oct 19 00:59 result.tar.gz
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc      8777 Oct 19 00:59 runtime_log.err
[2025-10-19 00:59:30] -rw------- 1 boinc boinc       658 Oct 19 00:59 qKfMDmHV9T8n9Rq4apOajLDm4fhM0noT9bVof3QYDma6aMDmFMfy9m.diag
[2025-10-19 00:59:30] -rw-r--r-- 1 boinc boinc     12341 Oct 19 00:59 stderr.txt
[2025-10-19 00:59:30] HITS file was successfully produced:
[2025-10-19 00:59:30] -rw------- 1 boinc boinc 206737108 Oct 19 00:58 shared/HITS.pool.root.1
[2025-10-19 00:59:30]  *** Contents of shared directory: ***
[2025-10-19 00:59:30] total 424692
[2025-10-19 00:59:30] -rw-r--r-- 2 boinc boinc 226572278 Oct 18 23:39 ATLAS.root_0
[2025-10-19 00:59:30] -rw-r--r-- 2 boinc boinc    569672 Oct 18 23:39 input.tar.gz
[2025-10-19 00:59:30] -rw-r--r-- 2 boinc boinc     15120 Oct 18 23:39 start_atlas.sh
[2025-10-19 00:59:30] -rw------- 1 boinc boinc 206737108 Oct 19 00:58 HITS.pool.root.1
[2025-10-19 00:59:30] -rw------- 1 boinc boinc    972800 Oct 19 00:59 result.tar.gz
00:59:32 (1246682): run_atlas exited; CPU time 17895.568833
00:59:32 (1246682): called boinc_finish(0)

</stderr_txt>
]]>

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