Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:18:24 (1240616): wrapper (7.7.26015): starting
21:18:24 (1240616): wrapper: running run_atlas (--nthreads 3)
[2025-10-18 21:18:24] Arguments: --nthreads 3
[2025-10-18 21:18:24] Threads: 3
[2025-10-18 21:18:24] Checking for CVMFS
[2025-10-18 21:18:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-18 21:18:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-18 21:18:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-18 21:18:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-18 21:18:24] 2.9.2.0 114696 3881 83316 151862 0 56 31128651 36864001 0 130560 0 2921934 99.990 141005 2930 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-18 21:18:24] CVMFS is ok
[2025-10-18 21:18:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-18 21:18:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-18 21:18:24] Further information can be found at the LHC@home message board.
[2025-10-18 21:18:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-18 21:18:24] Checking for apptainer binary...
[2025-10-18 21:18:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-18 21:18:24] Running /usr/bin/apptainer --version
[2025-10-18 21:18:24] apptainer version 1.4.1-1.1
[2025-10-18 21:18:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-18 21:18:24] magicA246a
[2025-10-18 21:18:24] apptainer works
[2025-10-18 21:18:24] Set ATHENA_PROC_NUMBER=3
[2025-10-18 21:18:24] Set ATHENA_CORE_NUMBER=3
[2025-10-18 21:18:24] Starting ATLAS job with PandaID=6848019822
[2025-10-18 21:18:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-18 22:45:43]  *** The last 200 lines of the pilot log: ***
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | job 6848019822 has completed (purged errors)
[2025-10-18 22:45:43] 2025-10-18 20:45:11,470 | INFO     | overall cleanup function is called
[2025-10-18 22:45:43] 2025-10-18 20:45:12,477 | INFO     | --- collectZombieJob: --- 10, [1250780]
[2025-10-18 22:45:43] 2025-10-18 20:45:12,477 | INFO     | zombie collector waiting for pid 1250780
[2025-10-18 22:45:43] 2025-10-18 20:45:12,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-18 22:45:43] 2025-10-18 20:45:12,477 | INFO     | collected zombie processes
[2025-10-18 22:45:43] 2025-10-18 20:45:12,477 | INFO     | will attempt to kill all subprocesses of pid=1250780
[2025-10-18 22:45:43] 2025-10-18 20:45:12,522 | INFO     | process IDs to be killed: [1250780] (in reverse order)
[2025-10-18 22:45:43] 2025-10-18 20:45:12,546 | WARNING  | found no corresponding commands to process id(s)
[2025-10-18 22:45:43] 2025-10-18 20:45:12,546 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-18 22:45:43] 2025-10-18 20:45:12,547 | INFO     | did not find any defunct processes belonging to 1250780
[2025-10-18 22:45:43] 2025-10-18 20:45:12,548 | INFO     | did not find any defunct processes belonging to 1250780
[2025-10-18 22:45:43] 2025-10-18 20:45:12,548 | INFO     | ready for new job
[2025-10-18 22:45:43] 2025-10-18 20:45:12,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-18 22:45:43] 2025-10-18 20:45:12,549 | INFO     | ***************************************
[2025-10-18 22:45:43] 2025-10-18 20:45:12,549 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-18 22:45:43] 2025-10-18 20:45:12,549 | INFO     | ***************************************
[2025-10-18 22:45:43] 2025-10-18 20:45:12,549 | INFO     | 
[2025-10-18 22:45:43] 2025-10-18 20:45:12,549 | INFO     | architecture information:
[2025-10-18 22:45:43] 2025-10-18 20:45:12,550 | INFO     | executing command: cat /etc/os-release
[2025-10-18 22:45:43] 2025-10-18 20:45:12,558 | INFO     | cat /etc/os-release:
[2025-10-18 22:45:43] NAME="CentOS Linux"
[2025-10-18 22:45:43] VERSION="7 (Core)"
[2025-10-18 22:45:43] ID="centos"
[2025-10-18 22:45:43] ID_LIKE="rhel fedora"
[2025-10-18 22:45:43] VERSION_ID="7"
[2025-10-18 22:45:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-18 22:45:43] ANSI_COLOR="0;31"
[2025-10-18 22:45:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-18 22:45:43] HOME_URL="https://www.centos.org/"
[2025-10-18 22:45:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-18 22:45:43] 
[2025-10-18 22:45:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-18 22:45:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-18 22:45:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-18 22:45:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-18 22:45:43] 
[2025-10-18 22:45:43] 2025-10-18 20:45:12,558 | INFO     | ***************************************
