Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:20:38 (3632063): wrapper (7.7.26015): starting
21:20:38 (3632063): wrapper: running run_atlas (--nthreads 2)
[2025-10-18 21:20:38] Arguments: --nthreads 2
[2025-10-18 21:20:38] Threads: 2
[2025-10-18 21:20:38] Checking for CVMFS
[2025-10-18 21:20:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 21:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 21:20:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 21:20:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 21:20:38] 2.9.2.0 2746064 4029 61212 151862 3 56 28836763 36864000 0 130560 0 2299785 99.988 145990 2868 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 21:20:38] CVMFS is ok
[2025-10-18 21:20:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 21:20:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 21:20:38] Further information can be found at the LHC@home message board.
[2025-10-18 21:20:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 21:20:38] Checking for apptainer binary...
[2025-10-18 21:20:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 21:20:38] Running /usr/bin/apptainer --version
[2025-10-18 21:20:38] apptainer version 1.4.1-1.1
[2025-10-18 21:20:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 21:20:38] thA337
[2025-10-18 21:20:38] apptainer works
[2025-10-18 21:20:38] Set ATHENA_PROC_NUMBER=2
[2025-10-18 21:20:38] Set ATHENA_CORE_NUMBER=2
[2025-10-18 21:20:38] Starting ATLAS job with PandaID=6848021340
[2025-10-18 21:20:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 23:31:22]  *** The last 200 lines of the pilot log: ***
[2025-10-18 23:31:23] 2025-10-18 21:30:50,238 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 23:31:23] 2025-10-18 21:30:50,238 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 23:31:23] 2025-10-18 21:30:50,238 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 23:31:23] 2025-10-18 21:30:50,238 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 23:31:23] 2025-10-18 21:30:50,239 | INFO     | job 6848021340 has completed (purged errors)
[2025-10-18 23:31:23] 2025-10-18 21:30:50,239 | INFO     | overall cleanup function is called
[2025-10-18 23:31:23] 2025-10-18 21:30:50,738 | INFO     | PID=3635768 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 23:31:23] 2025-10-18 21:30:51,245 | INFO     | --- collectZombieJob: --- 10, [3642181]
[2025-10-18 23:31:23] 2025-10-18 21:30:51,245 | INFO     | zombie collector waiting for pid 3642181
[2025-10-18 23:31:23] 2025-10-18 21:30:51,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 23:31:23] 2025-10-18 21:30:51,246 | INFO     | collected zombie processes
[2025-10-18 23:31:23] 2025-10-18 21:30:51,246 | INFO     | will attempt to kill all subprocesses of pid=3642181
[2025-10-18 23:31:23] 2025-10-18 21:30:51,278 | INFO     | process IDs to be killed: [3642181] (in reverse order)
[2025-10-18 23:31:23] 2025-10-18 21:30:51,298 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 23:31:23] 2025-10-18 21:30:51,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 23:31:23] 2025-10-18 21:30:51,299 | INFO     | did not find any defunct processes belonging to 3642181
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | did not find any defunct processes belonging to 3642181
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | ready for new job
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | ***************************************
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | ***************************************
[2025-10-18 23:31:23] 2025-10-18 21:30:51,300 | INFO     | 
[2025-10-18 23:31:23] 2025-10-18 21:30:51,301 | INFO     | architecture information:
[2025-10-18 23:31:23] 2025-10-18 21:30:51,301 | INFO     | executing command: cat /etc/os-release
[2025-10-18 23:31:23] 2025-10-18 21:30:51,309 | INFO     | cat /etc/os-release:
[2025-10-18 23:31:23] NAME="CentOS Linux"
[2025-10-18 23:31:23] VERSION="7 (Core)"
[2025-10-18 23:31:23] ID="centos"
[2025-10-18 23:31:23] ID_LIKE="rhel fedora"
[2025-10-18 23:31:23] VERSION_ID="7"
[2025-10-18 23:31:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 23:31:23] ANSI_COLOR="0;31"
[2025-10-18 23:31:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 23:31:23] HOME_URL="https://www.centos.org/"
[2025-10-18 23:31:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 23:31:23] 
[2025-10-18 23:31:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 23:31:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 23:31:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 23:31:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 23:31:23] 