[2025-10-18 22:45:43] 2025-10-18 20:45:13,061 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | INFO     | sufficient remaining disk space (273229545472 B)
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | INFO     | current server update state: UPDATING_FINAL
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | INFO     | update_server=False
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-18 22:45:43] 2025-10-18 20:45:13,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-18 22:45:43] 2025-10-18 20:45:13,153 | INFO     | all payload control threads have been joined
[2025-10-18 22:45:43] 2025-10-18 20:45:13,359 | INFO     | all data control threads have been joined
[2025-10-18 22:45:43] 2025-10-18 20:45:13,449 | INFO     | all job control threads have been joined
[2025-10-18 22:45:43] 2025-10-18 20:45:13,673 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-18 22:45:43] 2025-10-18 20:45:13,673 | INFO     | aborting loop
[2025-10-18 22:45:43] 2025-10-18 20:45:14,080 | INFO     | [job] retrieve thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,080 | INFO     | [job] queue monitor thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,157 | INFO     | [payload] control thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,245 | INFO     | [payload] failed_post thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,364 | INFO     | [data] control thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,455 | INFO     | [job] control thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,583 | INFO     | [job] validate thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,679 | INFO     | [job] job monitor thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,711 | INFO     | [payload] validate_pre thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,712 | INFO     | [job] create_data_payload thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,769 | INFO     | [payload] validate_post thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:14,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-18 22:45:43] 2025-10-18 20:45:15,080 | INFO     | [data] copytool_out thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:15,424 | INFO     | [payload] execute_payloads thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:15,574 | INFO     | [data] copytool_in thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:18,996 | INFO     | [data] queue_monitor thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:24,076 | INFO     | job.realtimelogging is not enabled
[2025-10-18 22:45:43] 2025-10-18 20:45:25,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-18 22:45:43] 2025-10-18 20:45:35,615 | INFO     | [monitor] cgroup control has ended
[2025-10-18 22:45:43] 2025-10-18 20:45:37,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078225504064)>', '<ExcThread(monitor, started 140077606893312)>']
[2025-10-18 22:45:43] 2025-10-18 20:45:42,119 | INFO     | all workflow threads have been joined
[2025-10-18 22:45:43] 2025-10-18 20:45:42,119 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-18 22:45:43] 2025-10-18 20:45:42,119 | INFO     | traces error code: 0
[2025-10-18 22:45:43] 2025-10-18 20:45:42,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-18 22:45:43] 2025-10-18 20:45:43,163 | INFO     | PID=1244339 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-18 22:45:43] 2025-10-18 20:45:43,163 | INFO     | found 0 job(s) in 20 queues
[2025-10-18 22:45:43] 2025-10-18 20:45:43,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-18 22:45:43] 2025-10-18 20:45:43,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-18 22:45:43] 2025-10-18 20:45:43,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-18 22:45:43] 2025-10-18 20:45:43,163 | INFO     | [monitor] control thread has ended
[2025-10-18 22:45:43] 2025-10-18 20:45:43,212 [wrapper] ==== pilot stdout END ====
[2025-10-18 22:45:43] 2025-10-18 20:45:43,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-18 22:45:43] 2025-10-18 20:45:43,216 [wrapper] pilotpid: 1244339
[2025-10-18 22:45:43] 2025-10-18 20:45:43,218 [wrapper] Pilot exit status: 0
[2025-10-18 22:45:43] 2025-10-18 20:45:43,226 [wrapper] pandaids: 6848019822
[2025-10-18 22:45:43] 2025-10-18 20:45:43,241 [wrapper] cleanup supervisor_pilot 1264640 1244340
[2025-10-18 22:45:43] 2025-10-18 20:45:43,244 [wrapper] Test setup, not cleaning
[2025-10-18 22:45:43] 2025-10-18 20:45:43,246 [wrapper] apfmon messages muted