[2025-10-18 23:31:23] 2025-10-18 21:30:51,309 | INFO     | ***************************************
[2025-10-18 23:31:23] 2025-10-18 21:30:51,812 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 23:31:23] 2025-10-18 21:30:51,825 | INFO     | sufficient remaining disk space (482307211264 B)
[2025-10-18 23:31:23] 2025-10-18 21:30:51,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 23:31:23] 2025-10-18 21:30:51,825 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 23:31:23] 2025-10-18 21:30:51,825 | INFO     | update_server=False
[2025-10-18 23:31:23] 2025-10-18 21:30:51,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 23:31:23] 2025-10-18 21:30:51,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 23:31:23] 2025-10-18 21:30:52,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 23:31:23] 2025-10-18 21:30:52,257 | INFO     | all data control threads have been joined
[2025-10-18 23:31:23] 2025-10-18 21:30:52,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 23:31:23] 2025-10-18 21:30:52,368 | INFO     | aborting loop
[2025-10-18 23:31:23] 2025-10-18 21:30:52,689 | INFO     | all job control threads have been joined
[2025-10-18 23:31:23] 2025-10-18 21:30:52,831 | INFO     | [job] retrieve thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:52,831 | INFO     | [job] queue monitor thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:52,971 | INFO     | [payload] failed_post thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:53,080 | INFO     | all payload control threads have been joined
[2025-10-18 23:31:23] 2025-10-18 21:30:53,263 | INFO     | [data] control thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:53,374 | INFO     | [job] job monitor thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:53,492 | INFO     | [payload] validate_post thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:53,691 | INFO     | [job] control thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:53,828 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:53,855 | INFO     | [data] copytool_in thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:54,079 | INFO     | [data] copytool_out thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:54,086 | INFO     | [payload] control thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:54,091 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:54,092 | INFO     | [job] validate thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:54,175 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:30:54,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 23:31:23] 2025-10-18 21:30:58,328 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:31:02,167 | INFO     | job.realtimelogging is not enabled
[2025-10-18 23:31:23] 2025-10-18 21:31:02,772 | INFO     | [monitor] cgroup control has ended
[2025-10-18 23:31:23] 2025-10-18 21:31:03,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 23:31:23] 2025-10-18 21:31:03,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139873733941056)>', '<ExcThread(monitor, started 139873109399296)>']
[2025-10-18 23:31:23] 2025-10-18 21:31:08,343 | INFO     | all workflow threads have been joined
[2025-10-18 23:31:23] 2025-10-18 21:31:08,343 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 23:31:23] 2025-10-18 21:31:08,344 | INFO     | traces error code: 0
[2025-10-18 23:31:23] 2025-10-18 21:31:08,344 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 23:31:23] 2025-10-18 21:31:22,881 | INFO     | PID=3635768 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 23:31:23] 2025-10-18 21:31:22,881 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 23:31:23] 2025-10-18 21:31:22,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 23:31:23] 2025-10-18 21:31:22,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 23:31:23] 2025-10-18 21:31:22,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 23:31:23] 2025-10-18 21:31:22,881 | INFO     | [monitor] control thread has ended
[2025-10-18 23:31:23] 2025-10-18 21:31:22,918 [wrapper] ==== pilot stdout END ====
[2025-10-18 23:31:23] 2025-10-18 21:31:22,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 23:31:23] 2025-10-18 21:31:22,922 [wrapper] pilotpid: 3635768
[2025-10-18 23:31:23] 2025-10-18 21:31:22,924 [wrapper] Pilot exit status: 0
[2025-10-18 23:31:23] 2025-10-18 21:31:22,930 [wrapper] pandaids: 6848021340
[2025-10-18 23:31:23] 2025-10-18 21:31:22,942 [wrapper] cleanup supervisor_pilot 3656520 3635769
[2025-10-18 23:31:23] 2025-10-18 21:31:22,944 [wrapper] Test setup, not cleaning