[2025-10-18 22:45:43] 2025-10-18 20:45:43,248 [wrapper] ==== wrapper stdout END ====
[2025-10-18 22:45:43] 2025-10-18 20:45:43,250 [wrapper] ==== wrapper stderr END ====
[2025-10-18 22:45:43]  *** Error codes and diagnostics ***
[2025-10-18 22:45:43]     "exeErrorCode": 0,
[2025-10-18 22:45:43]     "exeErrorDiag": "",
[2025-10-18 22:45:43]     "pilotErrorCode": 0,
[2025-10-18 22:45:43]     "pilotErrorDiag": "",
[2025-10-18 22:45:43]  *** Listing of results directory ***
[2025-10-18 22:45:43] total 428848
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc    557409 Oct 18 05:33 pilot3.tar.gz
[2025-10-18 22:45:43] -rwx------ 1 boinc boinc     36292 Oct 18 05:47 runpilot2-wrapper.sh
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc      5112 Oct 18 05:47 queuedata.json
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc       100 Oct 18 21:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-18 22:45:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 18 21:18 run_atlas
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc       105 Oct 18 21:18 job.xml
[2025-10-18 22:45:43] -rw-r--r-- 2 boinc boinc 226782895 Oct 18 21:18 EVNT.46771634._000456.pool.root.1
[2025-10-18 22:45:43] -rw-r--r-- 2 boinc boinc    569675 Oct 18 21:18 input.tar.gz
[2025-10-18 22:45:43] -rw-r--r-- 2 boinc boinc     15120 Oct 18 21:18 start_atlas.sh
[2025-10-18 22:45:43] drwxrwx--x 2 boinc boinc      4096 Oct 18 21:18 shared
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc         0 Oct 18 21:18 boinc_setup_complete
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc      6447 Oct 18 21:18 init_data.xml
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc         0 Oct 18 21:18 boinc_lockfile
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc      2557 Oct 18 21:18 pandaJob.out
[2025-10-18 22:45:43] -rw------- 1 boinc boinc    976734 Oct 18 21:18 agis_schedconf.cvmfs.json
[2025-10-18 22:45:43] -rw------- 1 boinc boinc   1560740 Oct 18 21:18 agis_ddmendpoints.agis.ALL.json
[2025-10-18 22:45:43] drwx------ 5 boinc boinc      4096 Oct 18 21:18 pilot3
[2025-10-18 22:45:43] -rw------- 1 boinc boinc 206410469 Oct 18 22:44 HITS.46771637._036481.pool.root.1
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc       529 Oct 18 22:44 boinc_task_state.xml
[2025-10-18 22:45:43] -rw------- 1 boinc boinc        95 Oct 18 22:44 pilot_heartbeat.json
[2025-10-18 22:45:43] -rw------- 1 boinc boinc      1015 Oct 18 22:45 memory_monitor_summary.json
[2025-10-18 22:45:43] -rw------- 1 boinc boinc    267200 Oct 18 22:45 log.46771637._036481.job.log.tgz.1
[2025-10-18 22:45:43] -rw------- 1 boinc boinc      7763 Oct 18 22:45 heartbeat.json
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc      8192 Oct 18 22:45 boinc_mmap_file
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc        27 Oct 18 22:45 wrapper_checkpoint.txt
[2025-10-18 22:45:43] -rw------- 1 boinc boinc       747 Oct 18 22:45 pilotlog.txt
[2025-10-18 22:45:43] -rw------- 1 boinc boinc    760333 Oct 18 22:45 log.46771637._036481.job.log.1
[2025-10-18 22:45:43] -rw------- 1 boinc boinc       357 Oct 18 22:45 output.list
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc       620 Oct 18 22:45 runtime_log
[2025-10-18 22:45:43] -rw------- 1 boinc boinc   1044480 Oct 18 22:45 result.tar.gz
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc      8797 Oct 18 22:45 runtime_log.err
[2025-10-18 22:45:43] -rw------- 1 boinc boinc       662 Oct 18 22:45 2ubNDmm5CU8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2PbMDmcB3cqm.diag
[2025-10-18 22:45:43] -rw-r--r-- 1 boinc boinc     12645 Oct 18 22:45 stderr.txt
[2025-10-18 22:45:43] HITS file was successfully produced:
[2025-10-18 22:45:43] -rw------- 1 boinc boinc 206410469 Oct 18 22:44 shared/HITS.pool.root.1
[2025-10-18 22:45:43]  *** Contents of shared directory: ***
[2025-10-18 22:45:43] total 424648
[2025-10-18 22:45:43] -rw-r--r-- 2 boinc boinc 226782895 Oct 18 21:18 ATLAS.root_0
[2025-10-18 22:45:43] -rw-r--r-- 2 boinc boinc    569675 Oct 18 21:18 input.tar.gz
[2025-10-18 22:45:43] -rw-r--r-- 2 boinc boinc     15120 Oct 18 21:18 start_atlas.sh
[2025-10-18 22:45:43] -rw------- 1 boinc boinc 206410469 Oct 18 22:44 HITS.pool.root.1
[2025-10-18 22:45:43] -rw------- 1 boinc boinc   1044480 Oct 18 22:45 result.tar.gz
22:45:44 (1240616): run_atlas exited; CPU time 14977.942073
22:45:44 (1240616): called boinc_finish(0)

</stderr_txt>
]]>

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