[2025-10-18 23:31:23] 2025-10-18 21:31:22,946 [wrapper] apfmon messages muted
[2025-10-18 23:31:23] 2025-10-18 21:31:22,948 [wrapper] ==== wrapper stdout END ====
[2025-10-18 23:31:23] 2025-10-18 21:31:22,950 [wrapper] ==== wrapper stderr END ====
[2025-10-18 23:31:23]  *** Error codes and diagnostics ***
[2025-10-18 23:31:23]     "exeErrorCode": 0,
[2025-10-18 23:31:23]     "exeErrorDiag": "",
[2025-10-18 23:31:23]     "pilotErrorCode": 0,
[2025-10-18 23:31:23]     "pilotErrorDiag": "",
[2025-10-18 23:31:23]  *** Listing of results directory ***
[2025-10-18 23:31:23] total 426920
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc    557409 Oct 18 06:03 pilot3.tar.gz
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc      5112 Oct 18 06:11 queuedata.json
[2025-10-18 23:31:23] -rwx------ 1 boinc boinc     36292 Oct 18 06:12 runpilot2-wrapper.sh
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc       100 Oct 18 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 23:31:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 21:20 run_atlas
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc       105 Oct 18 21:20 job.xml
[2025-10-18 23:31:23] -rw-r--r-- 2 boinc boinc 229606975 Oct 18 21:20 EVNT.46771634._001626.pool.root.1
[2025-10-18 23:31:23] -rw-r--r-- 2 boinc boinc    569675 Oct 18 21:20 input.tar.gz
[2025-10-18 23:31:23] -rw-r--r-- 2 boinc boinc     15120 Oct 18 21:20 start_atlas.sh
[2025-10-18 23:31:23] drwxrwx--x 2 boinc boinc      4096 Oct 18 21:20 shared
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc         0 Oct 18 21:20 boinc_setup_complete
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc      6205 Oct 18 21:20 init_data.xml
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc         0 Oct 18 21:20 boinc_lockfile
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc      2557 Oct 18 21:20 pandaJob.out
[2025-10-18 23:31:23] -rw------- 1 boinc boinc    976734 Oct 18 21:20 agis_schedconf.cvmfs.json
[2025-10-18 23:31:23] -rw------- 1 boinc boinc   1560740 Oct 18 21:20 agis_ddmendpoints.agis.ALL.json
[2025-10-18 23:31:23] drwx------ 5 boinc boinc      4096 Oct 18 21:20 pilot3
[2025-10-18 23:31:23] -rw------- 1 boinc boinc 200877151 Oct 18 23:30 HITS.46771637._037221.pool.root.1
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc       529 Oct 18 23:30 boinc_task_state.xml
[2025-10-18 23:31:23] -rw------- 1 boinc boinc        95 Oct 18 23:30 pilot_heartbeat.json
[2025-10-18 23:31:23] -rw------- 1 boinc boinc      1015 Oct 18 23:30 memory_monitor_summary.json
[2025-10-18 23:31:23] -rw------- 1 boinc boinc    275737 Oct 18 23:30 log.46771637._037221.job.log.tgz.1
[2025-10-18 23:31:23] -rw------- 1 boinc boinc      7757 Oct 18 23:30 heartbeat.json
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc      8192 Oct 18 23:31 boinc_mmap_file
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc        27 Oct 18 23:31 wrapper_checkpoint.txt
[2025-10-18 23:31:23] -rw------- 1 boinc boinc       747 Oct 18 23:31 pilotlog.txt
[2025-10-18 23:31:23] -rw------- 1 boinc boinc   1121985 Oct 18 23:31 log.46771637._037221.job.log.1
[2025-10-18 23:31:23] -rw------- 1 boinc boinc       357 Oct 18 23:31 output.list
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc       620 Oct 18 23:31 runtime_log
[2025-10-18 23:31:23] -rw------- 1 boinc boinc   1413120 Oct 18 23:31 result.tar.gz
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc      8777 Oct 18 23:31 runtime_log.err
[2025-10-18 23:31:23] -rw------- 1 boinc boinc       659 Oct 18 23:31 HyoKDmCUDU8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr5vNDmRiEfen.diag
[2025-10-18 23:31:23] -rw-r--r-- 1 boinc boinc     11530 Oct 18 23:31 stderr.txt
[2025-10-18 23:31:23] HITS file was successfully produced:
[2025-10-18 23:31:23] -rw------- 1 boinc boinc 200877151 Oct 18 23:30 shared/HITS.pool.root.1
[2025-10-18 23:31:23]  *** Contents of shared directory: ***
[2025-10-18 23:31:23] total 422364
[2025-10-18 23:31:23] -rw-r--r-- 2 boinc boinc 229606975 Oct 18 21:20 ATLAS.root_0
[2025-10-18 23:31:23] -rw-r--r-- 2 boinc boinc    569675 Oct 18 21:20 input.tar.gz
[2025-10-18 23:31:23] -rw-r--r-- 2 boinc boinc     15120 Oct 18 21:20 start_atlas.sh
[2025-10-18 23:31:23] -rw------- 1 boinc boinc 200877151 Oct 18 23:30 HITS.pool.root.1
[2025-10-18 23:31:23] -rw------- 1 boinc boinc   1413120 Oct 18 23:31 result.tar.gz
23:31:24 (3632063): run_atlas exited; CPU time 15112.731773
23:31:24 (3632063): called boinc_finish(0)

</stderr_txt>
]]>

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